Experiment: TSB plate, 1:1 coculture with Chryseobacterium_proteolyticum_TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00917 and MPMX20_00918 are separated by 6 nucleotides MPMX20_00918 and MPMX20_00919 are separated by 10 nucleotides MPMX20_00919 and MPMX20_00920 overlap by 1 nucleotides MPMX20_00920 and MPMX20_00921 are separated by 101 nucleotides
MPMX20_00917: MPMX20_00917 - Na(+)-translocating NADH-quinone reductase subunit D, at 966,469 to 967,107
_00917
MPMX20_00918: MPMX20_00918 - Na(+)-translocating NADH-quinone reductase subunit E, at 967,114 to 967,710
_00918
MPMX20_00919: MPMX20_00919 - Na(+)-translocating NADH-quinone reductase subunit F, at 967,721 to 968,944
_00919
MPMX20_00920: MPMX20_00920 - hypothetical protein, at 968,944 to 969,147
_00920
MPMX20_00921: MPMX20_00921 - DNA polymerase IV, at 969,249 to 970,307
_00921
Position (kb) 967
968
969 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 966.910 kb on - strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.972 kb on + strand, within MPMX20_00917 at 966.978 kb on - strand, within MPMX20_00917 at 966.978 kb on - strand, within MPMX20_00917 at 966.982 kb on + strand, within MPMX20_00917 at 967.067 kb on - strand at 967.082 kb on + strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.141 kb on + strand at 967.234 kb on - strand, within MPMX20_00918 at 967.295 kb on + strand, within MPMX20_00918 at 967.296 kb on - strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.391 kb on + strand, within MPMX20_00918 at 967.392 kb on - strand, within MPMX20_00918 at 967.428 kb on + strand, within MPMX20_00918 at 967.628 kb on - strand, within MPMX20_00918 at 967.637 kb on + strand, within MPMX20_00918 at 967.637 kb on + strand, within MPMX20_00918 at 967.637 kb on + strand, within MPMX20_00918 at 967.645 kb on - strand, within MPMX20_00918 at 967.656 kb on - strand at 967.704 kb on + strand at 967.712 kb on - strand at 967.746 kb on + strand at 967.778 kb on - strand at 967.926 kb on + strand, within MPMX20_00919 at 967.949 kb on - strand, within MPMX20_00919 at 967.975 kb on + strand, within MPMX20_00919 at 968.027 kb on + strand, within MPMX20_00919 at 968.032 kb on + strand, within MPMX20_00919 at 968.039 kb on + strand, within MPMX20_00919 at 968.171 kb on - strand, within MPMX20_00919 at 968.208 kb on - strand, within MPMX20_00919 at 968.258 kb on + strand, within MPMX20_00919 at 968.278 kb on + strand, within MPMX20_00919 at 968.286 kb on - strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.422 kb on + strand, within MPMX20_00919 at 968.504 kb on - strand, within MPMX20_00919 at 968.602 kb on + strand, within MPMX20_00919 at 968.646 kb on + strand, within MPMX20_00919 at 968.778 kb on - strand, within MPMX20_00919 at 968.861 kb on + strand at 968.861 kb on + strand at 969.019 kb on - strand, within MPMX20_00920 at 969.029 kb on - strand, within MPMX20_00920 at 969.041 kb on + strand, within MPMX20_00920 at 969.041 kb on + strand, within MPMX20_00920 at 969.044 kb on - strand, within MPMX20_00920 at 969.044 kb on - strand, within MPMX20_00920 at 969.086 kb on + strand, within MPMX20_00920 at 969.086 kb on + strand, within MPMX20_00920 at 969.088 kb on + strand, within MPMX20_00920 at 969.094 kb on - strand, within MPMX20_00920 at 969.147 kb on - strand at 969.156 kb on + strand at 969.169 kb on + strand at 969.177 kb on - strand at 969.182 kb on + strand at 969.240 kb on + strand at 969.302 kb on - strand at 969.357 kb on - strand, within MPMX20_00921 at 969.357 kb on - strand, within MPMX20_00921 at 969.357 kb on - strand, within MPMX20_00921 at 969.362 kb on - strand, within MPMX20_00921 at 969.376 kb on - strand, within MPMX20_00921 at 969.380 kb on + strand, within MPMX20_00921 at 969.380 kb on + strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.407 kb on + strand, within MPMX20_00921 at 969.420 kb on - strand, within MPMX20_00921 at 969.424 kb on + strand, within MPMX20_00921 at 969.440 kb on + strand, within MPMX20_00921 at 969.526 kb on + strand, within MPMX20_00921 at 969.534 kb on - strand, within MPMX20_00921 at 969.554 kb on + strand, within MPMX20_00921 at 969.562 kb on - strand, within MPMX20_00921 at 969.565 kb on + strand, within MPMX20_00921 at 969.582 kb on + strand, within MPMX20_00921 at 969.585 kb on - strand, within MPMX20_00921 at 969.587 kb on + strand, within MPMX20_00921 at 969.609 kb on - strand, within MPMX20_00921 at 969.636 kb on + strand, within MPMX20_00921 at 969.703 kb on + strand, within MPMX20_00921 at 969.719 kb on + strand, within MPMX20_00921 at 969.731 kb on + strand, within MPMX20_00921 at 969.734 kb on - strand, within MPMX20_00921 at 969.750 kb on - strand, within MPMX20_00921 at 969.750 kb on - strand, within MPMX20_00921 at 969.753 kb on + strand, within MPMX20_00921 at 969.761 kb on - strand, within MPMX20_00921 at 969.889 kb on - strand, within MPMX20_00921 at 969.931 kb on + strand, within MPMX20_00921 at 969.939 kb on - strand, within MPMX20_00921
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Chryseobacterium_proteolyticum_TBS_027 remove 966,910 - MPMX20_00917 0.69 -0.4 966,910 - MPMX20_00917 0.69 -1.0 966,910 - MPMX20_00917 0.69 -0.5 966,972 + MPMX20_00917 0.79 -1.1 966,978 - MPMX20_00917 0.80 +3.1 966,978 - MPMX20_00917 0.80 -0.7 966,982 + MPMX20_00917 0.80 -0.9 967,067 - +0.2 967,082 + -1.9 967,090 - -2.5 967,090 - +0.9 967,090 - -1.8 967,141 + -0.3 967,234 - MPMX20_00918 0.20 -1.5 967,295 + MPMX20_00918 0.30 -0.4 967,296 - MPMX20_00918 0.30 -3.3 967,320 + MPMX20_00918 0.35 -1.3 967,320 + MPMX20_00918 0.35 -1.7 967,320 + MPMX20_00918 0.35 -3.0 967,391 + MPMX20_00918 0.46 -0.9 967,392 - MPMX20_00918 0.47 +0.4 967,428 + MPMX20_00918 0.53 +0.4 967,628 - MPMX20_00918 0.86 +0.8 967,637 + MPMX20_00918 0.88 +0.3 967,637 + MPMX20_00918 0.88 -1.8 967,637 + MPMX20_00918 0.88 -1.8 967,645 - MPMX20_00918 0.89 -0.9 967,656 - -0.3 967,704 + -2.2 967,712 - -1.4 967,746 + -0.5 967,778 - +0.5 967,926 + MPMX20_00919 0.17 -1.1 967,949 - MPMX20_00919 0.19 -0.9 967,975 + MPMX20_00919 0.21 +0.8 968,027 + MPMX20_00919 0.25 +0.8 968,032 + MPMX20_00919 0.25 -1.1 968,039 + MPMX20_00919 0.26 -1.1 968,171 - MPMX20_00919 0.37 -2.8 968,208 - MPMX20_00919 0.40 -0.2 968,258 + MPMX20_00919 0.44 -1.1 968,278 + MPMX20_00919 0.46 -1.7 968,286 - MPMX20_00919 0.46 -0.1 968,372 + MPMX20_00919 0.53 -0.4 968,372 + MPMX20_00919 0.53 -0.9 968,372 + MPMX20_00919 0.53 +0.3 968,422 + MPMX20_00919 0.57 -3.6 968,504 - MPMX20_00919 0.64 -0.4 968,602 + MPMX20_00919 0.72 -0.2 968,646 + MPMX20_00919 0.76 -1.5 968,778 - MPMX20_00919 0.86 -1.8 968,861 + -0.3 968,861 + -1.7 969,019 - MPMX20_00920 0.37 -1.9 969,029 - MPMX20_00920 0.42 -1.6 969,041 + MPMX20_00920 0.48 -2.7 969,041 + MPMX20_00920 0.48 +1.3 969,044 - MPMX20_00920 0.49 -2.8 969,044 - MPMX20_00920 0.49 -1.2 969,086 + MPMX20_00920 0.70 -0.3 969,086 + MPMX20_00920 0.70 -1.3 969,088 + MPMX20_00920 0.71 +1.5 969,094 - MPMX20_00920 0.74 +0.8 969,147 - +0.6 969,156 + +1.6 969,169 + -1.1 969,177 - -0.9 969,182 + +0.1 969,240 + +2.2 969,302 - -1.9 969,357 - MPMX20_00921 0.10 -1.4 969,357 - MPMX20_00921 0.10 -0.1 969,357 - MPMX20_00921 0.10 -1.9 969,362 - MPMX20_00921 0.11 +1.5 969,376 - MPMX20_00921 0.12 +1.0 969,380 + MPMX20_00921 0.12 -1.4 969,380 + MPMX20_00921 0.12 -1.4 969,388 - MPMX20_00921 0.13 +0.9 969,388 - MPMX20_00921 0.13 -0.6 969,388 - MPMX20_00921 0.13 +2.3 969,388 - MPMX20_00921 0.13 -1.2 969,388 - MPMX20_00921 0.13 +0.3 969,407 + MPMX20_00921 0.15 -0.6 969,420 - MPMX20_00921 0.16 -2.4 969,424 + MPMX20_00921 0.17 +1.3 969,440 + MPMX20_00921 0.18 +2.7 969,526 + MPMX20_00921 0.26 -2.0 969,534 - MPMX20_00921 0.27 +1.1 969,554 + MPMX20_00921 0.29 -3.2 969,562 - MPMX20_00921 0.30 -2.1 969,565 + MPMX20_00921 0.30 -0.2 969,582 + MPMX20_00921 0.31 +0.8 969,585 - MPMX20_00921 0.32 -2.4 969,587 + MPMX20_00921 0.32 +0.3 969,609 - MPMX20_00921 0.34 -1.3 969,636 + MPMX20_00921 0.37 -0.0 969,703 + MPMX20_00921 0.43 -3.8 969,719 + MPMX20_00921 0.44 +1.1 969,731 + MPMX20_00921 0.46 -1.7 969,734 - MPMX20_00921 0.46 +0.7 969,750 - MPMX20_00921 0.47 -1.3 969,750 - MPMX20_00921 0.47 -2.2 969,753 + MPMX20_00921 0.48 +0.0 969,761 - MPMX20_00921 0.48 -1.6 969,889 - MPMX20_00921 0.60 -0.5 969,931 + MPMX20_00921 0.64 +0.5 969,939 - MPMX20_00921 0.65 +2.2
Or see this region's nucleotide sequence