Experiment: RCH2_defined_glucose plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01670 and MPMX20_01671 overlap by 20 nucleotides MPMX20_01671 and MPMX20_01672 are separated by 14 nucleotides MPMX20_01672 and MPMX20_01673 overlap by 4 nucleotides
MPMX20_01670: MPMX20_01670 - L-cystine transport system permease protein YecS, at 1,768,245 to 1,768,904
_01670
MPMX20_01671: MPMX20_01671 - Glutamine transport ATP-binding protein GlnQ, at 1,768,885 to 1,769,622
_01671
MPMX20_01672: MPMX20_01672 - (S)-ureidoglycine--glyoxylate transaminase, at 1,769,637 to 1,770,878
_01672
MPMX20_01673: MPMX20_01673 - N-carbamoyl-L-amino acid hydrolase, at 1,770,875 to 1,772,116
_01673
Position (kb)
1769
1770
1771 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1768.754 kb on + strand, within MPMX20_01670 at 1768.754 kb on + strand, within MPMX20_01670 at 1768.754 kb on + strand, within MPMX20_01670 at 1768.754 kb on + strand, within MPMX20_01670 at 1768.762 kb on - strand, within MPMX20_01670 at 1768.765 kb on + strand, within MPMX20_01670 at 1768.925 kb on - strand at 1768.938 kb on + strand at 1768.946 kb on + strand at 1768.959 kb on - strand, within MPMX20_01671 at 1768.969 kb on + strand, within MPMX20_01671 at 1768.977 kb on - strand, within MPMX20_01671 at 1769.017 kb on + strand, within MPMX20_01671 at 1769.025 kb on - strand, within MPMX20_01671 at 1769.027 kb on + strand, within MPMX20_01671 at 1769.069 kb on - strand, within MPMX20_01671 at 1769.102 kb on - strand, within MPMX20_01671 at 1769.104 kb on - strand, within MPMX20_01671 at 1769.197 kb on + strand, within MPMX20_01671 at 1769.197 kb on + strand, within MPMX20_01671 at 1769.229 kb on - strand, within MPMX20_01671 at 1769.253 kb on + strand, within MPMX20_01671 at 1769.321 kb on - strand, within MPMX20_01671 at 1769.359 kb on + strand, within MPMX20_01671 at 1769.365 kb on - strand, within MPMX20_01671 at 1769.413 kb on + strand, within MPMX20_01671 at 1769.415 kb on + strand, within MPMX20_01671 at 1769.415 kb on + strand, within MPMX20_01671 at 1769.416 kb on - strand, within MPMX20_01671 at 1769.423 kb on - strand, within MPMX20_01671 at 1769.447 kb on + strand, within MPMX20_01671 at 1769.457 kb on + strand, within MPMX20_01671 at 1769.494 kb on + strand, within MPMX20_01671 at 1769.568 kb on + strand at 1769.576 kb on + strand at 1769.576 kb on + strand at 1769.702 kb on - strand at 1769.702 kb on - strand at 1769.707 kb on - strand at 1769.707 kb on - strand at 1769.833 kb on - strand, within MPMX20_01672 at 1769.943 kb on - strand, within MPMX20_01672 at 1769.975 kb on + strand, within MPMX20_01672 at 1769.975 kb on + strand, within MPMX20_01672 at 1769.975 kb on + strand, within MPMX20_01672 at 1770.023 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.077 kb on - strand, within MPMX20_01672 at 1770.113 kb on + strand, within MPMX20_01672 at 1770.121 kb on - strand, within MPMX20_01672 at 1770.141 kb on + strand, within MPMX20_01672 at 1770.160 kb on + strand, within MPMX20_01672 at 1770.193 kb on - strand, within MPMX20_01672 at 1770.259 kb on - strand, within MPMX20_01672 at 1770.273 kb on - strand, within MPMX20_01672 at 1770.283 kb on + strand, within MPMX20_01672 at 1770.407 kb on + strand, within MPMX20_01672 at 1770.463 kb on - strand, within MPMX20_01672 at 1770.532 kb on + strand, within MPMX20_01672 at 1770.532 kb on + strand, within MPMX20_01672 at 1770.533 kb on - strand, within MPMX20_01672 at 1770.535 kb on - strand, within MPMX20_01672 at 1770.542 kb on + strand, within MPMX20_01672 at 1770.542 kb on + strand, within MPMX20_01672 at 1770.550 kb on + strand, within MPMX20_01672 at 1770.596 kb on + strand, within MPMX20_01672 at 1770.758 kb on - strand at 1770.762 kb on + strand at 1770.772 kb on + strand at 1770.792 kb on + strand at 1770.792 kb on + strand at 1770.800 kb on - strand at 1770.824 kb on + strand at 1770.832 kb on - strand at 1770.924 kb on + strand at 1771.020 kb on + strand, within MPMX20_01673 at 1771.028 kb on - strand, within MPMX20_01673 at 1771.054 kb on - strand, within MPMX20_01673 at 1771.109 kb on + strand, within MPMX20_01673 at 1771.109 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.132 kb on - strand, within MPMX20_01673 at 1771.132 kb on - strand, within MPMX20_01673 at 1771.132 kb on - strand, within MPMX20_01673 at 1771.299 kb on - strand, within MPMX20_01673 at 1771.385 kb on + strand, within MPMX20_01673 at 1771.386 kb on + strand, within MPMX20_01673 at 1771.386 kb on + strand, within MPMX20_01673 at 1771.393 kb on - strand, within MPMX20_01673 at 1771.473 kb on + strand, within MPMX20_01673 at 1771.473 kb on + strand, within MPMX20_01673 at 1771.481 kb on - strand, within MPMX20_01673 at 1771.496 kb on - strand, within MPMX20_01673 at 1771.498 kb on + strand, within MPMX20_01673 at 1771.529 kb on + strand, within MPMX20_01673 at 1771.564 kb on + strand, within MPMX20_01673 at 1771.564 kb on + strand, within MPMX20_01673 at 1771.572 kb on - strand, within MPMX20_01673 at 1771.572 kb on - strand, within MPMX20_01673 at 1771.696 kb on + strand, within MPMX20_01673 at 1771.735 kb on + strand, within MPMX20_01673 at 1771.792 kb on + strand, within MPMX20_01673 at 1771.815 kb on - strand, within MPMX20_01673 at 1771.871 kb on - strand, within MPMX20_01673
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 1,768,754 + MPMX20_01670 0.77 -0.7 1,768,754 + MPMX20_01670 0.77 +3.6 1,768,754 + MPMX20_01670 0.77 +0.1 1,768,754 + MPMX20_01670 0.77 +0.6 1,768,762 - MPMX20_01670 0.78 +1.8 1,768,765 + MPMX20_01670 0.79 -1.3 1,768,925 - +2.0 1,768,938 + -1.0 1,768,946 + +1.4 1,768,959 - MPMX20_01671 0.10 -1.8 1,768,969 + MPMX20_01671 0.11 +0.7 1,768,977 - MPMX20_01671 0.12 +0.6 1,769,017 + MPMX20_01671 0.18 +0.3 1,769,025 - MPMX20_01671 0.19 -0.0 1,769,027 + MPMX20_01671 0.19 -0.1 1,769,069 - MPMX20_01671 0.25 -1.3 1,769,102 - MPMX20_01671 0.29 -0.4 1,769,104 - MPMX20_01671 0.30 +0.4 1,769,197 + MPMX20_01671 0.42 -0.5 1,769,197 + MPMX20_01671 0.42 +2.2 1,769,229 - MPMX20_01671 0.47 +1.0 1,769,253 + MPMX20_01671 0.50 -1.9 1,769,321 - MPMX20_01671 0.59 +1.7 1,769,359 + MPMX20_01671 0.64 -1.3 1,769,365 - MPMX20_01671 0.65 +0.1 1,769,413 + MPMX20_01671 0.72 -0.0 1,769,415 + MPMX20_01671 0.72 -1.7 1,769,415 + MPMX20_01671 0.72 +0.3 1,769,416 - MPMX20_01671 0.72 -2.1 1,769,423 - MPMX20_01671 0.73 -1.8 1,769,447 + MPMX20_01671 0.76 +0.0 1,769,457 + MPMX20_01671 0.78 +1.2 1,769,494 + MPMX20_01671 0.83 -1.6 1,769,568 + -2.7 1,769,576 + -1.4 1,769,576 + +0.4 1,769,702 - -0.5 1,769,702 - -1.6 1,769,707 - +0.8 1,769,707 - -1.9 1,769,833 - MPMX20_01672 0.16 +1.0 1,769,943 - MPMX20_01672 0.25 -0.2 1,769,975 + MPMX20_01672 0.27 -0.4 1,769,975 + MPMX20_01672 0.27 -0.2 1,769,975 + MPMX20_01672 0.27 -1.4 1,770,023 + MPMX20_01672 0.31 -1.6 1,770,059 + MPMX20_01672 0.34 +2.3 1,770,059 + MPMX20_01672 0.34 -0.8 1,770,059 + MPMX20_01672 0.34 -0.5 1,770,059 + MPMX20_01672 0.34 +0.7 1,770,077 - MPMX20_01672 0.35 +0.3 1,770,113 + MPMX20_01672 0.38 -1.5 1,770,121 - MPMX20_01672 0.39 -1.4 1,770,141 + MPMX20_01672 0.41 +1.9 1,770,160 + MPMX20_01672 0.42 -1.5 1,770,193 - MPMX20_01672 0.45 -0.0 1,770,259 - MPMX20_01672 0.50 +1.2 1,770,273 - MPMX20_01672 0.51 +4.1 1,770,283 + MPMX20_01672 0.52 +0.4 1,770,407 + MPMX20_01672 0.62 -4.1 1,770,463 - MPMX20_01672 0.67 -2.3 1,770,532 + MPMX20_01672 0.72 -2.6 1,770,532 + MPMX20_01672 0.72 +0.7 1,770,533 - MPMX20_01672 0.72 +1.8 1,770,535 - MPMX20_01672 0.72 +0.7 1,770,542 + MPMX20_01672 0.73 -1.9 1,770,542 + MPMX20_01672 0.73 +0.4 1,770,550 + MPMX20_01672 0.74 +1.8 1,770,596 + MPMX20_01672 0.77 -0.1 1,770,758 - -1.6 1,770,762 + -3.1 1,770,772 + -2.4 1,770,792 + +0.8 1,770,792 + -1.8 1,770,800 - -1.2 1,770,824 + -0.6 1,770,832 - +0.7 1,770,924 + -0.3 1,771,020 + MPMX20_01673 0.12 +1.0 1,771,028 - MPMX20_01673 0.12 -1.6 1,771,054 - MPMX20_01673 0.14 +0.6 1,771,109 + MPMX20_01673 0.19 +0.2 1,771,109 + MPMX20_01673 0.19 -3.3 1,771,124 + MPMX20_01673 0.20 -0.2 1,771,124 + MPMX20_01673 0.20 -3.1 1,771,124 + MPMX20_01673 0.20 -1.8 1,771,124 + MPMX20_01673 0.20 +1.0 1,771,132 - MPMX20_01673 0.21 +3.0 1,771,132 - MPMX20_01673 0.21 -3.0 1,771,132 - MPMX20_01673 0.21 +0.1 1,771,299 - MPMX20_01673 0.34 -1.3 1,771,385 + MPMX20_01673 0.41 -0.0 1,771,386 + MPMX20_01673 0.41 -0.8 1,771,386 + MPMX20_01673 0.41 -1.0 1,771,393 - MPMX20_01673 0.42 +0.8 1,771,473 + MPMX20_01673 0.48 -3.2 1,771,473 + MPMX20_01673 0.48 -1.2 1,771,481 - MPMX20_01673 0.49 -2.8 1,771,496 - MPMX20_01673 0.50 -0.9 1,771,498 + MPMX20_01673 0.50 -1.6 1,771,529 + MPMX20_01673 0.53 -0.6 1,771,564 + MPMX20_01673 0.55 -1.5 1,771,564 + MPMX20_01673 0.55 +0.8 1,771,572 - MPMX20_01673 0.56 -1.1 1,771,572 - MPMX20_01673 0.56 +1.2 1,771,696 + MPMX20_01673 0.66 +0.0 1,771,735 + MPMX20_01673 0.69 -2.4 1,771,792 + MPMX20_01673 0.74 +1.5 1,771,815 - MPMX20_01673 0.76 -0.8 1,771,871 - MPMX20_01673 0.80 +0.2
Or see this region's nucleotide sequence