Experiment: RCH2_defined_glucose plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02004 and MPMX20_02005 are separated by 617 nucleotides MPMX20_02005 and MPMX20_02006 overlap by 4 nucleotides MPMX20_02006 and MPMX20_02007 are separated by 2 nucleotides
MPMX20_02004: MPMX20_02004 - Dipeptide and tripeptide permease A, at 2,092,966 to 2,094,474
_02004
MPMX20_02005: MPMX20_02005 - Endonuclease III, at 2,095,092 to 2,095,727
_02005
MPMX20_02006: MPMX20_02006 - Ion-translocating oxidoreductase complex subunit E, at 2,095,724 to 2,096,410
_02006
MPMX20_02007: MPMX20_02007 - Ion-translocating oxidoreductase complex subunit G, at 2,096,413 to 2,097,033
_02007
Position (kb)
2095
2096 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 2094.119 kb on + strand, within MPMX20_02004 at 2094.124 kb on + strand, within MPMX20_02004 at 2094.127 kb on - strand, within MPMX20_02004 at 2094.162 kb on + strand, within MPMX20_02004 at 2094.170 kb on - strand, within MPMX20_02004 at 2094.170 kb on - strand, within MPMX20_02004 at 2094.180 kb on + strand, within MPMX20_02004 at 2094.215 kb on - strand, within MPMX20_02004 at 2094.249 kb on + strand, within MPMX20_02004 at 2094.257 kb on + strand, within MPMX20_02004 at 2094.262 kb on + strand, within MPMX20_02004 at 2094.265 kb on - strand, within MPMX20_02004 at 2094.283 kb on + strand, within MPMX20_02004 at 2094.288 kb on + strand, within MPMX20_02004 at 2094.296 kb on - strand, within MPMX20_02004 at 2094.316 kb on - strand, within MPMX20_02004 at 2094.415 kb on - strand at 2094.433 kb on - strand at 2094.434 kb on - strand at 2094.434 kb on - strand at 2094.434 kb on - strand at 2094.434 kb on - strand at 2094.435 kb on - strand at 2094.440 kb on - strand at 2094.452 kb on + strand at 2094.452 kb on + strand at 2094.460 kb on - strand at 2094.535 kb on - strand at 2094.535 kb on - strand at 2094.536 kb on - strand at 2094.549 kb on - strand at 2094.580 kb on - strand at 2094.581 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.625 kb on + strand at 2094.663 kb on + strand at 2094.805 kb on + strand at 2094.805 kb on + strand at 2094.828 kb on + strand at 2094.836 kb on - strand at 2094.837 kb on - strand at 2094.837 kb on - strand at 2094.850 kb on + strand at 2094.903 kb on - strand at 2095.103 kb on - strand at 2095.119 kb on + strand at 2095.264 kb on + strand, within MPMX20_02005 at 2095.264 kb on + strand, within MPMX20_02005 at 2095.264 kb on + strand, within MPMX20_02005 at 2095.287 kb on - strand, within MPMX20_02005 at 2095.343 kb on - strand, within MPMX20_02005 at 2095.345 kb on + strand, within MPMX20_02005 at 2095.345 kb on + strand, within MPMX20_02005 at 2095.353 kb on - strand, within MPMX20_02005 at 2095.355 kb on - strand, within MPMX20_02005 at 2095.383 kb on + strand, within MPMX20_02005 at 2095.398 kb on - strand, within MPMX20_02005 at 2095.471 kb on + strand, within MPMX20_02005 at 2095.549 kb on - strand, within MPMX20_02005 at 2095.561 kb on + strand, within MPMX20_02005 at 2095.569 kb on - strand, within MPMX20_02005 at 2095.569 kb on - strand, within MPMX20_02005 at 2095.653 kb on + strand, within MPMX20_02005 at 2095.703 kb on - strand at 2095.703 kb on - strand at 2095.758 kb on - strand at 2095.768 kb on - strand at 2095.826 kb on - strand, within MPMX20_02006 at 2095.911 kb on + strand, within MPMX20_02006 at 2095.911 kb on + strand, within MPMX20_02006 at 2096.021 kb on + strand, within MPMX20_02006 at 2096.077 kb on + strand, within MPMX20_02006 at 2096.077 kb on + strand, within MPMX20_02006 at 2096.080 kb on + strand, within MPMX20_02006 at 2096.153 kb on - strand, within MPMX20_02006 at 2096.231 kb on + strand, within MPMX20_02006 at 2096.236 kb on + strand, within MPMX20_02006 at 2096.236 kb on + strand, within MPMX20_02006 at 2096.262 kb on + strand, within MPMX20_02006 at 2096.293 kb on - strand, within MPMX20_02006 at 2096.293 kb on - strand, within MPMX20_02006 at 2096.425 kb on + strand at 2096.505 kb on + strand, within MPMX20_02007 at 2096.513 kb on - strand, within MPMX20_02007 at 2096.519 kb on + strand, within MPMX20_02007 at 2096.537 kb on - strand, within MPMX20_02007 at 2096.617 kb on + strand, within MPMX20_02007 at 2096.664 kb on - strand, within MPMX20_02007 at 2096.683 kb on - strand, within MPMX20_02007 at 2096.698 kb on - strand, within MPMX20_02007 at 2096.727 kb on + strand, within MPMX20_02007
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030 remove 2,094,119 + MPMX20_02004 0.76 +1.0 2,094,124 + MPMX20_02004 0.77 -0.2 2,094,127 - MPMX20_02004 0.77 -0.3 2,094,162 + MPMX20_02004 0.79 -0.9 2,094,170 - MPMX20_02004 0.80 -0.2 2,094,170 - MPMX20_02004 0.80 -0.1 2,094,180 + MPMX20_02004 0.80 +2.4 2,094,215 - MPMX20_02004 0.83 +0.5 2,094,249 + MPMX20_02004 0.85 +0.6 2,094,257 + MPMX20_02004 0.86 -0.0 2,094,262 + MPMX20_02004 0.86 -1.2 2,094,265 - MPMX20_02004 0.86 -1.6 2,094,283 + MPMX20_02004 0.87 -1.5 2,094,288 + MPMX20_02004 0.88 -0.6 2,094,296 - MPMX20_02004 0.88 -0.1 2,094,316 - MPMX20_02004 0.89 +0.2 2,094,415 - -1.2 2,094,433 - -1.0 2,094,434 - -1.3 2,094,434 - +0.2 2,094,434 - +0.7 2,094,434 - -3.2 2,094,435 - -2.0 2,094,440 - -0.2 2,094,452 + -1.0 2,094,452 + -1.3 2,094,460 - +5.3 2,094,535 - -1.7 2,094,535 - -0.7 2,094,536 - -2.5 2,094,549 - +0.2 2,094,580 - -0.7 2,094,581 + -1.6 2,094,586 + +1.6 2,094,586 + -0.0 2,094,586 + -2.5 2,094,586 + +0.1 2,094,586 + -0.4 2,094,586 + -1.1 2,094,586 + -0.8 2,094,586 + -0.5 2,094,586 + -0.6 2,094,594 - +1.5 2,094,594 - +0.6 2,094,594 - +0.7 2,094,594 - -0.3 2,094,594 - -0.6 2,094,594 - -1.6 2,094,594 - +1.7 2,094,594 - +0.6 2,094,594 - +1.4 2,094,594 - +5.0 2,094,594 - -2.5 2,094,594 - -1.7 2,094,594 - -1.1 2,094,594 - -0.3 2,094,594 - -0.9 2,094,594 - +0.4 2,094,594 - +0.5 2,094,594 - -0.4 2,094,594 - +1.0 2,094,625 + +0.7 2,094,663 + -0.5 2,094,805 + -2.7 2,094,805 + -1.8 2,094,828 + -0.3 2,094,836 - +0.2 2,094,837 - -0.2 2,094,837 - +0.4 2,094,850 + +0.3 2,094,903 - +2.0 2,095,103 - -1.1 2,095,119 + -2.2 2,095,264 + MPMX20_02005 0.27 +0.4 2,095,264 + MPMX20_02005 0.27 -1.3 2,095,264 + MPMX20_02005 0.27 +0.2 2,095,287 - MPMX20_02005 0.31 -2.7 2,095,343 - MPMX20_02005 0.39 +1.5 2,095,345 + MPMX20_02005 0.40 -1.3 2,095,345 + MPMX20_02005 0.40 -0.4 2,095,353 - MPMX20_02005 0.41 +0.6 2,095,355 - MPMX20_02005 0.41 -0.1 2,095,383 + MPMX20_02005 0.46 -1.3 2,095,398 - MPMX20_02005 0.48 +6.9 2,095,471 + MPMX20_02005 0.60 +0.5 2,095,549 - MPMX20_02005 0.72 +1.0 2,095,561 + MPMX20_02005 0.74 +0.1 2,095,569 - MPMX20_02005 0.75 -2.3 2,095,569 - MPMX20_02005 0.75 +0.8 2,095,653 + MPMX20_02005 0.88 +1.1 2,095,703 - +2.1 2,095,703 - +2.6 2,095,758 - +1.2 2,095,768 - -1.6 2,095,826 - MPMX20_02006 0.15 +0.5 2,095,911 + MPMX20_02006 0.27 +1.2 2,095,911 + MPMX20_02006 0.27 -2.3 2,096,021 + MPMX20_02006 0.43 -0.2 2,096,077 + MPMX20_02006 0.51 -0.2 2,096,077 + MPMX20_02006 0.51 +1.0 2,096,080 + MPMX20_02006 0.52 -1.5 2,096,153 - MPMX20_02006 0.62 +1.4 2,096,231 + MPMX20_02006 0.74 +1.0 2,096,236 + MPMX20_02006 0.75 +0.3 2,096,236 + MPMX20_02006 0.75 +0.2 2,096,262 + MPMX20_02006 0.78 +1.4 2,096,293 - MPMX20_02006 0.83 +1.4 2,096,293 - MPMX20_02006 0.83 -1.0 2,096,425 + -2.3 2,096,505 + MPMX20_02007 0.15 -0.8 2,096,513 - MPMX20_02007 0.16 +0.7 2,096,519 + MPMX20_02007 0.17 -1.7 2,096,537 - MPMX20_02007 0.20 +3.0 2,096,617 + MPMX20_02007 0.33 -0.2 2,096,664 - MPMX20_02007 0.40 -0.3 2,096,683 - MPMX20_02007 0.43 +2.4 2,096,698 - MPMX20_02007 0.46 -1.3 2,096,727 + MPMX20_02007 0.51 +0.7
Or see this region's nucleotide sequence