Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00541

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00540 and MPMX20_00541 are separated by 150 nucleotidesMPMX20_00541 and MPMX20_00542 are separated by 66 nucleotidesMPMX20_00542 and MPMX20_00543 are separated by 74 nucleotides MPMX20_00540: MPMX20_00540 - Magnesium-transporting ATPase, P-type 1, at 560,441 to 563,149 _00540 MPMX20_00541: MPMX20_00541 - hypothetical protein, at 563,300 to 565,684 _00541 MPMX20_00542: MPMX20_00542 - 2-iminobutanoate/2-iminopropanoate deaminase, at 565,751 to 566,137 _00542 MPMX20_00543: MPMX20_00543 - Aspartate carbamoyltransferase regulatory chain, at 566,212 to 566,673 _00543 Position (kb) 563 564 565 566Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 562.315 kb on - strand, within MPMX20_00540at 562.344 kb on - strand, within MPMX20_00540at 562.358 kb on - strand, within MPMX20_00540at 562.389 kb on + strand, within MPMX20_00540at 562.489 kb on - strand, within MPMX20_00540at 562.631 kb on + strand, within MPMX20_00540at 562.640 kb on - strand, within MPMX20_00540at 562.728 kb on + strand, within MPMX20_00540at 562.752 kb on + strand, within MPMX20_00540at 562.760 kb on - strand, within MPMX20_00540at 562.760 kb on - strand, within MPMX20_00540at 562.765 kb on - strand, within MPMX20_00540at 562.772 kb on - strand, within MPMX20_00540at 562.793 kb on + strand, within MPMX20_00540at 562.838 kb on + strand, within MPMX20_00540at 562.863 kb on - strand, within MPMX20_00540at 562.863 kb on - strand, within MPMX20_00540at 562.870 kb on + strand, within MPMX20_00540at 562.945 kb on - strandat 562.950 kb on - strandat 562.950 kb on - strandat 562.995 kb on + strandat 562.995 kb on + strandat 563.003 kb on - strandat 563.003 kb on - strandat 563.055 kb on + strandat 563.110 kb on + strandat 563.110 kb on + strandat 563.110 kb on + strandat 563.111 kb on + strandat 563.111 kb on + strandat 563.118 kb on - strandat 563.142 kb on - strandat 563.212 kb on - strandat 563.356 kb on - strandat 563.383 kb on + strandat 563.383 kb on + strandat 563.383 kb on + strandat 563.391 kb on - strandat 563.398 kb on + strandat 563.421 kb on + strandat 563.424 kb on + strandat 563.432 kb on - strandat 563.450 kb on - strandat 563.613 kb on + strand, within MPMX20_00541at 563.704 kb on + strand, within MPMX20_00541at 563.737 kb on - strand, within MPMX20_00541at 563.824 kb on + strand, within MPMX20_00541at 563.856 kb on - strand, within MPMX20_00541at 563.928 kb on + strand, within MPMX20_00541at 563.928 kb on + strand, within MPMX20_00541at 563.936 kb on - strand, within MPMX20_00541at 563.936 kb on - strand, within MPMX20_00541at 563.962 kb on + strand, within MPMX20_00541at 563.962 kb on + strand, within MPMX20_00541at 563.962 kb on + strand, within MPMX20_00541at 563.970 kb on - strand, within MPMX20_00541at 563.970 kb on - strand, within MPMX20_00541at 563.998 kb on - strand, within MPMX20_00541at 564.000 kb on + strand, within MPMX20_00541at 564.005 kb on + strand, within MPMX20_00541at 564.008 kb on - strand, within MPMX20_00541at 564.070 kb on + strand, within MPMX20_00541at 564.083 kb on - strand, within MPMX20_00541at 564.093 kb on + strand, within MPMX20_00541at 564.093 kb on + strand, within MPMX20_00541at 564.101 kb on - strand, within MPMX20_00541at 564.101 kb on - strand, within MPMX20_00541at 564.118 kb on + strand, within MPMX20_00541at 564.118 kb on + strand, within MPMX20_00541at 564.126 kb on - strand, within MPMX20_00541at 564.286 kb on + strand, within MPMX20_00541at 564.323 kb on - strand, within MPMX20_00541at 564.331 kb on - strand, within MPMX20_00541at 564.331 kb on - strand, within MPMX20_00541at 564.370 kb on + strand, within MPMX20_00541at 564.387 kb on + strand, within MPMX20_00541at 564.436 kb on + strand, within MPMX20_00541at 564.436 kb on + strand, within MPMX20_00541at 564.443 kb on - strand, within MPMX20_00541at 564.526 kb on + strand, within MPMX20_00541at 564.534 kb on - strand, within MPMX20_00541at 564.581 kb on + strand, within MPMX20_00541at 564.613 kb on - strand, within MPMX20_00541at 564.618 kb on - strand, within MPMX20_00541at 564.660 kb on + strand, within MPMX20_00541at 564.660 kb on + strand, within MPMX20_00541at 564.668 kb on - strand, within MPMX20_00541at 564.731 kb on + strand, within MPMX20_00541at 564.739 kb on - strand, within MPMX20_00541at 564.822 kb on + strand, within MPMX20_00541at 564.822 kb on + strand, within MPMX20_00541at 564.830 kb on - strand, within MPMX20_00541at 564.830 kb on - strand, within MPMX20_00541at 564.845 kb on - strand, within MPMX20_00541at 564.895 kb on + strand, within MPMX20_00541at 564.927 kb on + strand, within MPMX20_00541at 564.935 kb on - strand, within MPMX20_00541at 564.936 kb on + strand, within MPMX20_00541at 565.020 kb on + strand, within MPMX20_00541at 565.028 kb on - strand, within MPMX20_00541at 565.039 kb on + strand, within MPMX20_00541at 565.039 kb on + strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.047 kb on - strand, within MPMX20_00541at 565.076 kb on + strand, within MPMX20_00541at 565.156 kb on + strand, within MPMX20_00541at 565.164 kb on - strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.246 kb on + strand, within MPMX20_00541at 565.246 kb on - strand, within MPMX20_00541at 565.344 kb on + strand, within MPMX20_00541at 565.350 kb on - strand, within MPMX20_00541at 565.515 kb on + strandat 565.557 kb on + strandat 565.578 kb on + strandat 565.578 kb on + strandat 565.592 kb on + strandat 565.600 kb on - strandat 565.600 kb on - strandat 565.723 kb on - strandat 565.799 kb on - strand, within MPMX20_00542at 565.799 kb on - strand, within MPMX20_00542at 565.818 kb on - strand, within MPMX20_00542at 565.828 kb on - strand, within MPMX20_00542at 565.830 kb on + strand, within MPMX20_00542at 565.952 kb on + strand, within MPMX20_00542at 565.952 kb on + strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.961 kb on + strand, within MPMX20_00542at 566.030 kb on - strand, within MPMX20_00542at 566.066 kb on + strand, within MPMX20_00542at 566.069 kb on - strand, within MPMX20_00542at 566.071 kb on + strand, within MPMX20_00542at 566.074 kb on - strand, within MPMX20_00542at 566.074 kb on - strand, within MPMX20_00542at 566.086 kb on + strand, within MPMX20_00542at 566.094 kb on - strand, within MPMX20_00542at 566.132 kb on + strandat 566.132 kb on + strandat 566.159 kb on + strandat 566.185 kb on - strandat 566.185 kb on - strandat 566.231 kb on - strandat 566.319 kb on + strand, within MPMX20_00543at 566.328 kb on - strand, within MPMX20_00543at 566.345 kb on + strand, within MPMX20_00543at 566.358 kb on - strand, within MPMX20_00543at 566.397 kb on - strand, within MPMX20_00543at 566.397 kb on - strand, within MPMX20_00543at 566.402 kb on + strand, within MPMX20_00543at 566.411 kb on - strand, within MPMX20_00543at 566.444 kb on + strand, within MPMX20_00543at 566.510 kb on - strand, within MPMX20_00543at 566.532 kb on + strand, within MPMX20_00543at 566.546 kb on + strand, within MPMX20_00543at 566.546 kb on - strand, within MPMX20_00543at 566.556 kb on + strand, within MPMX20_00543at 566.556 kb on + strand, within MPMX20_00543at 566.561 kb on + strand, within MPMX20_00543at 566.589 kb on + strand, within MPMX20_00543at 566.594 kb on + strand, within MPMX20_00543at 566.597 kb on - strand, within MPMX20_00543at 566.597 kb on - strand, within MPMX20_00543at 566.604 kb on + strand, within MPMX20_00543at 566.612 kb on - strand, within MPMX20_00543at 566.665 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030
remove
562,315 - MPMX20_00540 0.69 -0.2
562,344 - MPMX20_00540 0.70 -1.3
562,358 - MPMX20_00540 0.71 +0.7
562,389 + MPMX20_00540 0.72 -0.8
562,489 - MPMX20_00540 0.76 -2.5
562,631 + MPMX20_00540 0.81 -0.9
562,640 - MPMX20_00540 0.81 +2.8
562,728 + MPMX20_00540 0.84 -1.9
562,752 + MPMX20_00540 0.85 -0.4
562,760 - MPMX20_00540 0.86 -1.5
562,760 - MPMX20_00540 0.86 -0.6
562,765 - MPMX20_00540 0.86 -2.6
562,772 - MPMX20_00540 0.86 -2.5
562,793 + MPMX20_00540 0.87 -0.0
562,838 + MPMX20_00540 0.88 -2.5
562,863 - MPMX20_00540 0.89 -0.9
562,863 - MPMX20_00540 0.89 -1.4
562,870 + MPMX20_00540 0.90 -0.4
562,945 - +0.2
562,950 - -3.8
562,950 - +0.7
562,995 + -3.3
562,995 + -0.3
563,003 - -1.5
563,003 - -1.8
563,055 + +0.5
563,110 + -2.8
563,110 + -2.0
563,110 + -2.9
563,111 + +3.0
563,111 + -2.4
563,118 - -2.6
563,142 - -2.0
563,212 - +0.2
563,356 - +0.2
563,383 + -2.0
563,383 + +1.7
563,383 + -2.1
563,391 - -2.3
563,398 + -1.4
563,421 + -0.1
563,424 + -0.4
563,432 - +0.6
563,450 - +3.0
563,613 + MPMX20_00541 0.13 +4.0
563,704 + MPMX20_00541 0.17 +2.0
563,737 - MPMX20_00541 0.18 -0.9
563,824 + MPMX20_00541 0.22 +0.2
563,856 - MPMX20_00541 0.23 -2.5
563,928 + MPMX20_00541 0.26 +0.2
563,928 + MPMX20_00541 0.26 -0.2
563,936 - MPMX20_00541 0.27 -1.5
563,936 - MPMX20_00541 0.27 +1.6
563,962 + MPMX20_00541 0.28 +2.6
563,962 + MPMX20_00541 0.28 +0.7
563,962 + MPMX20_00541 0.28 +1.4
563,970 - MPMX20_00541 0.28 -0.4
563,970 - MPMX20_00541 0.28 +0.8
563,998 - MPMX20_00541 0.29 -1.2
564,000 + MPMX20_00541 0.29 +1.4
564,005 + MPMX20_00541 0.30 -1.3
564,008 - MPMX20_00541 0.30 -1.0
564,070 + MPMX20_00541 0.32 -0.2
564,083 - MPMX20_00541 0.33 -0.2
564,093 + MPMX20_00541 0.33 +0.0
564,093 + MPMX20_00541 0.33 +3.0
564,101 - MPMX20_00541 0.34 -0.7
564,101 - MPMX20_00541 0.34 +1.0
564,118 + MPMX20_00541 0.34 -0.2
564,118 + MPMX20_00541 0.34 +1.2
564,126 - MPMX20_00541 0.35 -1.7
564,286 + MPMX20_00541 0.41 -0.2
564,323 - MPMX20_00541 0.43 -1.0
564,331 - MPMX20_00541 0.43 +1.3
564,331 - MPMX20_00541 0.43 +1.2
564,370 + MPMX20_00541 0.45 +2.0
564,387 + MPMX20_00541 0.46 -0.7
564,436 + MPMX20_00541 0.48 +0.4
564,436 + MPMX20_00541 0.48 -0.6
564,443 - MPMX20_00541 0.48 -0.2
564,526 + MPMX20_00541 0.51 -0.2
564,534 - MPMX20_00541 0.52 +0.4
564,581 + MPMX20_00541 0.54 -0.1
564,613 - MPMX20_00541 0.55 +1.2
564,618 - MPMX20_00541 0.55 +1.5
564,660 + MPMX20_00541 0.57 -1.6
564,660 + MPMX20_00541 0.57 -2.2
564,668 - MPMX20_00541 0.57 -0.4
564,731 + MPMX20_00541 0.60 +0.5
564,739 - MPMX20_00541 0.60 +1.0
564,822 + MPMX20_00541 0.64 +1.6
564,822 + MPMX20_00541 0.64 +0.8
564,830 - MPMX20_00541 0.64 -1.7
564,830 - MPMX20_00541 0.64 -0.6
564,845 - MPMX20_00541 0.65 -1.3
564,895 + MPMX20_00541 0.67 +0.3
564,927 + MPMX20_00541 0.68 +1.4
564,935 - MPMX20_00541 0.69 -1.6
564,936 + MPMX20_00541 0.69 -0.1
565,020 + MPMX20_00541 0.72 -0.7
565,028 - MPMX20_00541 0.72 +2.4
565,039 + MPMX20_00541 0.73 -0.1
565,039 + MPMX20_00541 0.73 +0.6
565,047 - MPMX20_00541 0.73 -1.5
565,047 - MPMX20_00541 0.73 -0.4
565,047 - MPMX20_00541 0.73 +0.8
565,047 - MPMX20_00541 0.73 -0.7
565,047 - MPMX20_00541 0.73 +2.8
565,076 + MPMX20_00541 0.74 +0.7
565,156 + MPMX20_00541 0.78 +0.7
565,164 - MPMX20_00541 0.78 +0.6
565,228 + MPMX20_00541 0.81 -1.0
565,228 + MPMX20_00541 0.81 +1.1
565,228 + MPMX20_00541 0.81 +0.5
565,228 + MPMX20_00541 0.81 -2.4
565,228 + MPMX20_00541 0.81 -1.3
565,228 + MPMX20_00541 0.81 -0.3
565,228 + MPMX20_00541 0.81 +1.6
565,228 + MPMX20_00541 0.81 -0.7
565,228 + MPMX20_00541 0.81 +5.3
565,228 + MPMX20_00541 0.81 +0.2
565,228 + MPMX20_00541 0.81 -0.4
565,236 - MPMX20_00541 0.81 -2.8
565,236 - MPMX20_00541 0.81 +0.4
565,236 - MPMX20_00541 0.81 -1.0
565,246 + MPMX20_00541 0.82 -3.2
565,246 - MPMX20_00541 0.82 +3.0
565,344 + MPMX20_00541 0.86 -0.8
565,350 - MPMX20_00541 0.86 -0.7
565,515 + -0.3
565,557 + +1.1
565,578 + -0.6
565,578 + -0.8
565,592 + +0.8
565,600 - +0.3
565,600 - -0.5
565,723 - +0.3
565,799 - MPMX20_00542 0.12 -0.5
565,799 - MPMX20_00542 0.12 -1.5
565,818 - MPMX20_00542 0.17 -2.4
565,828 - MPMX20_00542 0.20 +1.7
565,830 + MPMX20_00542 0.20 -2.0
565,952 + MPMX20_00542 0.52 -0.7
565,952 + MPMX20_00542 0.52 -1.1
565,960 - MPMX20_00542 0.54 -1.4
565,960 - MPMX20_00542 0.54 +0.0
565,960 - MPMX20_00542 0.54 +0.4
565,961 + MPMX20_00542 0.54 +1.7
566,030 - MPMX20_00542 0.72 -2.3
566,066 + MPMX20_00542 0.81 -2.1
566,069 - MPMX20_00542 0.82 +0.7
566,071 + MPMX20_00542 0.83 -2.1
566,074 - MPMX20_00542 0.83 -0.3
566,074 - MPMX20_00542 0.83 -0.8
566,086 + MPMX20_00542 0.87 -1.6
566,094 - MPMX20_00542 0.89 +3.0
566,132 + +1.0
566,132 + +0.2
566,159 + +1.0
566,185 - -1.6
566,185 - -2.3
566,231 - -1.7
566,319 + MPMX20_00543 0.23 -0.8
566,328 - MPMX20_00543 0.25 -0.4
566,345 + MPMX20_00543 0.29 +1.1
566,358 - MPMX20_00543 0.32 -3.3
566,397 - MPMX20_00543 0.40 +1.3
566,397 - MPMX20_00543 0.40 +1.4
566,402 + MPMX20_00543 0.41 -0.3
566,411 - MPMX20_00543 0.43 +4.0
566,444 + MPMX20_00543 0.50 -1.6
566,510 - MPMX20_00543 0.65 -0.4
566,532 + MPMX20_00543 0.69 -0.8
566,546 + MPMX20_00543 0.72 -1.9
566,546 - MPMX20_00543 0.72 +0.8
566,556 + MPMX20_00543 0.74 -2.0
566,556 + MPMX20_00543 0.74 -1.1
566,561 + MPMX20_00543 0.76 -2.1
566,589 + MPMX20_00543 0.82 +1.0
566,594 + MPMX20_00543 0.83 -1.1
566,597 - MPMX20_00543 0.83 +1.6
566,597 - MPMX20_00543 0.83 -0.8
566,604 + MPMX20_00543 0.85 +1.0
566,612 - MPMX20_00543 0.87 +0.1
566,665 - +1.2

Or see this region's nucleotide sequence