Experiment: TSB plate, 1:1 coculture with Chryseobacterium_proteolyticum_TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02151 and MPMX20_02152 are separated by 26 nucleotides MPMX20_02152 and MPMX20_02153 are separated by 138 nucleotides
MPMX20_02151: MPMX20_02151 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 2,242,849 to 2,244,054
_02151
MPMX20_02152: MPMX20_02152 - Phenylacetate-coenzyme A ligase, at 2,244,081 to 2,245,397
_02152
MPMX20_02153: MPMX20_02153 - Transcriptional repressor PaaX, at 2,245,536 to 2,246,462
_02153
Position (kb)
2244
2245
2246 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2243.087 kb on - strand, within MPMX20_02151 at 2243.097 kb on - strand, within MPMX20_02151 at 2243.120 kb on + strand, within MPMX20_02151 at 2243.128 kb on - strand, within MPMX20_02151 at 2243.154 kb on + strand, within MPMX20_02151 at 2243.229 kb on + strand, within MPMX20_02151 at 2243.237 kb on - strand, within MPMX20_02151 at 2243.286 kb on - strand, within MPMX20_02151 at 2243.526 kb on - strand, within MPMX20_02151 at 2243.548 kb on - strand, within MPMX20_02151 at 2243.606 kb on + strand, within MPMX20_02151 at 2243.606 kb on + strand, within MPMX20_02151 at 2243.614 kb on - strand, within MPMX20_02151 at 2243.666 kb on + strand, within MPMX20_02151 at 2243.672 kb on + strand, within MPMX20_02151 at 2243.680 kb on - strand, within MPMX20_02151 at 2243.733 kb on - strand, within MPMX20_02151 at 2243.743 kb on - strand, within MPMX20_02151 at 2243.743 kb on - strand, within MPMX20_02151 at 2243.804 kb on + strand, within MPMX20_02151 at 2243.883 kb on + strand, within MPMX20_02151 at 2243.941 kb on + strand at 2243.946 kb on + strand at 2243.987 kb on + strand at 2244.002 kb on - strand at 2244.005 kb on - strand at 2244.006 kb on + strand at 2244.006 kb on + strand at 2244.013 kb on + strand at 2244.019 kb on + strand at 2244.019 kb on + strand at 2244.019 kb on + strand at 2244.019 kb on + strand at 2244.027 kb on - strand at 2244.027 kb on - strand at 2244.027 kb on - strand at 2244.105 kb on - strand at 2244.130 kb on + strand at 2244.170 kb on + strand at 2244.178 kb on - strand at 2244.229 kb on + strand, within MPMX20_02152 at 2244.277 kb on + strand, within MPMX20_02152 at 2244.283 kb on + strand, within MPMX20_02152 at 2244.283 kb on + strand, within MPMX20_02152 at 2244.285 kb on - strand, within MPMX20_02152 at 2244.285 kb on - strand, within MPMX20_02152 at 2244.285 kb on - strand, within MPMX20_02152 at 2244.290 kb on - strand, within MPMX20_02152 at 2244.291 kb on - strand, within MPMX20_02152 at 2244.291 kb on - strand, within MPMX20_02152 at 2244.346 kb on - strand, within MPMX20_02152 at 2244.348 kb on + strand, within MPMX20_02152 at 2244.367 kb on + strand, within MPMX20_02152 at 2244.377 kb on + strand, within MPMX20_02152 at 2244.391 kb on + strand, within MPMX20_02152 at 2244.418 kb on + strand, within MPMX20_02152 at 2244.439 kb on - strand, within MPMX20_02152 at 2244.508 kb on - strand, within MPMX20_02152 at 2244.508 kb on - strand, within MPMX20_02152 at 2244.524 kb on + strand, within MPMX20_02152 at 2244.643 kb on + strand, within MPMX20_02152 at 2244.674 kb on + strand, within MPMX20_02152 at 2244.806 kb on + strand, within MPMX20_02152 at 2244.947 kb on - strand, within MPMX20_02152 at 2244.949 kb on - strand, within MPMX20_02152 at 2244.956 kb on + strand, within MPMX20_02152 at 2244.964 kb on - strand, within MPMX20_02152 at 2244.999 kb on - strand, within MPMX20_02152 at 2245.021 kb on - strand, within MPMX20_02152 at 2245.021 kb on - strand, within MPMX20_02152 at 2245.094 kb on + strand, within MPMX20_02152 at 2245.139 kb on + strand, within MPMX20_02152 at 2245.222 kb on + strand, within MPMX20_02152 at 2245.230 kb on - strand, within MPMX20_02152 at 2245.230 kb on - strand, within MPMX20_02152 at 2245.230 kb on - strand, within MPMX20_02152 at 2245.258 kb on + strand, within MPMX20_02152 at 2245.258 kb on + strand, within MPMX20_02152 at 2245.258 kb on + strand, within MPMX20_02152 at 2245.266 kb on - strand at 2245.266 kb on - strand at 2245.266 kb on - strand at 2245.290 kb on + strand at 2245.354 kb on - strand at 2245.354 kb on - strand at 2245.408 kb on + strand at 2245.427 kb on + strand at 2245.470 kb on - strand at 2245.506 kb on - strand at 2245.552 kb on + strand at 2245.560 kb on - strand at 2245.560 kb on - strand at 2245.560 kb on - strand at 2245.578 kb on + strand at 2245.689 kb on - strand, within MPMX20_02153 at 2245.713 kb on + strand, within MPMX20_02153 at 2245.820 kb on + strand, within MPMX20_02153 at 2245.841 kb on + strand, within MPMX20_02153 at 2245.844 kb on + strand, within MPMX20_02153 at 2246.097 kb on - strand, within MPMX20_02153 at 2246.266 kb on - strand, within MPMX20_02153 at 2246.283 kb on + strand, within MPMX20_02153 at 2246.293 kb on - strand, within MPMX20_02153 at 2246.306 kb on - strand, within MPMX20_02153 at 2246.308 kb on + strand, within MPMX20_02153 at 2246.322 kb on - strand, within MPMX20_02153 at 2246.385 kb on + strand at 2246.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Chryseobacterium_proteolyticum_TBS_027 remove 2,243,087 - MPMX20_02151 0.20 +0.9 2,243,097 - MPMX20_02151 0.21 -1.3 2,243,120 + MPMX20_02151 0.22 -0.8 2,243,128 - MPMX20_02151 0.23 -0.4 2,243,154 + MPMX20_02151 0.25 -0.3 2,243,229 + MPMX20_02151 0.32 -1.9 2,243,237 - MPMX20_02151 0.32 -1.0 2,243,286 - MPMX20_02151 0.36 -1.2 2,243,526 - MPMX20_02151 0.56 +1.3 2,243,548 - MPMX20_02151 0.58 -0.5 2,243,606 + MPMX20_02151 0.63 -2.5 2,243,606 + MPMX20_02151 0.63 -1.0 2,243,614 - MPMX20_02151 0.63 -1.6 2,243,666 + MPMX20_02151 0.68 +0.5 2,243,672 + MPMX20_02151 0.68 -0.7 2,243,680 - MPMX20_02151 0.69 -0.6 2,243,733 - MPMX20_02151 0.73 +0.0 2,243,743 - MPMX20_02151 0.74 -1.8 2,243,743 - MPMX20_02151 0.74 -0.3 2,243,804 + MPMX20_02151 0.79 -2.8 2,243,883 + MPMX20_02151 0.86 -1.7 2,243,941 + +0.0 2,243,946 + -0.4 2,243,987 + +0.6 2,244,002 - -0.8 2,244,005 - -1.7 2,244,006 + -0.0 2,244,006 + +1.5 2,244,013 + -0.4 2,244,019 + +1.5 2,244,019 + -0.5 2,244,019 + -1.8 2,244,019 + +2.0 2,244,027 - -0.7 2,244,027 - -1.3 2,244,027 - -3.0 2,244,105 - +0.2 2,244,130 + -1.4 2,244,170 + -1.7 2,244,178 - -2.1 2,244,229 + MPMX20_02152 0.11 -0.4 2,244,277 + MPMX20_02152 0.15 -1.3 2,244,283 + MPMX20_02152 0.15 +2.3 2,244,283 + MPMX20_02152 0.15 +0.4 2,244,285 - MPMX20_02152 0.15 +0.9 2,244,285 - MPMX20_02152 0.15 +0.1 2,244,285 - MPMX20_02152 0.15 +0.9 2,244,290 - MPMX20_02152 0.16 -0.0 2,244,291 - MPMX20_02152 0.16 -1.3 2,244,291 - MPMX20_02152 0.16 +0.2 2,244,346 - MPMX20_02152 0.20 -1.8 2,244,348 + MPMX20_02152 0.20 -0.5 2,244,367 + MPMX20_02152 0.22 -0.5 2,244,377 + MPMX20_02152 0.22 -1.4 2,244,391 + MPMX20_02152 0.24 -1.5 2,244,418 + MPMX20_02152 0.26 -1.7 2,244,439 - MPMX20_02152 0.27 -2.3 2,244,508 - MPMX20_02152 0.32 -2.4 2,244,508 - MPMX20_02152 0.32 -0.4 2,244,524 + MPMX20_02152 0.34 -1.0 2,244,643 + MPMX20_02152 0.43 +0.0 2,244,674 + MPMX20_02152 0.45 +0.5 2,244,806 + MPMX20_02152 0.55 -2.3 2,244,947 - MPMX20_02152 0.66 -3.1 2,244,949 - MPMX20_02152 0.66 +0.3 2,244,956 + MPMX20_02152 0.66 -2.2 2,244,964 - MPMX20_02152 0.67 -0.5 2,244,999 - MPMX20_02152 0.70 -2.2 2,245,021 - MPMX20_02152 0.71 -0.5 2,245,021 - MPMX20_02152 0.71 +1.3 2,245,094 + MPMX20_02152 0.77 +0.5 2,245,139 + MPMX20_02152 0.80 +1.1 2,245,222 + MPMX20_02152 0.87 -1.4 2,245,230 - MPMX20_02152 0.87 -2.3 2,245,230 - MPMX20_02152 0.87 -1.3 2,245,230 - MPMX20_02152 0.87 -0.8 2,245,258 + MPMX20_02152 0.89 -2.1 2,245,258 + MPMX20_02152 0.89 +0.7 2,245,258 + MPMX20_02152 0.89 -0.5 2,245,266 - -0.9 2,245,266 - -0.8 2,245,266 - -0.7 2,245,290 + -0.8 2,245,354 - +2.0 2,245,354 - -0.3 2,245,408 + -1.9 2,245,427 + -1.3 2,245,470 - -1.0 2,245,506 - -0.6 2,245,552 + +1.5 2,245,560 - +0.3 2,245,560 - -1.0 2,245,560 - -1.1 2,245,578 + -0.8 2,245,689 - MPMX20_02153 0.17 +2.8 2,245,713 + MPMX20_02153 0.19 -0.3 2,245,820 + MPMX20_02153 0.31 +0.5 2,245,841 + MPMX20_02153 0.33 +1.6 2,245,844 + MPMX20_02153 0.33 -2.1 2,246,097 - MPMX20_02153 0.61 -2.0 2,246,266 - MPMX20_02153 0.79 +1.0 2,246,283 + MPMX20_02153 0.81 -0.7 2,246,293 - MPMX20_02153 0.82 -1.0 2,246,306 - MPMX20_02153 0.83 +0.2 2,246,308 + MPMX20_02153 0.83 -1.2 2,246,322 - MPMX20_02153 0.85 -0.2 2,246,385 + -0.7 2,246,393 - +0.2
Or see this region's nucleotide sequence