Experiment: LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00595 and MPMX20_00596 are separated by 381 nucleotides MPMX20_00596 and MPMX20_00597 are separated by 199 nucleotides MPMX20_00597 and MPMX20_00598 overlap by 15 nucleotides
MPMX20_00595: MPMX20_00595 - hypothetical protein, at 622,699 to 623,037
_00595
MPMX20_00596: MPMX20_00596 - Tryptophan--tRNA ligase 2, at 623,419 to 624,423
_00596
MPMX20_00597: MPMX20_00597 - Glutathione transferase FosA, at 624,623 to 625,048
_00597
MPMX20_00598: MPMX20_00598 - HTH-type transcriptional regulator DegA, at 625,034 to 626,041
_00598
Position (kb) 623
624
625 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 623.387 kb on - strand at 623.387 kb on - strand at 623.387 kb on - strand at 623.387 kb on - strand at 623.387 kb on - strand at 623.389 kb on - strand at 623.393 kb on - strand at 623.393 kb on - strand at 623.393 kb on - strand at 623.393 kb on - strand at 623.393 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.400 kb on - strand at 623.400 kb on - strand at 623.405 kb on - strand at 623.406 kb on - strand at 623.406 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.408 kb on - strand at 623.410 kb on - strand at 623.410 kb on - strand at 623.410 kb on - strand at 623.410 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.415 kb on - strand at 623.420 kb on - strand at 623.420 kb on - strand at 623.420 kb on - strand at 623.420 kb on - strand at 623.420 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.431 kb on - strand at 623.434 kb on - strand at 623.440 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.444 kb on - strand at 623.445 kb on - strand at 623.445 kb on - strand at 623.445 kb on - strand at 623.445 kb on - strand at 623.445 kb on - strand at 623.447 kb on + strand at 623.447 kb on + strand at 623.447 kb on + strand at 623.447 kb on + strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.450 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.455 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.465 kb on - strand at 623.466 kb on - strand at 623.470 kb on - strand at 623.475 kb on - strand at 623.475 kb on - strand at 623.475 kb on - strand at 623.478 kb on - strand at 623.488 kb on - strand at 623.488 kb on - strand at 623.493 kb on - strand at 623.498 kb on - strand at 623.498 kb on - strand at 623.498 kb on - strand at 623.498 kb on - strand at 623.500 kb on + strand at 623.503 kb on - strand at 623.511 kb on - strand at 623.521 kb on - strand, within MPMX20_00596 at 623.525 kb on + strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.533 kb on - strand, within MPMX20_00596 at 623.564 kb on + strand, within MPMX20_00596 at 623.577 kb on - strand, within MPMX20_00596 at 623.612 kb on + strand, within MPMX20_00596 at 623.620 kb on - strand, within MPMX20_00596 at 623.700 kb on - strand, within MPMX20_00596 at 623.700 kb on - strand, within MPMX20_00596 at 623.700 kb on - strand, within MPMX20_00596 at 623.718 kb on + strand, within MPMX20_00596 at 623.718 kb on + strand, within MPMX20_00596 at 623.718 kb on + strand, within MPMX20_00596 at 623.726 kb on - strand, within MPMX20_00596 at 623.726 kb on - strand, within MPMX20_00596 at 623.733 kb on + strand, within MPMX20_00596 at 623.733 kb on + strand, within MPMX20_00596 at 623.733 kb on + strand, within MPMX20_00596 at 623.741 kb on - strand, within MPMX20_00596 at 623.741 kb on - strand, within MPMX20_00596 at 623.741 kb on - strand, within MPMX20_00596 at 623.743 kb on + strand, within MPMX20_00596 at 623.762 kb on + strand, within MPMX20_00596 at 623.765 kb on - strand, within MPMX20_00596 at 623.802 kb on + strand, within MPMX20_00596 at 623.803 kb on + strand, within MPMX20_00596 at 623.810 kb on - strand, within MPMX20_00596 at 623.810 kb on - strand, within MPMX20_00596 at 623.810 kb on - strand, within MPMX20_00596 at 623.810 kb on - strand, within MPMX20_00596 at 623.818 kb on - strand, within MPMX20_00596 at 623.830 kb on - strand, within MPMX20_00596 at 623.882 kb on + strand, within MPMX20_00596 at 623.890 kb on - strand, within MPMX20_00596 at 623.898 kb on + strand, within MPMX20_00596 at 623.898 kb on + strand, within MPMX20_00596 at 623.901 kb on - strand, within MPMX20_00596 at 623.901 kb on - strand, within MPMX20_00596 at 623.906 kb on - strand, within MPMX20_00596 at 623.906 kb on - strand, within MPMX20_00596 at 623.909 kb on + strand, within MPMX20_00596 at 623.949 kb on + strand, within MPMX20_00596 at 623.949 kb on + strand, within MPMX20_00596 at 624.002 kb on + strand, within MPMX20_00596 at 624.029 kb on + strand, within MPMX20_00596 at 624.054 kb on - strand, within MPMX20_00596 at 624.061 kb on + strand, within MPMX20_00596 at 624.070 kb on + strand, within MPMX20_00596 at 624.099 kb on + strand, within MPMX20_00596 at 624.226 kb on + strand, within MPMX20_00596 at 624.234 kb on + strand, within MPMX20_00596 at 624.242 kb on - strand, within MPMX20_00596 at 624.242 kb on - strand, within MPMX20_00596 at 624.242 kb on - strand, within MPMX20_00596 at 624.341 kb on + strand at 624.394 kb on - strand at 624.417 kb on - strand at 624.418 kb on - strand at 624.513 kb on - strand at 624.537 kb on + strand at 624.562 kb on - strand at 624.592 kb on - strand at 624.641 kb on + strand at 624.641 kb on + strand at 624.697 kb on + strand, within MPMX20_00597 at 624.729 kb on - strand, within MPMX20_00597 at 624.813 kb on + strand, within MPMX20_00597 at 624.813 kb on + strand, within MPMX20_00597 at 624.813 kb on + strand, within MPMX20_00597 at 624.870 kb on + strand, within MPMX20_00597 at 624.870 kb on + strand, within MPMX20_00597 at 624.870 kb on + strand, within MPMX20_00597 at 624.894 kb on + strand, within MPMX20_00597 at 624.904 kb on + strand, within MPMX20_00597 at 624.904 kb on + strand, within MPMX20_00597 at 624.912 kb on - strand, within MPMX20_00597 at 624.912 kb on - strand, within MPMX20_00597 at 624.948 kb on + strand, within MPMX20_00597 at 624.948 kb on + strand, within MPMX20_00597 at 624.952 kb on - strand, within MPMX20_00597 at 624.954 kb on + strand, within MPMX20_00597 at 624.962 kb on - strand, within MPMX20_00597 at 624.962 kb on - strand, within MPMX20_00597 at 624.962 kb on - strand, within MPMX20_00597 at 624.962 kb on - strand, within MPMX20_00597 at 624.962 kb on - strand, within MPMX20_00597 at 624.983 kb on - strand, within MPMX20_00597 at 625.004 kb on + strand, within MPMX20_00597 at 625.040 kb on - strand at 625.057 kb on + strand at 625.065 kb on - strand at 625.083 kb on - strand at 625.112 kb on + strand at 625.158 kb on - strand, within MPMX20_00598 at 625.168 kb on - strand, within MPMX20_00598 at 625.172 kb on + strand, within MPMX20_00598 at 625.188 kb on - strand, within MPMX20_00598 at 625.301 kb on + strand, within MPMX20_00598 at 625.367 kb on + strand, within MPMX20_00598 at 625.402 kb on - strand, within MPMX20_00598 at 625.408 kb on + strand, within MPMX20_00598 at 625.408 kb on + strand, within MPMX20_00598 at 625.416 kb on - strand, within MPMX20_00598 at 625.416 kb on - strand, within MPMX20_00598 at 625.416 kb on - strand, within MPMX20_00598
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030 remove 623,387 - -1.6 623,387 - +1.7 623,387 - -0.4 623,387 - -0.1 623,387 - -1.0 623,389 - +0.5 623,393 - +0.1 623,393 - -1.7 623,393 - -1.0 623,393 - +3.0 623,393 - -0.4 623,398 - -3.2 623,398 - +1.8 623,398 - -0.3 623,398 - -1.2 623,398 - +0.2 623,398 - -1.5 623,398 - +1.6 623,398 - +7.8 623,398 - -1.0 623,398 - +3.9 623,400 - -1.8 623,400 - +2.6 623,405 - -0.5 623,406 - -0.4 623,406 - +2.1 623,408 - +0.4 623,408 - +0.6 623,408 - -2.2 623,408 - -0.7 623,408 - -0.2 623,408 - -4.0 623,408 - +1.7 623,408 - +0.6 623,408 - -0.8 623,408 - +0.3 623,408 - -0.2 623,408 - +0.2 623,408 - +0.2 623,408 - -1.4 623,408 - -0.4 623,408 - +2.6 623,408 - +0.7 623,408 - +0.9 623,408 - +3.7 623,408 - -1.0 623,408 - +0.3 623,408 - +1.4 623,410 - -2.3 623,410 - -2.4 623,410 - -2.3 623,410 - -1.4 623,415 - -0.4 623,415 - -0.0 623,415 - -0.4 623,415 - -0.1 623,415 - -0.3 623,415 - -2.0 623,415 - +1.2 623,415 - +0.4 623,415 - -0.1 623,420 - -2.8 623,420 - -0.4 623,420 - +0.5 623,420 - +0.4 623,420 - +0.2 623,430 - +1.0 623,430 - -0.4 623,430 - -0.9 623,431 - -0.8 623,434 - -1.3 623,440 - +2.7 623,444 - -3.9 623,444 - +0.9 623,444 - -2.2 623,444 - -0.2 623,444 - +0.8 623,444 - -2.1 623,444 - +0.4 623,444 - -1.3 623,444 - -0.7 623,444 - -0.4 623,445 - +1.0 623,445 - -0.1 623,445 - -0.2 623,445 - -0.6 623,445 - +1.8 623,447 + +2.7 623,447 + -1.3 623,447 + -1.7 623,447 + -0.4 623,450 - -2.1 623,450 - -1.0 623,450 - -0.9 623,450 - -2.0 623,450 - +1.2 623,450 - +0.7 623,450 - +0.2 623,450 - +0.5 623,455 - -1.8 623,455 - +2.0 623,455 - -1.0 623,455 - -0.1 623,455 - +1.0 623,455 - +1.2 623,455 - -1.2 623,455 - +0.0 623,455 - +3.0 623,455 - +0.4 623,455 - -1.3 623,455 - -0.3 623,455 - +1.3 623,455 - -1.2 623,455 - -2.1 623,455 - -0.7 623,455 - +0.2 623,455 - +1.6 623,455 - -0.6 623,455 - +1.9 623,455 - -0.7 623,455 - +0.6 623,455 - -0.8 623,455 - +0.5 623,455 - -2.0 623,455 - -1.3 623,455 - +3.4 623,455 - -0.7 623,455 - -1.0 623,455 - -1.5 623,455 - -2.0 623,455 - -3.5 623,455 - -0.8 623,455 - -2.1 623,455 - +1.0 623,455 - -0.5 623,455 - +2.4 623,455 - -0.9 623,455 - -2.1 623,455 - +1.9 623,455 - +0.4 623,455 - +0.8 623,455 - -0.7 623,455 - -0.8 623,455 - -1.1 623,455 - -0.7 623,455 - +0.5 623,455 - +0.2 623,455 - +3.6 623,455 - +0.7 623,455 - +2.7 623,455 - -2.1 623,455 - -1.5 623,455 - -0.1 623,455 - -0.6 623,455 - +0.6 623,465 - -2.5 623,465 - +0.4 623,465 - +1.0 623,465 - +1.9 623,465 - -0.0 623,465 - -2.6 623,465 - -0.6 623,465 - -0.4 623,465 - -1.3 623,465 - -1.3 623,465 - -1.3 623,465 - -0.6 623,465 - -0.6 623,465 - +0.3 623,466 - +0.4 623,470 - +1.2 623,475 - +1.5 623,475 - +3.2 623,475 - -1.3 623,478 - +1.7 623,488 - -0.1 623,488 - -1.7 623,493 - +0.7 623,498 - -3.3 623,498 - -3.3 623,498 - -1.3 623,498 - -1.2 623,500 + -0.1 623,503 - +1.4 623,511 - +2.2 623,521 - MPMX20_00596 0.10 -1.3 623,525 + MPMX20_00596 0.11 +0.4 623,533 - MPMX20_00596 0.11 +0.0 623,533 - MPMX20_00596 0.11 -1.1 623,533 - MPMX20_00596 0.11 -2.8 623,533 - MPMX20_00596 0.11 -0.7 623,533 - MPMX20_00596 0.11 -1.2 623,533 - MPMX20_00596 0.11 -0.1 623,533 - MPMX20_00596 0.11 +1.7 623,533 - MPMX20_00596 0.11 -2.0 623,533 - MPMX20_00596 0.11 -0.9 623,533 - MPMX20_00596 0.11 +0.6 623,533 - MPMX20_00596 0.11 -0.7 623,564 + MPMX20_00596 0.14 -1.7 623,577 - MPMX20_00596 0.16 -2.5 623,612 + MPMX20_00596 0.19 +0.6 623,620 - MPMX20_00596 0.20 -1.7 623,700 - MPMX20_00596 0.28 -2.4 623,700 - MPMX20_00596 0.28 +0.7 623,700 - MPMX20_00596 0.28 -1.3 623,718 + MPMX20_00596 0.30 -1.2 623,718 + MPMX20_00596 0.30 -1.9 623,718 + MPMX20_00596 0.30 -2.4 623,726 - MPMX20_00596 0.31 -0.1 623,726 - MPMX20_00596 0.31 -0.9 623,733 + MPMX20_00596 0.31 -0.2 623,733 + MPMX20_00596 0.31 +0.5 623,733 + MPMX20_00596 0.31 +0.2 623,741 - MPMX20_00596 0.32 -0.3 623,741 - MPMX20_00596 0.32 -0.5 623,741 - MPMX20_00596 0.32 -2.2 623,743 + MPMX20_00596 0.32 -2.0 623,762 + MPMX20_00596 0.34 -0.9 623,765 - MPMX20_00596 0.34 -1.3 623,802 + MPMX20_00596 0.38 -1.7 623,803 + MPMX20_00596 0.38 -1.2 623,810 - MPMX20_00596 0.39 +0.4 623,810 - MPMX20_00596 0.39 +2.0 623,810 - MPMX20_00596 0.39 +0.7 623,810 - MPMX20_00596 0.39 -2.5 623,818 - MPMX20_00596 0.40 -2.2 623,830 - MPMX20_00596 0.41 +0.7 623,882 + MPMX20_00596 0.46 -0.2 623,890 - MPMX20_00596 0.47 -0.3 623,898 + MPMX20_00596 0.48 +1.8 623,898 + MPMX20_00596 0.48 +0.3 623,901 - MPMX20_00596 0.48 -2.3 623,901 - MPMX20_00596 0.48 +1.2 623,906 - MPMX20_00596 0.48 -2.5 623,906 - MPMX20_00596 0.48 +2.4 623,909 + MPMX20_00596 0.49 +0.3 623,949 + MPMX20_00596 0.53 +1.5 623,949 + MPMX20_00596 0.53 -0.3 624,002 + MPMX20_00596 0.58 -0.3 624,029 + MPMX20_00596 0.61 -1.3 624,054 - MPMX20_00596 0.63 -2.1 624,061 + MPMX20_00596 0.64 -1.6 624,070 + MPMX20_00596 0.65 -0.1 624,099 + MPMX20_00596 0.68 -1.8 624,226 + MPMX20_00596 0.80 +0.3 624,234 + MPMX20_00596 0.81 -0.5 624,242 - MPMX20_00596 0.82 -0.6 624,242 - MPMX20_00596 0.82 -2.4 624,242 - MPMX20_00596 0.82 -0.7 624,341 + -0.4 624,394 - -0.0 624,417 - -4.2 624,418 - -2.5 624,513 - +2.7 624,537 + +0.9 624,562 - -1.2 624,592 - +0.6 624,641 + -3.6 624,641 + -1.0 624,697 + MPMX20_00597 0.17 +1.5 624,729 - MPMX20_00597 0.25 +2.3 624,813 + MPMX20_00597 0.45 +0.3 624,813 + MPMX20_00597 0.45 -0.8 624,813 + MPMX20_00597 0.45 -2.2 624,870 + MPMX20_00597 0.58 +2.0 624,870 + MPMX20_00597 0.58 -1.0 624,870 + MPMX20_00597 0.58 +0.1 624,894 + MPMX20_00597 0.64 -2.2 624,904 + MPMX20_00597 0.66 -0.9 624,904 + MPMX20_00597 0.66 +0.5 624,912 - MPMX20_00597 0.68 -0.1 624,912 - MPMX20_00597 0.68 +2.0 624,948 + MPMX20_00597 0.76 -0.8 624,948 + MPMX20_00597 0.76 +1.4 624,952 - MPMX20_00597 0.77 +1.4 624,954 + MPMX20_00597 0.78 -2.0 624,962 - MPMX20_00597 0.80 +0.0 624,962 - MPMX20_00597 0.80 +1.7 624,962 - MPMX20_00597 0.80 -2.2 624,962 - MPMX20_00597 0.80 +2.5 624,962 - MPMX20_00597 0.80 +6.0 624,983 - MPMX20_00597 0.85 -3.2 625,004 + MPMX20_00597 0.89 +0.1 625,040 - -0.3 625,057 + -2.1 625,065 - -4.4 625,083 - -1.3 625,112 + +1.0 625,158 - MPMX20_00598 0.12 -0.7 625,168 - MPMX20_00598 0.13 -0.9 625,172 + MPMX20_00598 0.14 -1.8 625,188 - MPMX20_00598 0.15 +0.6 625,301 + MPMX20_00598 0.26 +1.3 625,367 + MPMX20_00598 0.33 +2.2 625,402 - MPMX20_00598 0.37 +0.3 625,408 + MPMX20_00598 0.37 +0.4 625,408 + MPMX20_00598 0.37 -1.5 625,416 - MPMX20_00598 0.38 +1.5 625,416 - MPMX20_00598 0.38 +1.3 625,416 - MPMX20_00598 0.38 -0.4
Or see this region's nucleotide sequence