Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01486

Experiment: LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01484 and MPMX20_01485 overlap by 4 nucleotidesMPMX20_01485 and MPMX20_01486 are separated by 117 nucleotidesMPMX20_01486 and MPMX20_01487 are separated by 12 nucleotides MPMX20_01484: MPMX20_01484 - HTH-type transcriptional regulator RcdA, at 1,555,047 to 1,555,598 _01484 MPMX20_01485: MPMX20_01485 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,555,595 to 1,556,371 _01485 MPMX20_01486: MPMX20_01486 - Arsenate reductase, at 1,556,489 to 1,556,920 _01486 MPMX20_01487: MPMX20_01487 - Arsenical pump membrane protein, at 1,556,933 to 1,558,222 _01487 Position (kb) 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1555.551 kb on - strandat 1555.698 kb on - strand, within MPMX20_01485at 1555.755 kb on + strand, within MPMX20_01485at 1555.787 kb on + strand, within MPMX20_01485at 1555.798 kb on + strand, within MPMX20_01485at 1555.806 kb on - strand, within MPMX20_01485at 1555.816 kb on - strand, within MPMX20_01485at 1555.816 kb on - strand, within MPMX20_01485at 1555.862 kb on - strand, within MPMX20_01485at 1555.892 kb on + strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1555.900 kb on - strand, within MPMX20_01485at 1556.053 kb on + strand, within MPMX20_01485at 1556.088 kb on - strand, within MPMX20_01485at 1556.165 kb on - strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.247 kb on + strand, within MPMX20_01485at 1556.250 kb on - strand, within MPMX20_01485at 1556.253 kb on + strand, within MPMX20_01485at 1556.255 kb on - strand, within MPMX20_01485at 1556.266 kb on + strand, within MPMX20_01485at 1556.271 kb on + strand, within MPMX20_01485at 1556.274 kb on - strand, within MPMX20_01485at 1556.274 kb on - strand, within MPMX20_01485at 1556.326 kb on - strandat 1556.385 kb on + strandat 1556.385 kb on + strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.388 kb on - strandat 1556.473 kb on - strandat 1556.542 kb on - strand, within MPMX20_01486at 1556.598 kb on - strand, within MPMX20_01486at 1556.607 kb on - strand, within MPMX20_01486at 1556.608 kb on + strand, within MPMX20_01486at 1556.608 kb on + strand, within MPMX20_01486at 1556.616 kb on - strand, within MPMX20_01486at 1556.673 kb on - strand, within MPMX20_01486at 1556.781 kb on + strand, within MPMX20_01486at 1556.791 kb on + strand, within MPMX20_01486at 1556.841 kb on + strand, within MPMX20_01486at 1556.860 kb on + strand, within MPMX20_01486at 1556.915 kb on + strandat 1556.923 kb on - strandat 1556.936 kb on - strandat 1556.936 kb on - strandat 1556.946 kb on - strandat 1556.946 kb on - strandat 1556.994 kb on + strandat 1557.001 kb on - strandat 1557.071 kb on - strand, within MPMX20_01487at 1557.094 kb on - strand, within MPMX20_01487at 1557.177 kb on + strand, within MPMX20_01487at 1557.202 kb on - strand, within MPMX20_01487at 1557.255 kb on - strand, within MPMX20_01487at 1557.255 kb on - strand, within MPMX20_01487at 1557.260 kb on - strand, within MPMX20_01487at 1557.277 kb on - strand, within MPMX20_01487at 1557.304 kb on - strand, within MPMX20_01487at 1557.322 kb on + strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.337 kb on + strand, within MPMX20_01487at 1557.346 kb on + strand, within MPMX20_01487at 1557.346 kb on - strand, within MPMX20_01487at 1557.471 kb on - strand, within MPMX20_01487at 1557.481 kb on + strand, within MPMX20_01487at 1557.554 kb on - strand, within MPMX20_01487at 1557.600 kb on - strand, within MPMX20_01487at 1557.683 kb on + strand, within MPMX20_01487at 1557.703 kb on + strand, within MPMX20_01487at 1557.712 kb on - strand, within MPMX20_01487at 1557.748 kb on + strand, within MPMX20_01487at 1557.748 kb on + strand, within MPMX20_01487at 1557.777 kb on - strand, within MPMX20_01487

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030
remove
1,555,551 - -0.4
1,555,698 - MPMX20_01485 0.13 -0.8
1,555,755 + MPMX20_01485 0.21 +1.7
1,555,787 + MPMX20_01485 0.25 +0.1
1,555,798 + MPMX20_01485 0.26 +1.7
1,555,806 - MPMX20_01485 0.27 +2.5
1,555,816 - MPMX20_01485 0.28 -0.1
1,555,816 - MPMX20_01485 0.28 -0.2
1,555,862 - MPMX20_01485 0.34 -1.1
1,555,892 + MPMX20_01485 0.38 +0.1
1,555,900 - MPMX20_01485 0.39 +1.1
1,555,900 - MPMX20_01485 0.39 +3.7
1,555,900 - MPMX20_01485 0.39 -1.1
1,556,053 + MPMX20_01485 0.59 -1.2
1,556,088 - MPMX20_01485 0.63 +0.6
1,556,165 - MPMX20_01485 0.73 -1.5
1,556,247 + MPMX20_01485 0.84 +3.2
1,556,247 + MPMX20_01485 0.84 +1.7
1,556,247 + MPMX20_01485 0.84 -0.4
1,556,250 - MPMX20_01485 0.84 -2.7
1,556,253 + MPMX20_01485 0.85 -0.9
1,556,255 - MPMX20_01485 0.85 +0.2
1,556,266 + MPMX20_01485 0.86 +1.7
1,556,271 + MPMX20_01485 0.87 +1.2
1,556,274 - MPMX20_01485 0.87 -0.6
1,556,274 - MPMX20_01485 0.87 +2.5
1,556,326 - +0.2
1,556,385 + -0.1
1,556,385 + +2.8
1,556,388 - -1.3
1,556,388 - -0.5
1,556,388 - -0.4
1,556,388 - -3.7
1,556,388 - +1.7
1,556,388 - -2.6
1,556,473 - +1.6
1,556,542 - MPMX20_01486 0.12 +1.9
1,556,598 - MPMX20_01486 0.25 -2.8
1,556,607 - MPMX20_01486 0.27 -1.3
1,556,608 + MPMX20_01486 0.28 -0.3
1,556,608 + MPMX20_01486 0.28 -1.9
1,556,616 - MPMX20_01486 0.29 -3.5
1,556,673 - MPMX20_01486 0.43 +1.7
1,556,781 + MPMX20_01486 0.68 -1.0
1,556,791 + MPMX20_01486 0.70 -2.5
1,556,841 + MPMX20_01486 0.81 -2.8
1,556,860 + MPMX20_01486 0.86 +0.7
1,556,915 + +2.2
1,556,923 - +2.1
1,556,936 - +3.6
1,556,936 - -1.2
1,556,946 - -0.5
1,556,946 - -0.7
1,556,994 + -1.7
1,557,001 - +1.1
1,557,071 - MPMX20_01487 0.11 +1.0
1,557,094 - MPMX20_01487 0.12 -2.6
1,557,177 + MPMX20_01487 0.19 -2.8
1,557,202 - MPMX20_01487 0.21 +0.7
1,557,255 - MPMX20_01487 0.25 +2.9
1,557,255 - MPMX20_01487 0.25 -1.9
1,557,260 - MPMX20_01487 0.25 +0.4
1,557,277 - MPMX20_01487 0.27 +0.1
1,557,304 - MPMX20_01487 0.29 +0.2
1,557,322 + MPMX20_01487 0.30 -0.0
1,557,335 - MPMX20_01487 0.31 -0.8
1,557,335 - MPMX20_01487 0.31 -0.3
1,557,335 - MPMX20_01487 0.31 -0.9
1,557,337 + MPMX20_01487 0.31 -0.7
1,557,346 + MPMX20_01487 0.32 -2.2
1,557,346 - MPMX20_01487 0.32 -0.5
1,557,471 - MPMX20_01487 0.42 -1.4
1,557,481 + MPMX20_01487 0.42 +0.8
1,557,554 - MPMX20_01487 0.48 -0.5
1,557,600 - MPMX20_01487 0.52 -0.2
1,557,683 + MPMX20_01487 0.58 +1.2
1,557,703 + MPMX20_01487 0.60 +0.0
1,557,712 - MPMX20_01487 0.60 +3.5
1,557,748 + MPMX20_01487 0.63 -1.3
1,557,748 + MPMX20_01487 0.63 +2.1
1,557,777 - MPMX20_01487 0.65 -0.4

Or see this region's nucleotide sequence