Experiment: LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01484 and MPMX20_01485 overlap by 4 nucleotides MPMX20_01485 and MPMX20_01486 are separated by 117 nucleotides MPMX20_01486 and MPMX20_01487 are separated by 12 nucleotides
MPMX20_01484: MPMX20_01484 - HTH-type transcriptional regulator RcdA, at 1,555,047 to 1,555,598
_01484
MPMX20_01485: MPMX20_01485 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,555,595 to 1,556,371
_01485
MPMX20_01486: MPMX20_01486 - Arsenate reductase, at 1,556,489 to 1,556,920
_01486
MPMX20_01487: MPMX20_01487 - Arsenical pump membrane protein, at 1,556,933 to 1,558,222
_01487
Position (kb)
1556
1557 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1555.551 kb on - strand at 1555.698 kb on - strand, within MPMX20_01485 at 1555.755 kb on + strand, within MPMX20_01485 at 1555.787 kb on + strand, within MPMX20_01485 at 1555.798 kb on + strand, within MPMX20_01485 at 1555.806 kb on - strand, within MPMX20_01485 at 1555.816 kb on - strand, within MPMX20_01485 at 1555.816 kb on - strand, within MPMX20_01485 at 1555.862 kb on - strand, within MPMX20_01485 at 1555.892 kb on + strand, within MPMX20_01485 at 1555.900 kb on - strand, within MPMX20_01485 at 1555.900 kb on - strand, within MPMX20_01485 at 1555.900 kb on - strand, within MPMX20_01485 at 1556.053 kb on + strand, within MPMX20_01485 at 1556.088 kb on - strand, within MPMX20_01485 at 1556.165 kb on - strand, within MPMX20_01485 at 1556.247 kb on + strand, within MPMX20_01485 at 1556.247 kb on + strand, within MPMX20_01485 at 1556.247 kb on + strand, within MPMX20_01485 at 1556.250 kb on - strand, within MPMX20_01485 at 1556.253 kb on + strand, within MPMX20_01485 at 1556.255 kb on - strand, within MPMX20_01485 at 1556.266 kb on + strand, within MPMX20_01485 at 1556.271 kb on + strand, within MPMX20_01485 at 1556.274 kb on - strand, within MPMX20_01485 at 1556.274 kb on - strand, within MPMX20_01485 at 1556.326 kb on - strand at 1556.385 kb on + strand at 1556.385 kb on + strand at 1556.388 kb on - strand at 1556.388 kb on - strand at 1556.388 kb on - strand at 1556.388 kb on - strand at 1556.388 kb on - strand at 1556.388 kb on - strand at 1556.473 kb on - strand at 1556.542 kb on - strand, within MPMX20_01486 at 1556.598 kb on - strand, within MPMX20_01486 at 1556.607 kb on - strand, within MPMX20_01486 at 1556.608 kb on + strand, within MPMX20_01486 at 1556.608 kb on + strand, within MPMX20_01486 at 1556.616 kb on - strand, within MPMX20_01486 at 1556.673 kb on - strand, within MPMX20_01486 at 1556.781 kb on + strand, within MPMX20_01486 at 1556.791 kb on + strand, within MPMX20_01486 at 1556.841 kb on + strand, within MPMX20_01486 at 1556.860 kb on + strand, within MPMX20_01486 at 1556.915 kb on + strand at 1556.923 kb on - strand at 1556.936 kb on - strand at 1556.936 kb on - strand at 1556.946 kb on - strand at 1556.946 kb on - strand at 1556.994 kb on + strand at 1557.001 kb on - strand at 1557.071 kb on - strand, within MPMX20_01487 at 1557.094 kb on - strand, within MPMX20_01487 at 1557.177 kb on + strand, within MPMX20_01487 at 1557.202 kb on - strand, within MPMX20_01487 at 1557.255 kb on - strand, within MPMX20_01487 at 1557.255 kb on - strand, within MPMX20_01487 at 1557.260 kb on - strand, within MPMX20_01487 at 1557.277 kb on - strand, within MPMX20_01487 at 1557.304 kb on - strand, within MPMX20_01487 at 1557.322 kb on + strand, within MPMX20_01487 at 1557.335 kb on - strand, within MPMX20_01487 at 1557.335 kb on - strand, within MPMX20_01487 at 1557.335 kb on - strand, within MPMX20_01487 at 1557.337 kb on + strand, within MPMX20_01487 at 1557.346 kb on + strand, within MPMX20_01487 at 1557.346 kb on - strand, within MPMX20_01487 at 1557.471 kb on - strand, within MPMX20_01487 at 1557.481 kb on + strand, within MPMX20_01487 at 1557.554 kb on - strand, within MPMX20_01487 at 1557.600 kb on - strand, within MPMX20_01487 at 1557.683 kb on + strand, within MPMX20_01487 at 1557.703 kb on + strand, within MPMX20_01487 at 1557.712 kb on - strand, within MPMX20_01487 at 1557.748 kb on + strand, within MPMX20_01487 at 1557.748 kb on + strand, within MPMX20_01487 at 1557.777 kb on - strand, within MPMX20_01487
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030 remove 1,555,551 - -0.4 1,555,698 - MPMX20_01485 0.13 -0.8 1,555,755 + MPMX20_01485 0.21 +1.7 1,555,787 + MPMX20_01485 0.25 +0.1 1,555,798 + MPMX20_01485 0.26 +1.7 1,555,806 - MPMX20_01485 0.27 +2.5 1,555,816 - MPMX20_01485 0.28 -0.1 1,555,816 - MPMX20_01485 0.28 -0.2 1,555,862 - MPMX20_01485 0.34 -1.1 1,555,892 + MPMX20_01485 0.38 +0.1 1,555,900 - MPMX20_01485 0.39 +1.1 1,555,900 - MPMX20_01485 0.39 +3.7 1,555,900 - MPMX20_01485 0.39 -1.1 1,556,053 + MPMX20_01485 0.59 -1.2 1,556,088 - MPMX20_01485 0.63 +0.6 1,556,165 - MPMX20_01485 0.73 -1.5 1,556,247 + MPMX20_01485 0.84 +3.2 1,556,247 + MPMX20_01485 0.84 +1.7 1,556,247 + MPMX20_01485 0.84 -0.4 1,556,250 - MPMX20_01485 0.84 -2.7 1,556,253 + MPMX20_01485 0.85 -0.9 1,556,255 - MPMX20_01485 0.85 +0.2 1,556,266 + MPMX20_01485 0.86 +1.7 1,556,271 + MPMX20_01485 0.87 +1.2 1,556,274 - MPMX20_01485 0.87 -0.6 1,556,274 - MPMX20_01485 0.87 +2.5 1,556,326 - +0.2 1,556,385 + -0.1 1,556,385 + +2.8 1,556,388 - -1.3 1,556,388 - -0.5 1,556,388 - -0.4 1,556,388 - -3.7 1,556,388 - +1.7 1,556,388 - -2.6 1,556,473 - +1.6 1,556,542 - MPMX20_01486 0.12 +1.9 1,556,598 - MPMX20_01486 0.25 -2.8 1,556,607 - MPMX20_01486 0.27 -1.3 1,556,608 + MPMX20_01486 0.28 -0.3 1,556,608 + MPMX20_01486 0.28 -1.9 1,556,616 - MPMX20_01486 0.29 -3.5 1,556,673 - MPMX20_01486 0.43 +1.7 1,556,781 + MPMX20_01486 0.68 -1.0 1,556,791 + MPMX20_01486 0.70 -2.5 1,556,841 + MPMX20_01486 0.81 -2.8 1,556,860 + MPMX20_01486 0.86 +0.7 1,556,915 + +2.2 1,556,923 - +2.1 1,556,936 - +3.6 1,556,936 - -1.2 1,556,946 - -0.5 1,556,946 - -0.7 1,556,994 + -1.7 1,557,001 - +1.1 1,557,071 - MPMX20_01487 0.11 +1.0 1,557,094 - MPMX20_01487 0.12 -2.6 1,557,177 + MPMX20_01487 0.19 -2.8 1,557,202 - MPMX20_01487 0.21 +0.7 1,557,255 - MPMX20_01487 0.25 +2.9 1,557,255 - MPMX20_01487 0.25 -1.9 1,557,260 - MPMX20_01487 0.25 +0.4 1,557,277 - MPMX20_01487 0.27 +0.1 1,557,304 - MPMX20_01487 0.29 +0.2 1,557,322 + MPMX20_01487 0.30 -0.0 1,557,335 - MPMX20_01487 0.31 -0.8 1,557,335 - MPMX20_01487 0.31 -0.3 1,557,335 - MPMX20_01487 0.31 -0.9 1,557,337 + MPMX20_01487 0.31 -0.7 1,557,346 + MPMX20_01487 0.32 -2.2 1,557,346 - MPMX20_01487 0.32 -0.5 1,557,471 - MPMX20_01487 0.42 -1.4 1,557,481 + MPMX20_01487 0.42 +0.8 1,557,554 - MPMX20_01487 0.48 -0.5 1,557,600 - MPMX20_01487 0.52 -0.2 1,557,683 + MPMX20_01487 0.58 +1.2 1,557,703 + MPMX20_01487 0.60 +0.0 1,557,712 - MPMX20_01487 0.60 +3.5 1,557,748 + MPMX20_01487 0.63 -1.3 1,557,748 + MPMX20_01487 0.63 +2.1 1,557,777 - MPMX20_01487 0.65 -0.4
Or see this region's nucleotide sequence