Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00463

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00462 and MPMX20_00463 are separated by 194 nucleotidesMPMX20_00463 and MPMX20_00464 overlap by 4 nucleotides MPMX20_00462: MPMX20_00462 - Proline/betaine transporter, at 477,764 to 479,038 _00462 MPMX20_00463: MPMX20_00463 - Putative acyl-CoA dehydrogenase AidB, at 479,233 to 480,855 _00463 MPMX20_00464: MPMX20_00464 - hypothetical protein, at 480,852 to 482,783 _00464 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 478.240 kb on - strand, within MPMX20_00462at 478.264 kb on + strand, within MPMX20_00462at 478.292 kb on + strand, within MPMX20_00462at 478.292 kb on + strand, within MPMX20_00462at 478.300 kb on - strand, within MPMX20_00462at 478.300 kb on - strand, within MPMX20_00462at 478.301 kb on - strand, within MPMX20_00462at 478.301 kb on - strand, within MPMX20_00462at 478.316 kb on - strand, within MPMX20_00462at 478.332 kb on - strand, within MPMX20_00462at 478.337 kb on - strand, within MPMX20_00462at 478.399 kb on + strand, within MPMX20_00462at 478.425 kb on - strand, within MPMX20_00462at 478.425 kb on - strand, within MPMX20_00462at 478.529 kb on - strand, within MPMX20_00462at 478.657 kb on - strand, within MPMX20_00462at 478.732 kb on - strand, within MPMX20_00462at 478.732 kb on - strand, within MPMX20_00462at 478.757 kb on + strand, within MPMX20_00462at 478.885 kb on + strand, within MPMX20_00462at 478.885 kb on + strand, within MPMX20_00462at 478.903 kb on - strand, within MPMX20_00462at 478.919 kb on - strandat 478.988 kb on + strandat 479.050 kb on + strandat 479.099 kb on + strandat 479.167 kb on + strandat 479.177 kb on - strandat 479.182 kb on + strandat 479.252 kb on - strandat 479.254 kb on - strandat 479.377 kb on - strandat 479.461 kb on - strand, within MPMX20_00463at 479.509 kb on - strand, within MPMX20_00463at 479.536 kb on + strand, within MPMX20_00463at 479.546 kb on + strand, within MPMX20_00463at 479.547 kb on + strand, within MPMX20_00463at 479.585 kb on - strand, within MPMX20_00463at 479.604 kb on + strand, within MPMX20_00463at 479.612 kb on - strand, within MPMX20_00463at 479.679 kb on + strand, within MPMX20_00463at 479.683 kb on + strand, within MPMX20_00463at 479.801 kb on + strand, within MPMX20_00463at 479.801 kb on + strand, within MPMX20_00463at 479.801 kb on + strand, within MPMX20_00463at 479.814 kb on - strand, within MPMX20_00463at 479.817 kb on - strand, within MPMX20_00463at 479.852 kb on + strand, within MPMX20_00463at 479.852 kb on + strand, within MPMX20_00463at 479.916 kb on + strand, within MPMX20_00463at 479.922 kb on + strand, within MPMX20_00463at 479.966 kb on - strand, within MPMX20_00463at 479.976 kb on + strand, within MPMX20_00463at 479.976 kb on + strand, within MPMX20_00463at 479.997 kb on - strand, within MPMX20_00463at 480.085 kb on + strand, within MPMX20_00463at 480.119 kb on + strand, within MPMX20_00463at 480.157 kb on - strand, within MPMX20_00463at 480.183 kb on + strand, within MPMX20_00463at 480.202 kb on + strand, within MPMX20_00463at 480.245 kb on + strand, within MPMX20_00463at 480.250 kb on + strand, within MPMX20_00463at 480.250 kb on + strand, within MPMX20_00463at 480.250 kb on + strand, within MPMX20_00463at 480.250 kb on + strand, within MPMX20_00463at 480.258 kb on - strand, within MPMX20_00463at 480.294 kb on + strand, within MPMX20_00463at 480.300 kb on - strand, within MPMX20_00463at 480.326 kb on - strand, within MPMX20_00463at 480.331 kb on - strand, within MPMX20_00463at 480.442 kb on + strand, within MPMX20_00463at 480.446 kb on + strand, within MPMX20_00463at 480.454 kb on - strand, within MPMX20_00463at 480.464 kb on - strand, within MPMX20_00463at 480.487 kb on + strand, within MPMX20_00463at 480.508 kb on + strand, within MPMX20_00463at 480.516 kb on - strand, within MPMX20_00463at 480.612 kb on - strand, within MPMX20_00463at 480.612 kb on - strand, within MPMX20_00463at 480.739 kb on + strandat 480.751 kb on + strandat 480.764 kb on - strandat 480.775 kb on + strandat 480.801 kb on - strandat 480.880 kb on - strandat 480.885 kb on + strandat 480.890 kb on + strandat 480.890 kb on + strandat 480.919 kb on - strandat 480.957 kb on - strandat 480.957 kb on - strandat 480.993 kb on + strandat 480.996 kb on - strandat 480.999 kb on + strandat 481.001 kb on - strandat 481.030 kb on + strandat 481.120 kb on - strand, within MPMX20_00464at 481.165 kb on - strand, within MPMX20_00464at 481.229 kb on - strand, within MPMX20_00464at 481.255 kb on + strand, within MPMX20_00464at 481.255 kb on + strand, within MPMX20_00464at 481.255 kb on + strand, within MPMX20_00464at 481.255 kb on + strand, within MPMX20_00464at 481.263 kb on - strand, within MPMX20_00464at 481.267 kb on + strand, within MPMX20_00464at 481.343 kb on - strand, within MPMX20_00464at 481.391 kb on - strand, within MPMX20_00464at 481.400 kb on - strand, within MPMX20_00464at 481.481 kb on + strand, within MPMX20_00464at 481.510 kb on + strand, within MPMX20_00464at 481.510 kb on - strand, within MPMX20_00464at 481.510 kb on - strand, within MPMX20_00464at 481.510 kb on - strand, within MPMX20_00464at 481.510 kb on - strand, within MPMX20_00464at 481.510 kb on - strand, within MPMX20_00464at 481.510 kb on - strand, within MPMX20_00464at 481.674 kb on - strand, within MPMX20_00464at 481.852 kb on + strand, within MPMX20_00464at 481.852 kb on + strand, within MPMX20_00464

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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478,240 - MPMX20_00462 0.37 -0.3
478,264 + MPMX20_00462 0.39 +3.4
478,292 + MPMX20_00462 0.41 -0.9
478,292 + MPMX20_00462 0.41 +0.4
478,300 - MPMX20_00462 0.42 +0.3
478,300 - MPMX20_00462 0.42 +1.5
478,301 - MPMX20_00462 0.42 -0.0
478,301 - MPMX20_00462 0.42 +0.2
478,316 - MPMX20_00462 0.43 +0.7
478,332 - MPMX20_00462 0.45 -3.3
478,337 - MPMX20_00462 0.45 +0.8
478,399 + MPMX20_00462 0.50 +1.3
478,425 - MPMX20_00462 0.52 +2.0
478,425 - MPMX20_00462 0.52 -0.2
478,529 - MPMX20_00462 0.60 +1.7
478,657 - MPMX20_00462 0.70 +1.5
478,732 - MPMX20_00462 0.76 -1.2
478,732 - MPMX20_00462 0.76 -0.5
478,757 + MPMX20_00462 0.78 -2.4
478,885 + MPMX20_00462 0.88 +1.6
478,885 + MPMX20_00462 0.88 -0.7
478,903 - MPMX20_00462 0.89 -3.2
478,919 - +1.4
478,988 + -0.1
479,050 + +0.7
479,099 + -0.6
479,167 + +0.8
479,177 - -1.0
479,182 + +0.1
479,252 - +0.9
479,254 - -1.3
479,377 - +0.1
479,461 - MPMX20_00463 0.14 +0.3
479,509 - MPMX20_00463 0.17 -0.6
479,536 + MPMX20_00463 0.19 +0.9
479,546 + MPMX20_00463 0.19 +0.2
479,547 + MPMX20_00463 0.19 -0.4
479,585 - MPMX20_00463 0.22 +0.6
479,604 + MPMX20_00463 0.23 -0.2
479,612 - MPMX20_00463 0.23 +1.2
479,679 + MPMX20_00463 0.27 -1.7
479,683 + MPMX20_00463 0.28 -1.1
479,801 + MPMX20_00463 0.35 -3.5
479,801 + MPMX20_00463 0.35 -0.3
479,801 + MPMX20_00463 0.35 +0.4
479,814 - MPMX20_00463 0.36 -0.7
479,817 - MPMX20_00463 0.36 +0.9
479,852 + MPMX20_00463 0.38 -0.6
479,852 + MPMX20_00463 0.38 +1.4
479,916 + MPMX20_00463 0.42 -2.6
479,922 + MPMX20_00463 0.42 -0.9
479,966 - MPMX20_00463 0.45 +0.6
479,976 + MPMX20_00463 0.46 +1.3
479,976 + MPMX20_00463 0.46 +1.5
479,997 - MPMX20_00463 0.47 +1.0
480,085 + MPMX20_00463 0.52 -0.0
480,119 + MPMX20_00463 0.55 +0.4
480,157 - MPMX20_00463 0.57 +2.6
480,183 + MPMX20_00463 0.59 +0.7
480,202 + MPMX20_00463 0.60 -0.7
480,245 + MPMX20_00463 0.62 -2.9
480,250 + MPMX20_00463 0.63 +3.1
480,250 + MPMX20_00463 0.63 +1.7
480,250 + MPMX20_00463 0.63 +10.5
480,250 + MPMX20_00463 0.63 +1.0
480,258 - MPMX20_00463 0.63 -0.8
480,294 + MPMX20_00463 0.65 +0.2
480,300 - MPMX20_00463 0.66 -0.4
480,326 - MPMX20_00463 0.67 +1.0
480,331 - MPMX20_00463 0.68 -0.1
480,442 + MPMX20_00463 0.74 +0.1
480,446 + MPMX20_00463 0.75 -0.3
480,454 - MPMX20_00463 0.75 -0.5
480,464 - MPMX20_00463 0.76 -0.5
480,487 + MPMX20_00463 0.77 +0.2
480,508 + MPMX20_00463 0.79 +0.6
480,516 - MPMX20_00463 0.79 +0.2
480,612 - MPMX20_00463 0.85 +1.6
480,612 - MPMX20_00463 0.85 -1.3
480,739 + -2.4
480,751 + +0.7
480,764 - -1.5
480,775 + -0.9
480,801 - -1.7
480,880 - +1.5
480,885 + +0.1
480,890 + +3.0
480,890 + +0.7
480,919 - +0.4
480,957 - -2.0
480,957 - +0.4
480,993 + -1.3
480,996 - -0.4
480,999 + +0.2
481,001 - -2.7
481,030 + -1.8
481,120 - MPMX20_00464 0.14 +3.4
481,165 - MPMX20_00464 0.16 -0.5
481,229 - MPMX20_00464 0.20 -0.6
481,255 + MPMX20_00464 0.21 -0.7
481,255 + MPMX20_00464 0.21 -1.8
481,255 + MPMX20_00464 0.21 +3.6
481,255 + MPMX20_00464 0.21 -0.5
481,263 - MPMX20_00464 0.21 +3.0
481,267 + MPMX20_00464 0.21 +0.4
481,343 - MPMX20_00464 0.25 +1.2
481,391 - MPMX20_00464 0.28 +0.5
481,400 - MPMX20_00464 0.28 -0.5
481,481 + MPMX20_00464 0.33 -0.6
481,510 + MPMX20_00464 0.34 -0.3
481,510 - MPMX20_00464 0.34 -1.3
481,510 - MPMX20_00464 0.34 +0.5
481,510 - MPMX20_00464 0.34 -2.4
481,510 - MPMX20_00464 0.34 -2.4
481,510 - MPMX20_00464 0.34 +1.4
481,510 - MPMX20_00464 0.34 -2.6
481,674 - MPMX20_00464 0.43 -1.0
481,852 + MPMX20_00464 0.52 -1.6
481,852 + MPMX20_00464 0.52 +0.8

Or see this region's nucleotide sequence