Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00181

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00179 and MPMX20_00180 are separated by 3 nucleotidesMPMX20_00180 and MPMX20_00181 are separated by 103 nucleotidesMPMX20_00181 and MPMX20_00182 are separated by 124 nucleotidesMPMX20_00182 and MPMX20_00183 are separated by 164 nucleotides MPMX20_00179: MPMX20_00179 - 2-dehydro-3-deoxygluconokinase, at 186,294 to 187,232 _00179 MPMX20_00180: MPMX20_00180 - hypothetical protein, at 187,236 to 187,985 _00180 MPMX20_00181: MPMX20_00181 - HTH-type transcriptional regulator KdgR, at 188,089 to 189,105 _00181 MPMX20_00182: MPMX20_00182 - putative lipoprotein YiaD, at 189,230 to 189,892 _00182 MPMX20_00183: MPMX20_00183 - Biotin sulfoxide reductase, at 190,057 to 192,384 _00183 Position (kb) 188 189 190Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 187.115 kb on + strand, within MPMX20_00179at 187.118 kb on - strand, within MPMX20_00179at 187.118 kb on - strand, within MPMX20_00179at 187.123 kb on - strand, within MPMX20_00179at 187.127 kb on - strand, within MPMX20_00179at 187.143 kb on + strandat 187.153 kb on + strandat 187.222 kb on + strandat 187.234 kb on + strandat 187.242 kb on - strandat 187.346 kb on + strand, within MPMX20_00180at 187.354 kb on - strand, within MPMX20_00180at 187.354 kb on - strand, within MPMX20_00180at 187.354 kb on - strand, within MPMX20_00180at 187.354 kb on - strand, within MPMX20_00180at 187.489 kb on - strand, within MPMX20_00180at 187.599 kb on + strand, within MPMX20_00180at 187.599 kb on + strand, within MPMX20_00180at 187.628 kb on + strand, within MPMX20_00180at 187.710 kb on - strand, within MPMX20_00180at 187.724 kb on - strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.730 kb on + strand, within MPMX20_00180at 187.735 kb on + strand, within MPMX20_00180at 187.735 kb on + strand, within MPMX20_00180at 187.737 kb on + strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.738 kb on - strand, within MPMX20_00180at 187.743 kb on - strand, within MPMX20_00180at 187.753 kb on + strand, within MPMX20_00180at 187.753 kb on + strand, within MPMX20_00180at 187.753 kb on + strand, within MPMX20_00180at 187.753 kb on + strand, within MPMX20_00180at 187.761 kb on - strand, within MPMX20_00180at 187.761 kb on - strand, within MPMX20_00180at 187.761 kb on - strand, within MPMX20_00180at 187.810 kb on - strand, within MPMX20_00180at 187.848 kb on + strand, within MPMX20_00180at 187.856 kb on - strand, within MPMX20_00180at 187.938 kb on - strandat 187.940 kb on + strandat 188.158 kb on + strandat 188.260 kb on - strand, within MPMX20_00181at 188.278 kb on - strand, within MPMX20_00181at 188.299 kb on + strand, within MPMX20_00181at 188.299 kb on + strand, within MPMX20_00181at 188.299 kb on + strand, within MPMX20_00181at 188.299 kb on + strand, within MPMX20_00181at 188.299 kb on + strand, within MPMX20_00181at 188.307 kb on - strand, within MPMX20_00181at 188.366 kb on + strand, within MPMX20_00181at 188.390 kb on + strand, within MPMX20_00181at 188.406 kb on + strand, within MPMX20_00181at 188.414 kb on - strand, within MPMX20_00181at 188.434 kb on - strand, within MPMX20_00181at 188.476 kb on + strand, within MPMX20_00181at 188.483 kb on - strand, within MPMX20_00181at 188.535 kb on - strand, within MPMX20_00181at 188.535 kb on - strand, within MPMX20_00181at 188.692 kb on + strand, within MPMX20_00181at 188.701 kb on + strand, within MPMX20_00181at 188.709 kb on - strand, within MPMX20_00181at 188.709 kb on - strand, within MPMX20_00181at 188.711 kb on - strand, within MPMX20_00181at 188.760 kb on + strand, within MPMX20_00181at 188.765 kb on + strand, within MPMX20_00181at 188.798 kb on + strand, within MPMX20_00181at 188.851 kb on + strand, within MPMX20_00181at 188.867 kb on + strand, within MPMX20_00181at 188.875 kb on - strand, within MPMX20_00181at 188.918 kb on - strand, within MPMX20_00181at 188.930 kb on - strand, within MPMX20_00181at 188.943 kb on + strand, within MPMX20_00181at 188.966 kb on + strand, within MPMX20_00181at 188.966 kb on + strand, within MPMX20_00181at 189.090 kb on + strandat 189.090 kb on + strandat 189.130 kb on + strandat 189.173 kb on - strandat 189.208 kb on + strandat 189.208 kb on + strandat 189.221 kb on + strandat 189.266 kb on + strandat 189.266 kb on + strandat 189.266 kb on + strandat 189.274 kb on - strandat 189.278 kb on + strandat 189.402 kb on - strand, within MPMX20_00182at 189.410 kb on + strand, within MPMX20_00182at 189.470 kb on - strand, within MPMX20_00182at 189.470 kb on - strand, within MPMX20_00182at 189.505 kb on - strand, within MPMX20_00182at 189.505 kb on - strand, within MPMX20_00182at 189.506 kb on - strand, within MPMX20_00182at 189.519 kb on + strand, within MPMX20_00182at 189.522 kb on - strand, within MPMX20_00182at 189.531 kb on + strand, within MPMX20_00182at 189.542 kb on + strand, within MPMX20_00182at 189.566 kb on + strand, within MPMX20_00182at 189.639 kb on - strand, within MPMX20_00182at 189.671 kb on + strand, within MPMX20_00182at 189.671 kb on + strand, within MPMX20_00182at 189.671 kb on + strand, within MPMX20_00182at 189.671 kb on + strand, within MPMX20_00182at 189.671 kb on + strand, within MPMX20_00182at 189.674 kb on - strand, within MPMX20_00182at 189.676 kb on + strand, within MPMX20_00182at 189.676 kb on + strand, within MPMX20_00182at 189.676 kb on + strand, within MPMX20_00182at 189.676 kb on + strand, within MPMX20_00182at 189.676 kb on + strand, within MPMX20_00182at 189.679 kb on - strand, within MPMX20_00182at 189.751 kb on - strand, within MPMX20_00182at 189.751 kb on - strand, within MPMX20_00182at 189.756 kb on - strand, within MPMX20_00182at 189.761 kb on - strand, within MPMX20_00182at 189.761 kb on - strand, within MPMX20_00182at 189.767 kb on + strand, within MPMX20_00182at 189.767 kb on + strand, within MPMX20_00182at 189.775 kb on - strand, within MPMX20_00182at 189.775 kb on - strand, within MPMX20_00182at 189.788 kb on + strand, within MPMX20_00182at 189.813 kb on + strand, within MPMX20_00182at 189.813 kb on + strand, within MPMX20_00182at 189.813 kb on + strand, within MPMX20_00182at 189.813 kb on + strand, within MPMX20_00182at 189.813 kb on + strand, within MPMX20_00182at 189.820 kb on + strand, within MPMX20_00182at 189.821 kb on - strand, within MPMX20_00182at 189.821 kb on - strand, within MPMX20_00182at 189.823 kb on + strand, within MPMX20_00182at 189.833 kb on + strandat 189.837 kb on + strandat 189.847 kb on + strandat 189.852 kb on + strandat 189.852 kb on + strandat 189.855 kb on - strandat 189.857 kb on + strandat 189.860 kb on - strandat 189.937 kb on - strandat 190.007 kb on - strandat 190.008 kb on - strandat 190.022 kb on - strandat 190.054 kb on + strandat 190.054 kb on + strandat 190.054 kb on + strandat 190.054 kb on + strandat 190.054 kb on + strandat 190.057 kb on - strandat 190.062 kb on - strandat 190.062 kb on - strandat 190.062 kb on - strandat 190.062 kb on - strandat 190.062 kb on - strandat 190.062 kb on - strandat 190.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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187,115 + MPMX20_00179 0.87 -3.0
187,118 - MPMX20_00179 0.88 -0.3
187,118 - MPMX20_00179 0.88 +0.4
187,123 - MPMX20_00179 0.88 -1.0
187,127 - MPMX20_00179 0.89 -1.9
187,143 + +2.4
187,153 + +1.2
187,222 + -0.6
187,234 + +0.1
187,242 - -1.9
187,346 + MPMX20_00180 0.15 -0.4
187,354 - MPMX20_00180 0.16 -0.7
187,354 - MPMX20_00180 0.16 -2.3
187,354 - MPMX20_00180 0.16 -2.2
187,354 - MPMX20_00180 0.16 -0.2
187,489 - MPMX20_00180 0.34 +1.4
187,599 + MPMX20_00180 0.48 +1.8
187,599 + MPMX20_00180 0.48 -0.7
187,628 + MPMX20_00180 0.52 +0.1
187,710 - MPMX20_00180 0.63 +2.8
187,724 - MPMX20_00180 0.65 -0.2
187,730 + MPMX20_00180 0.66 -2.9
187,730 + MPMX20_00180 0.66 -0.2
187,730 + MPMX20_00180 0.66 -0.5
187,730 + MPMX20_00180 0.66 +2.4
187,730 + MPMX20_00180 0.66 +0.1
187,730 + MPMX20_00180 0.66 -2.4
187,730 + MPMX20_00180 0.66 -0.1
187,730 + MPMX20_00180 0.66 -1.7
187,730 + MPMX20_00180 0.66 +0.7
187,730 + MPMX20_00180 0.66 -2.2
187,730 + MPMX20_00180 0.66 -0.2
187,730 + MPMX20_00180 0.66 +4.5
187,735 + MPMX20_00180 0.67 -3.4
187,735 + MPMX20_00180 0.67 +0.3
187,737 + MPMX20_00180 0.67 -0.6
187,738 - MPMX20_00180 0.67 +1.3
187,738 - MPMX20_00180 0.67 -3.8
187,738 - MPMX20_00180 0.67 -2.7
187,738 - MPMX20_00180 0.67 +0.0
187,738 - MPMX20_00180 0.67 -3.0
187,738 - MPMX20_00180 0.67 +0.1
187,738 - MPMX20_00180 0.67 -1.1
187,738 - MPMX20_00180 0.67 -1.0
187,738 - MPMX20_00180 0.67 -0.7
187,738 - MPMX20_00180 0.67 +3.0
187,738 - MPMX20_00180 0.67 +0.2
187,738 - MPMX20_00180 0.67 +1.4
187,743 - MPMX20_00180 0.68 -2.8
187,753 + MPMX20_00180 0.69 +1.7
187,753 + MPMX20_00180 0.69 +0.4
187,753 + MPMX20_00180 0.69 +1.8
187,753 + MPMX20_00180 0.69 +0.9
187,761 - MPMX20_00180 0.70 +1.8
187,761 - MPMX20_00180 0.70 +2.1
187,761 - MPMX20_00180 0.70 -0.2
187,810 - MPMX20_00180 0.77 -2.1
187,848 + MPMX20_00180 0.82 -0.4
187,856 - MPMX20_00180 0.83 -0.2
187,938 - -0.0
187,940 + -0.0
188,158 + -0.6
188,260 - MPMX20_00181 0.17 -0.2
188,278 - MPMX20_00181 0.19 -2.1
188,299 + MPMX20_00181 0.21 -2.4
188,299 + MPMX20_00181 0.21 -0.2
188,299 + MPMX20_00181 0.21 +1.4
188,299 + MPMX20_00181 0.21 +1.4
188,299 + MPMX20_00181 0.21 -1.3
188,307 - MPMX20_00181 0.21 -0.6
188,366 + MPMX20_00181 0.27 -1.3
188,390 + MPMX20_00181 0.30 -1.2
188,406 + MPMX20_00181 0.31 +0.6
188,414 - MPMX20_00181 0.32 +0.4
188,434 - MPMX20_00181 0.34 +0.4
188,476 + MPMX20_00181 0.38 -2.1
188,483 - MPMX20_00181 0.39 -1.1
188,535 - MPMX20_00181 0.44 -2.0
188,535 - MPMX20_00181 0.44 -0.6
188,692 + MPMX20_00181 0.59 -4.2
188,701 + MPMX20_00181 0.60 -1.4
188,709 - MPMX20_00181 0.61 -1.3
188,709 - MPMX20_00181 0.61 -1.4
188,711 - MPMX20_00181 0.61 -1.2
188,760 + MPMX20_00181 0.66 -0.2
188,765 + MPMX20_00181 0.66 -1.3
188,798 + MPMX20_00181 0.70 -0.8
188,851 + MPMX20_00181 0.75 -2.8
188,867 + MPMX20_00181 0.76 +0.1
188,875 - MPMX20_00181 0.77 -0.6
188,918 - MPMX20_00181 0.82 +0.1
188,930 - MPMX20_00181 0.83 +0.1
188,943 + MPMX20_00181 0.84 -1.0
188,966 + MPMX20_00181 0.86 +1.4
188,966 + MPMX20_00181 0.86 -3.6
189,090 + -0.2
189,090 + -1.0
189,130 + -1.4
189,173 - -2.0
189,208 + -1.6
189,208 + -2.1
189,221 + +0.5
189,266 + -0.5
189,266 + -0.1
189,266 + +1.5
189,274 - +3.6
189,278 + -0.2
189,402 - MPMX20_00182 0.26 +2.0
189,410 + MPMX20_00182 0.27 -2.4
189,470 - MPMX20_00182 0.36 -0.5
189,470 - MPMX20_00182 0.36 -0.0
189,505 - MPMX20_00182 0.41 -0.9
189,505 - MPMX20_00182 0.41 +0.0
189,506 - MPMX20_00182 0.42 -0.2
189,519 + MPMX20_00182 0.44 +0.6
189,522 - MPMX20_00182 0.44 -0.4
189,531 + MPMX20_00182 0.45 -2.8
189,542 + MPMX20_00182 0.47 -1.8
189,566 + MPMX20_00182 0.51 -3.6
189,639 - MPMX20_00182 0.62 -2.8
189,671 + MPMX20_00182 0.67 -0.9
189,671 + MPMX20_00182 0.67 +0.7
189,671 + MPMX20_00182 0.67 -0.2
189,671 + MPMX20_00182 0.67 +0.6
189,671 + MPMX20_00182 0.67 -0.6
189,674 - MPMX20_00182 0.67 -2.3
189,676 + MPMX20_00182 0.67 +2.1
189,676 + MPMX20_00182 0.67 -0.5
189,676 + MPMX20_00182 0.67 -2.0
189,676 + MPMX20_00182 0.67 -0.6
189,676 + MPMX20_00182 0.67 +1.4
189,679 - MPMX20_00182 0.68 -1.8
189,751 - MPMX20_00182 0.79 -0.0
189,751 - MPMX20_00182 0.79 +2.7
189,756 - MPMX20_00182 0.79 -2.2
189,761 - MPMX20_00182 0.80 -2.1
189,761 - MPMX20_00182 0.80 +2.0
189,767 + MPMX20_00182 0.81 -1.4
189,767 + MPMX20_00182 0.81 -0.0
189,775 - MPMX20_00182 0.82 +0.3
189,775 - MPMX20_00182 0.82 -0.7
189,788 + MPMX20_00182 0.84 +0.2
189,813 + MPMX20_00182 0.88 -3.0
189,813 + MPMX20_00182 0.88 -1.8
189,813 + MPMX20_00182 0.88 +2.0
189,813 + MPMX20_00182 0.88 -3.0
189,813 + MPMX20_00182 0.88 -0.7
189,820 + MPMX20_00182 0.89 -1.4
189,821 - MPMX20_00182 0.89 +1.1
189,821 - MPMX20_00182 0.89 +0.1
189,823 + MPMX20_00182 0.89 -0.9
189,833 + -1.8
189,837 + -0.1
189,847 + +0.5
189,852 + -1.3
189,852 + -0.6
189,855 - +1.4
189,857 + +2.4
189,860 - +0.5
189,937 - -2.7
190,007 - -1.6
190,008 - -0.3
190,022 - +0.4
190,054 + -0.6
190,054 + +0.3
190,054 + -0.5
190,054 + +1.7
190,054 + -0.9
190,057 - +0.7
190,062 - +1.1
190,062 - -1.6
190,062 - -0.3
190,062 - +2.1
190,062 - +1.0
190,062 - -0.3
190,062 - -0.6

Or see this region's nucleotide sequence