Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00436

Experiment: LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00433 and MPMX20_00434 are separated by 29 nucleotidesMPMX20_00434 and MPMX20_00435 are separated by 10 nucleotidesMPMX20_00435 and MPMX20_00436 are separated by 10 nucleotidesMPMX20_00436 and MPMX20_00437 overlap by 8 nucleotides MPMX20_00433: MPMX20_00433 - HTH-type transcriptional activator AmpR, at 446,644 to 447,519 _00433 MPMX20_00434: MPMX20_00434 - Fumarate reductase subunit D, at 447,549 to 447,908 _00434 MPMX20_00435: MPMX20_00435 - Fumarate reductase subunit C, at 447,919 to 448,314 _00435 MPMX20_00436: MPMX20_00436 - Fumarate reductase iron-sulfur subunit, at 448,325 to 449,059 _00436 MPMX20_00437: MPMX20_00437 - Fumarate reductase flavoprotein subunit, at 449,052 to 450,842 _00437 Position (kb) 448 449 450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 447.378 kb on + strand, within MPMX20_00433at 447.424 kb on - strand, within MPMX20_00433at 447.475 kb on - strandat 447.546 kb on - strandat 447.572 kb on + strandat 447.666 kb on + strand, within MPMX20_00434at 447.666 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.671 kb on + strand, within MPMX20_00434at 447.676 kb on + strand, within MPMX20_00434at 447.679 kb on - strand, within MPMX20_00434at 447.679 kb on - strand, within MPMX20_00434at 447.681 kb on - strand, within MPMX20_00434at 447.713 kb on - strand, within MPMX20_00434at 447.746 kb on - strand, within MPMX20_00434at 447.746 kb on - strand, within MPMX20_00434at 447.747 kb on - strand, within MPMX20_00434at 447.777 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.799 kb on - strand, within MPMX20_00434at 447.850 kb on + strand, within MPMX20_00434at 447.850 kb on + strand, within MPMX20_00434at 447.903 kb on + strandat 447.906 kb on - strandat 447.910 kb on + strandat 447.910 kb on + strandat 447.915 kb on + strandat 447.920 kb on + strandat 447.920 kb on + strandat 447.920 kb on + strandat 447.922 kb on - strandat 447.923 kb on - strandat 447.928 kb on - strandat 447.928 kb on - strandat 447.928 kb on - strandat 447.940 kb on + strandat 448.137 kb on + strand, within MPMX20_00435at 448.186 kb on - strand, within MPMX20_00435at 448.194 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.233 kb on + strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.241 kb on - strand, within MPMX20_00435at 448.278 kb on - strandat 448.296 kb on - strandat 448.333 kb on + strandat 448.333 kb on + strandat 448.379 kb on - strandat 448.379 kb on - strandat 448.389 kb on - strandat 448.420 kb on + strand, within MPMX20_00436at 448.428 kb on - strand, within MPMX20_00436at 448.468 kb on - strand, within MPMX20_00436at 448.501 kb on + strand, within MPMX20_00436at 448.511 kb on + strand, within MPMX20_00436at 448.516 kb on + strand, within MPMX20_00436at 448.526 kb on - strand, within MPMX20_00436at 448.558 kb on + strand, within MPMX20_00436at 448.598 kb on - strand, within MPMX20_00436at 448.600 kb on + strand, within MPMX20_00436at 448.603 kb on - strand, within MPMX20_00436at 448.603 kb on - strand, within MPMX20_00436at 448.608 kb on - strand, within MPMX20_00436at 448.651 kb on + strand, within MPMX20_00436at 448.659 kb on + strand, within MPMX20_00436at 448.772 kb on - strand, within MPMX20_00436at 448.788 kb on + strand, within MPMX20_00436at 448.805 kb on - strand, within MPMX20_00436at 448.912 kb on + strand, within MPMX20_00436at 448.999 kb on - strandat 449.011 kb on - strandat 449.146 kb on - strandat 449.176 kb on + strandat 449.180 kb on + strandat 449.226 kb on + strandat 449.226 kb on + strandat 449.285 kb on + strand, within MPMX20_00437at 449.290 kb on - strand, within MPMX20_00437at 449.308 kb on - strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.326 kb on + strand, within MPMX20_00437at 449.331 kb on + strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.334 kb on - strand, within MPMX20_00437at 449.336 kb on + strand, within MPMX20_00437at 449.336 kb on + strand, within MPMX20_00437at 449.339 kb on - strand, within MPMX20_00437at 449.344 kb on - strand, within MPMX20_00437at 449.344 kb on - strand, within MPMX20_00437at 449.349 kb on - strand, within MPMX20_00437at 449.429 kb on + strand, within MPMX20_00437at 449.429 kb on + strand, within MPMX20_00437at 449.429 kb on + strand, within MPMX20_00437at 449.437 kb on - strand, within MPMX20_00437at 449.437 kb on - strand, within MPMX20_00437at 449.437 kb on - strand, within MPMX20_00437at 449.507 kb on - strand, within MPMX20_00437at 449.528 kb on - strand, within MPMX20_00437at 449.593 kb on - strand, within MPMX20_00437at 449.677 kb on + strand, within MPMX20_00437at 449.682 kb on + strand, within MPMX20_00437at 449.744 kb on + strand, within MPMX20_00437at 449.755 kb on - strand, within MPMX20_00437at 449.824 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.894 kb on + strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.902 kb on - strand, within MPMX20_00437at 449.914 kb on - strand, within MPMX20_00437at 449.931 kb on + strand, within MPMX20_00437at 449.937 kb on + strand, within MPMX20_00437at 449.939 kb on - strand, within MPMX20_00437at 449.993 kb on - strand, within MPMX20_00437at 450.023 kb on + strand, within MPMX20_00437

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Chryseobacterium_gleum_TBS_030
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447,378 + MPMX20_00433 0.84 +0.2
447,424 - MPMX20_00433 0.89 +0.3
447,475 - +1.4
447,546 - -0.9
447,572 + -0.5
447,666 + MPMX20_00434 0.33 +2.0
447,666 + MPMX20_00434 0.33 -0.9
447,671 + MPMX20_00434 0.34 +1.4
447,671 + MPMX20_00434 0.34 -1.9
447,671 + MPMX20_00434 0.34 -2.4
447,671 + MPMX20_00434 0.34 -3.0
447,676 + MPMX20_00434 0.35 -0.6
447,679 - MPMX20_00434 0.36 -0.5
447,679 - MPMX20_00434 0.36 -4.5
447,681 - MPMX20_00434 0.37 -1.1
447,713 - MPMX20_00434 0.46 -1.1
447,746 - MPMX20_00434 0.55 -3.8
447,746 - MPMX20_00434 0.55 +1.1
447,747 - MPMX20_00434 0.55 -1.5
447,777 - MPMX20_00434 0.63 -0.3
447,799 - MPMX20_00434 0.69 -0.1
447,799 - MPMX20_00434 0.69 -2.3
447,799 - MPMX20_00434 0.69 +0.7
447,799 - MPMX20_00434 0.69 -0.6
447,850 + MPMX20_00434 0.84 -1.8
447,850 + MPMX20_00434 0.84 -4.0
447,903 + -1.4
447,906 - +0.6
447,910 + -2.1
447,910 + -3.5
447,915 + -4.3
447,920 + -0.5
447,920 + +1.1
447,920 + -0.9
447,922 - +2.1
447,923 - -0.5
447,928 - +1.3
447,928 - -1.5
447,928 - +2.3
447,940 + +1.7
448,137 + MPMX20_00435 0.55 -0.4
448,186 - MPMX20_00435 0.67 +0.4
448,194 + MPMX20_00435 0.69 -2.8
448,233 + MPMX20_00435 0.79 -2.8
448,233 + MPMX20_00435 0.79 +0.4
448,233 + MPMX20_00435 0.79 -0.4
448,233 + MPMX20_00435 0.79 +3.0
448,233 + MPMX20_00435 0.79 -3.1
448,241 - MPMX20_00435 0.81 -1.2
448,241 - MPMX20_00435 0.81 +0.2
448,241 - MPMX20_00435 0.81 -0.9
448,278 - +1.0
448,296 - -2.1
448,333 + -1.2
448,333 + -3.7
448,379 - -1.2
448,379 - -1.3
448,389 - -0.1
448,420 + MPMX20_00436 0.13 -0.8
448,428 - MPMX20_00436 0.14 -0.8
448,468 - MPMX20_00436 0.19 +0.4
448,501 + MPMX20_00436 0.24 -1.0
448,511 + MPMX20_00436 0.25 -0.8
448,516 + MPMX20_00436 0.26 +0.4
448,526 - MPMX20_00436 0.27 -2.7
448,558 + MPMX20_00436 0.32 +1.5
448,598 - MPMX20_00436 0.37 +0.2
448,600 + MPMX20_00436 0.37 -2.9
448,603 - MPMX20_00436 0.38 -3.1
448,603 - MPMX20_00436 0.38 -0.1
448,608 - MPMX20_00436 0.39 -0.7
448,651 + MPMX20_00436 0.44 -3.7
448,659 + MPMX20_00436 0.45 -2.1
448,772 - MPMX20_00436 0.61 -0.3
448,788 + MPMX20_00436 0.63 -2.7
448,805 - MPMX20_00436 0.65 +0.7
448,912 + MPMX20_00436 0.80 -2.4
448,999 - -1.4
449,011 - -0.9
449,146 - -0.6
449,176 + +0.7
449,180 + -0.1
449,226 + +1.4
449,226 + -3.3
449,285 + MPMX20_00437 0.13 +1.5
449,290 - MPMX20_00437 0.13 -3.3
449,308 - MPMX20_00437 0.14 -2.0
449,326 + MPMX20_00437 0.15 +0.1
449,326 + MPMX20_00437 0.15 -0.5
449,326 + MPMX20_00437 0.15 +0.6
449,326 + MPMX20_00437 0.15 +0.4
449,326 + MPMX20_00437 0.15 +0.3
449,326 + MPMX20_00437 0.15 +0.1
449,331 + MPMX20_00437 0.16 -1.4
449,334 - MPMX20_00437 0.16 +0.1
449,334 - MPMX20_00437 0.16 -1.7
449,334 - MPMX20_00437 0.16 -4.3
449,334 - MPMX20_00437 0.16 -0.0
449,334 - MPMX20_00437 0.16 -2.1
449,334 - MPMX20_00437 0.16 -2.5
449,334 - MPMX20_00437 0.16 +1.7
449,334 - MPMX20_00437 0.16 -0.8
449,334 - MPMX20_00437 0.16 -0.8
449,336 + MPMX20_00437 0.16 -3.1
449,336 + MPMX20_00437 0.16 -1.5
449,339 - MPMX20_00437 0.16 -1.2
449,344 - MPMX20_00437 0.16 -2.3
449,344 - MPMX20_00437 0.16 -1.0
449,349 - MPMX20_00437 0.17 -0.5
449,429 + MPMX20_00437 0.21 -1.9
449,429 + MPMX20_00437 0.21 -0.2
449,429 + MPMX20_00437 0.21 -1.8
449,437 - MPMX20_00437 0.21 -1.4
449,437 - MPMX20_00437 0.21 -0.8
449,437 - MPMX20_00437 0.21 -2.8
449,507 - MPMX20_00437 0.25 -3.0
449,528 - MPMX20_00437 0.27 -1.8
449,593 - MPMX20_00437 0.30 +1.7
449,677 + MPMX20_00437 0.35 -0.1
449,682 + MPMX20_00437 0.35 +1.1
449,744 + MPMX20_00437 0.39 -1.3
449,755 - MPMX20_00437 0.39 -1.9
449,824 + MPMX20_00437 0.43 -1.5
449,894 + MPMX20_00437 0.47 -0.9
449,894 + MPMX20_00437 0.47 -0.7
449,894 + MPMX20_00437 0.47 -2.3
449,894 + MPMX20_00437 0.47 -1.5
449,894 + MPMX20_00437 0.47 -2.6
449,902 - MPMX20_00437 0.47 +1.3
449,902 - MPMX20_00437 0.47 -2.0
449,902 - MPMX20_00437 0.47 -1.4
449,902 - MPMX20_00437 0.47 -0.0
449,902 - MPMX20_00437 0.47 -2.2
449,902 - MPMX20_00437 0.47 -1.6
449,914 - MPMX20_00437 0.48 -0.6
449,931 + MPMX20_00437 0.49 +0.7
449,937 + MPMX20_00437 0.49 -1.8
449,939 - MPMX20_00437 0.50 -0.6
449,993 - MPMX20_00437 0.53 -0.1
450,023 + MPMX20_00437 0.54 -2.0

Or see this region's nucleotide sequence