Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01672

Experiment: RCH2_defined_glucose plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01670 and MPMX20_01671 overlap by 20 nucleotidesMPMX20_01671 and MPMX20_01672 are separated by 14 nucleotidesMPMX20_01672 and MPMX20_01673 overlap by 4 nucleotides MPMX20_01670: MPMX20_01670 - L-cystine transport system permease protein YecS, at 1,768,245 to 1,768,904 _01670 MPMX20_01671: MPMX20_01671 - Glutamine transport ATP-binding protein GlnQ, at 1,768,885 to 1,769,622 _01671 MPMX20_01672: MPMX20_01672 - (S)-ureidoglycine--glyoxylate transaminase, at 1,769,637 to 1,770,878 _01672 MPMX20_01673: MPMX20_01673 - N-carbamoyl-L-amino acid hydrolase, at 1,770,875 to 1,772,116 _01673 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1768.754 kb on + strand, within MPMX20_01670at 1768.754 kb on + strand, within MPMX20_01670at 1768.754 kb on + strand, within MPMX20_01670at 1768.754 kb on + strand, within MPMX20_01670at 1768.762 kb on - strand, within MPMX20_01670at 1768.765 kb on + strand, within MPMX20_01670at 1768.925 kb on - strandat 1768.938 kb on + strandat 1768.946 kb on + strandat 1768.959 kb on - strand, within MPMX20_01671at 1768.969 kb on + strand, within MPMX20_01671at 1768.977 kb on - strand, within MPMX20_01671at 1769.017 kb on + strand, within MPMX20_01671at 1769.025 kb on - strand, within MPMX20_01671at 1769.027 kb on + strand, within MPMX20_01671at 1769.069 kb on - strand, within MPMX20_01671at 1769.102 kb on - strand, within MPMX20_01671at 1769.104 kb on - strand, within MPMX20_01671at 1769.197 kb on + strand, within MPMX20_01671at 1769.197 kb on + strand, within MPMX20_01671at 1769.229 kb on - strand, within MPMX20_01671at 1769.253 kb on + strand, within MPMX20_01671at 1769.321 kb on - strand, within MPMX20_01671at 1769.359 kb on + strand, within MPMX20_01671at 1769.365 kb on - strand, within MPMX20_01671at 1769.413 kb on + strand, within MPMX20_01671at 1769.415 kb on + strand, within MPMX20_01671at 1769.415 kb on + strand, within MPMX20_01671at 1769.416 kb on - strand, within MPMX20_01671at 1769.423 kb on - strand, within MPMX20_01671at 1769.447 kb on + strand, within MPMX20_01671at 1769.457 kb on + strand, within MPMX20_01671at 1769.494 kb on + strand, within MPMX20_01671at 1769.568 kb on + strandat 1769.576 kb on + strandat 1769.576 kb on + strandat 1769.702 kb on - strandat 1769.702 kb on - strandat 1769.707 kb on - strandat 1769.707 kb on - strandat 1769.833 kb on - strand, within MPMX20_01672at 1769.943 kb on - strand, within MPMX20_01672at 1769.975 kb on + strand, within MPMX20_01672at 1769.975 kb on + strand, within MPMX20_01672at 1769.975 kb on + strand, within MPMX20_01672at 1770.023 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.077 kb on - strand, within MPMX20_01672at 1770.113 kb on + strand, within MPMX20_01672at 1770.121 kb on - strand, within MPMX20_01672at 1770.141 kb on + strand, within MPMX20_01672at 1770.160 kb on + strand, within MPMX20_01672at 1770.193 kb on - strand, within MPMX20_01672at 1770.259 kb on - strand, within MPMX20_01672at 1770.273 kb on - strand, within MPMX20_01672at 1770.283 kb on + strand, within MPMX20_01672at 1770.407 kb on + strand, within MPMX20_01672at 1770.463 kb on - strand, within MPMX20_01672at 1770.532 kb on + strand, within MPMX20_01672at 1770.532 kb on + strand, within MPMX20_01672at 1770.533 kb on - strand, within MPMX20_01672at 1770.535 kb on - strand, within MPMX20_01672at 1770.542 kb on + strand, within MPMX20_01672at 1770.542 kb on + strand, within MPMX20_01672at 1770.550 kb on + strand, within MPMX20_01672at 1770.596 kb on + strand, within MPMX20_01672at 1770.758 kb on - strandat 1770.762 kb on + strandat 1770.772 kb on + strandat 1770.792 kb on + strandat 1770.792 kb on + strandat 1770.800 kb on - strandat 1770.824 kb on + strandat 1770.832 kb on - strandat 1770.924 kb on + strandat 1771.020 kb on + strand, within MPMX20_01673at 1771.028 kb on - strand, within MPMX20_01673at 1771.054 kb on - strand, within MPMX20_01673at 1771.109 kb on + strand, within MPMX20_01673at 1771.109 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.132 kb on - strand, within MPMX20_01673at 1771.132 kb on - strand, within MPMX20_01673at 1771.132 kb on - strand, within MPMX20_01673at 1771.299 kb on - strand, within MPMX20_01673at 1771.385 kb on + strand, within MPMX20_01673at 1771.386 kb on + strand, within MPMX20_01673at 1771.386 kb on + strand, within MPMX20_01673at 1771.393 kb on - strand, within MPMX20_01673at 1771.473 kb on + strand, within MPMX20_01673at 1771.473 kb on + strand, within MPMX20_01673at 1771.481 kb on - strand, within MPMX20_01673at 1771.496 kb on - strand, within MPMX20_01673at 1771.498 kb on + strand, within MPMX20_01673at 1771.529 kb on + strand, within MPMX20_01673at 1771.564 kb on + strand, within MPMX20_01673at 1771.564 kb on + strand, within MPMX20_01673at 1771.572 kb on - strand, within MPMX20_01673at 1771.572 kb on - strand, within MPMX20_01673at 1771.696 kb on + strand, within MPMX20_01673at 1771.735 kb on + strand, within MPMX20_01673at 1771.792 kb on + strand, within MPMX20_01673at 1771.815 kb on - strand, within MPMX20_01673at 1771.871 kb on - strand, within MPMX20_01673

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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1,768,754 + MPMX20_01670 0.77 -0.7
1,768,754 + MPMX20_01670 0.77 +3.6
1,768,754 + MPMX20_01670 0.77 +0.1
1,768,754 + MPMX20_01670 0.77 +0.6
1,768,762 - MPMX20_01670 0.78 +1.8
1,768,765 + MPMX20_01670 0.79 -1.3
1,768,925 - +2.0
1,768,938 + -1.0
1,768,946 + +1.4
1,768,959 - MPMX20_01671 0.10 -1.8
1,768,969 + MPMX20_01671 0.11 +0.7
1,768,977 - MPMX20_01671 0.12 +0.6
1,769,017 + MPMX20_01671 0.18 +0.3
1,769,025 - MPMX20_01671 0.19 -0.0
1,769,027 + MPMX20_01671 0.19 -0.1
1,769,069 - MPMX20_01671 0.25 -1.3
1,769,102 - MPMX20_01671 0.29 -0.4
1,769,104 - MPMX20_01671 0.30 +0.4
1,769,197 + MPMX20_01671 0.42 -0.5
1,769,197 + MPMX20_01671 0.42 +2.2
1,769,229 - MPMX20_01671 0.47 +1.0
1,769,253 + MPMX20_01671 0.50 -1.9
1,769,321 - MPMX20_01671 0.59 +1.7
1,769,359 + MPMX20_01671 0.64 -1.3
1,769,365 - MPMX20_01671 0.65 +0.1
1,769,413 + MPMX20_01671 0.72 -0.0
1,769,415 + MPMX20_01671 0.72 -1.7
1,769,415 + MPMX20_01671 0.72 +0.3
1,769,416 - MPMX20_01671 0.72 -2.1
1,769,423 - MPMX20_01671 0.73 -1.8
1,769,447 + MPMX20_01671 0.76 +0.0
1,769,457 + MPMX20_01671 0.78 +1.2
1,769,494 + MPMX20_01671 0.83 -1.6
1,769,568 + -2.7
1,769,576 + -1.4
1,769,576 + +0.4
1,769,702 - -0.5
1,769,702 - -1.6
1,769,707 - +0.8
1,769,707 - -1.9
1,769,833 - MPMX20_01672 0.16 +1.0
1,769,943 - MPMX20_01672 0.25 -0.2
1,769,975 + MPMX20_01672 0.27 -0.4
1,769,975 + MPMX20_01672 0.27 -0.2
1,769,975 + MPMX20_01672 0.27 -1.4
1,770,023 + MPMX20_01672 0.31 -1.6
1,770,059 + MPMX20_01672 0.34 +2.3
1,770,059 + MPMX20_01672 0.34 -0.8
1,770,059 + MPMX20_01672 0.34 -0.5
1,770,059 + MPMX20_01672 0.34 +0.7
1,770,077 - MPMX20_01672 0.35 +0.3
1,770,113 + MPMX20_01672 0.38 -1.5
1,770,121 - MPMX20_01672 0.39 -1.4
1,770,141 + MPMX20_01672 0.41 +1.9
1,770,160 + MPMX20_01672 0.42 -1.5
1,770,193 - MPMX20_01672 0.45 -0.0
1,770,259 - MPMX20_01672 0.50 +1.2
1,770,273 - MPMX20_01672 0.51 +4.1
1,770,283 + MPMX20_01672 0.52 +0.4
1,770,407 + MPMX20_01672 0.62 -4.1
1,770,463 - MPMX20_01672 0.67 -2.3
1,770,532 + MPMX20_01672 0.72 -2.6
1,770,532 + MPMX20_01672 0.72 +0.7
1,770,533 - MPMX20_01672 0.72 +1.8
1,770,535 - MPMX20_01672 0.72 +0.7
1,770,542 + MPMX20_01672 0.73 -1.9
1,770,542 + MPMX20_01672 0.73 +0.4
1,770,550 + MPMX20_01672 0.74 +1.8
1,770,596 + MPMX20_01672 0.77 -0.1
1,770,758 - -1.6
1,770,762 + -3.1
1,770,772 + -2.4
1,770,792 + +0.8
1,770,792 + -1.8
1,770,800 - -1.2
1,770,824 + -0.6
1,770,832 - +0.7
1,770,924 + -0.3
1,771,020 + MPMX20_01673 0.12 +1.0
1,771,028 - MPMX20_01673 0.12 -1.6
1,771,054 - MPMX20_01673 0.14 +0.6
1,771,109 + MPMX20_01673 0.19 +0.2
1,771,109 + MPMX20_01673 0.19 -3.3
1,771,124 + MPMX20_01673 0.20 -0.2
1,771,124 + MPMX20_01673 0.20 -3.1
1,771,124 + MPMX20_01673 0.20 -1.8
1,771,124 + MPMX20_01673 0.20 +1.0
1,771,132 - MPMX20_01673 0.21 +3.0
1,771,132 - MPMX20_01673 0.21 -3.0
1,771,132 - MPMX20_01673 0.21 +0.1
1,771,299 - MPMX20_01673 0.34 -1.3
1,771,385 + MPMX20_01673 0.41 -0.0
1,771,386 + MPMX20_01673 0.41 -0.8
1,771,386 + MPMX20_01673 0.41 -1.0
1,771,393 - MPMX20_01673 0.42 +0.8
1,771,473 + MPMX20_01673 0.48 -3.2
1,771,473 + MPMX20_01673 0.48 -1.2
1,771,481 - MPMX20_01673 0.49 -2.8
1,771,496 - MPMX20_01673 0.50 -0.9
1,771,498 + MPMX20_01673 0.50 -1.6
1,771,529 + MPMX20_01673 0.53 -0.6
1,771,564 + MPMX20_01673 0.55 -1.5
1,771,564 + MPMX20_01673 0.55 +0.8
1,771,572 - MPMX20_01673 0.56 -1.1
1,771,572 - MPMX20_01673 0.56 +1.2
1,771,696 + MPMX20_01673 0.66 +0.0
1,771,735 + MPMX20_01673 0.69 -2.4
1,771,792 + MPMX20_01673 0.74 +1.5
1,771,815 - MPMX20_01673 0.76 -0.8
1,771,871 - MPMX20_01673 0.80 +0.2

Or see this region's nucleotide sequence