Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00055

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00054 and MPMX20_00055 are separated by 27 nucleotidesMPMX20_00055 and MPMX20_00056 are separated by 131 nucleotides MPMX20_00054: MPMX20_00054 - Catabolite control protein A, at 53,510 to 54,460 _00054 MPMX20_00055: MPMX20_00055 - hypothetical protein, at 54,488 to 54,784 _00055 MPMX20_00056: MPMX20_00056 - Outer membrane protein OprM, at 54,916 to 56,280 _00056 Position (kb) 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 53.548 kb on + strandat 53.548 kb on + strandat 53.548 kb on + strandat 53.569 kb on + strandat 53.589 kb on + strandat 53.597 kb on - strandat 53.597 kb on - strandat 53.602 kb on - strandat 53.605 kb on + strand, within MPMX20_00054at 53.665 kb on + strand, within MPMX20_00054at 53.669 kb on + strand, within MPMX20_00054at 53.669 kb on + strand, within MPMX20_00054at 53.669 kb on + strand, within MPMX20_00054at 53.691 kb on + strand, within MPMX20_00054at 53.696 kb on + strand, within MPMX20_00054at 53.696 kb on + strand, within MPMX20_00054at 53.726 kb on - strand, within MPMX20_00054at 53.768 kb on - strand, within MPMX20_00054at 53.869 kb on - strand, within MPMX20_00054at 53.902 kb on + strand, within MPMX20_00054at 53.910 kb on - strand, within MPMX20_00054at 53.930 kb on - strand, within MPMX20_00054at 53.930 kb on - strand, within MPMX20_00054at 53.933 kb on - strand, within MPMX20_00054at 54.002 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.026 kb on - strand, within MPMX20_00054at 54.031 kb on - strand, within MPMX20_00054at 54.073 kb on - strand, within MPMX20_00054at 54.139 kb on + strand, within MPMX20_00054at 54.155 kb on + strand, within MPMX20_00054at 54.174 kb on - strand, within MPMX20_00054at 54.233 kb on + strand, within MPMX20_00054at 54.276 kb on + strand, within MPMX20_00054at 54.284 kb on - strand, within MPMX20_00054at 54.285 kb on - strand, within MPMX20_00054at 54.292 kb on - strand, within MPMX20_00054at 54.403 kb on + strandat 54.409 kb on + strandat 54.411 kb on + strandat 54.411 kb on + strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.428 kb on + strandat 54.479 kb on + strandat 54.551 kb on + strand, within MPMX20_00055at 54.559 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.659 kb on + strand, within MPMX20_00055at 54.727 kb on + strand, within MPMX20_00055at 54.728 kb on + strand, within MPMX20_00055at 54.755 kb on - strandat 54.760 kb on + strandat 54.768 kb on - strandat 54.769 kb on + strandat 54.772 kb on - strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.838 kb on + strandat 54.846 kb on - strandat 54.925 kb on - strandat 54.926 kb on + strandat 54.937 kb on - strandat 54.948 kb on + strandat 54.983 kb on - strandat 54.983 kb on - strandat 55.001 kb on + strandat 55.002 kb on - strandat 55.006 kb on + strandat 55.056 kb on + strand, within MPMX20_00056at 55.056 kb on + strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.227 kb on + strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.272 kb on + strand, within MPMX20_00056at 55.279 kb on + strand, within MPMX20_00056at 55.288 kb on - strand, within MPMX20_00056at 55.290 kb on - strand, within MPMX20_00056at 55.323 kb on + strand, within MPMX20_00056at 55.400 kb on + strand, within MPMX20_00056at 55.467 kb on + strand, within MPMX20_00056at 55.530 kb on - strand, within MPMX20_00056at 55.630 kb on + strand, within MPMX20_00056at 55.701 kb on + strand, within MPMX20_00056at 55.729 kb on + strand, within MPMX20_00056at 55.739 kb on + strand, within MPMX20_00056

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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53,548 + -1.5
53,548 + -2.5
53,548 + -1.3
53,569 + -1.3
53,589 + -1.1
53,597 - -4.0
53,597 - -2.1
53,602 - -0.1
53,605 + MPMX20_00054 0.10 -2.5
53,665 + MPMX20_00054 0.16 -1.8
53,669 + MPMX20_00054 0.17 -1.2
53,669 + MPMX20_00054 0.17 +0.9
53,669 + MPMX20_00054 0.17 -0.2
53,691 + MPMX20_00054 0.19 -0.8
53,696 + MPMX20_00054 0.20 +0.3
53,696 + MPMX20_00054 0.20 -3.5
53,726 - MPMX20_00054 0.23 -0.5
53,768 - MPMX20_00054 0.27 -0.2
53,869 - MPMX20_00054 0.38 -0.4
53,902 + MPMX20_00054 0.41 -0.4
53,910 - MPMX20_00054 0.42 -0.2
53,930 - MPMX20_00054 0.44 -2.2
53,930 - MPMX20_00054 0.44 -1.4
53,933 - MPMX20_00054 0.44 +0.4
54,002 + MPMX20_00054 0.52 +1.7
54,023 + MPMX20_00054 0.54 -1.0
54,023 + MPMX20_00054 0.54 -2.1
54,023 + MPMX20_00054 0.54 -3.2
54,023 + MPMX20_00054 0.54 -2.4
54,023 + MPMX20_00054 0.54 -2.2
54,023 + MPMX20_00054 0.54 -2.6
54,026 - MPMX20_00054 0.54 +1.2
54,031 - MPMX20_00054 0.55 -2.4
54,073 - MPMX20_00054 0.59 -0.3
54,139 + MPMX20_00054 0.66 +0.5
54,155 + MPMX20_00054 0.68 -1.1
54,174 - MPMX20_00054 0.70 +3.4
54,233 + MPMX20_00054 0.76 -0.4
54,276 + MPMX20_00054 0.81 -0.9
54,284 - MPMX20_00054 0.81 -0.8
54,285 - MPMX20_00054 0.81 -1.8
54,292 - MPMX20_00054 0.82 -0.6
54,403 + +0.7
54,409 + +1.2
54,411 + +0.6
54,411 + +1.9
54,419 - -0.8
54,419 - -2.4
54,419 - -1.6
54,428 + +1.2
54,479 + -2.4
54,551 + MPMX20_00055 0.21 -2.6
54,559 - MPMX20_00055 0.24 +2.4
54,656 - MPMX20_00055 0.57 -1.5
54,656 - MPMX20_00055 0.57 -0.3
54,656 - MPMX20_00055 0.57 +0.8
54,656 - MPMX20_00055 0.57 +5.2
54,659 + MPMX20_00055 0.58 +0.1
54,727 + MPMX20_00055 0.80 +1.9
54,728 + MPMX20_00055 0.81 -0.1
54,755 - -3.1
54,760 + +0.6
54,768 - +0.9
54,769 + +1.4
54,772 - +2.9
54,801 + -2.5
54,801 + +0.0
54,801 + +1.7
54,838 + +0.4
54,846 - +0.0
54,925 - +2.9
54,926 + +1.2
54,937 - -0.1
54,948 + +3.5
54,983 - +1.9
54,983 - -0.4
55,001 + +0.1
55,002 - -1.2
55,006 + -1.3
55,056 + MPMX20_00056 0.10 -1.9
55,056 + MPMX20_00056 0.10 +0.9
55,064 - MPMX20_00056 0.11 -2.8
55,064 - MPMX20_00056 0.11 +0.0
55,064 - MPMX20_00056 0.11 -1.4
55,227 + MPMX20_00056 0.23 -0.8
55,270 - MPMX20_00056 0.26 +1.1
55,270 - MPMX20_00056 0.26 -0.2
55,272 + MPMX20_00056 0.26 +0.5
55,279 + MPMX20_00056 0.27 -0.9
55,288 - MPMX20_00056 0.27 +1.4
55,290 - MPMX20_00056 0.27 -2.3
55,323 + MPMX20_00056 0.30 -1.9
55,400 + MPMX20_00056 0.35 +0.9
55,467 + MPMX20_00056 0.40 -0.4
55,530 - MPMX20_00056 0.45 -0.6
55,630 + MPMX20_00056 0.52 -1.0
55,701 + MPMX20_00056 0.58 -1.2
55,729 + MPMX20_00056 0.60 +0.4
55,739 + MPMX20_00056 0.60 -0.4

Or see this region's nucleotide sequence