Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04390 and MPMX20_04391 overlap by 1 nucleotides MPMX20_04391 and MPMX20_04392 are separated by 32 nucleotides MPMX20_04392 and MPMX20_04393 are separated by 145 nucleotides
MPMX20_04390: MPMX20_04390 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 4,580,659 to 4,581,351
_04390
MPMX20_04391: MPMX20_04391 - Hydroxypyruvate reductase, at 4,581,351 to 4,582,289
_04391
MPMX20_04392: MPMX20_04392 - hypothetical protein, at 4,582,322 to 4,583,602
_04392
MPMX20_04393: MPMX20_04393 - Low-affinity inorganic phosphate transporter 1, at 4,583,748 to 4,585,247
_04393
Position (kb)
4582
4583
4584 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4581.377 kb on - strand at 4581.396 kb on + strand at 4581.421 kb on + strand at 4581.421 kb on + strand at 4581.429 kb on - strand at 4581.484 kb on - strand, within MPMX20_04391 at 4581.485 kb on + strand, within MPMX20_04391 at 4581.485 kb on + strand, within MPMX20_04391 at 4581.493 kb on - strand, within MPMX20_04391 at 4581.493 kb on - strand, within MPMX20_04391 at 4581.524 kb on - strand, within MPMX20_04391 at 4581.605 kb on - strand, within MPMX20_04391 at 4581.605 kb on - strand, within MPMX20_04391 at 4581.605 kb on - strand, within MPMX20_04391 at 4581.607 kb on - strand, within MPMX20_04391 at 4581.647 kb on - strand, within MPMX20_04391 at 4581.687 kb on + strand, within MPMX20_04391 at 4581.745 kb on + strand, within MPMX20_04391 at 4581.746 kb on + strand, within MPMX20_04391 at 4581.754 kb on - strand, within MPMX20_04391 at 4581.758 kb on + strand, within MPMX20_04391 at 4581.759 kb on + strand, within MPMX20_04391 at 4581.766 kb on - strand, within MPMX20_04391 at 4581.787 kb on + strand, within MPMX20_04391 at 4581.787 kb on + strand, within MPMX20_04391 at 4581.787 kb on + strand, within MPMX20_04391 at 4581.787 kb on + strand, within MPMX20_04391 at 4581.789 kb on - strand, within MPMX20_04391 at 4581.795 kb on - strand, within MPMX20_04391 at 4581.795 kb on - strand, within MPMX20_04391 at 4581.795 kb on - strand, within MPMX20_04391 at 4581.811 kb on + strand, within MPMX20_04391 at 4581.811 kb on - strand, within MPMX20_04391 at 4581.884 kb on + strand, within MPMX20_04391 at 4581.884 kb on + strand, within MPMX20_04391 at 4581.884 kb on + strand, within MPMX20_04391 at 4581.884 kb on + strand, within MPMX20_04391 at 4581.889 kb on + strand, within MPMX20_04391 at 4581.889 kb on + strand, within MPMX20_04391 at 4581.892 kb on - strand, within MPMX20_04391 at 4581.892 kb on - strand, within MPMX20_04391 at 4581.892 kb on - strand, within MPMX20_04391 at 4581.897 kb on - strand, within MPMX20_04391 at 4581.899 kb on + strand, within MPMX20_04391 at 4581.937 kb on - strand, within MPMX20_04391 at 4581.942 kb on + strand, within MPMX20_04391 at 4581.951 kb on + strand, within MPMX20_04391 at 4581.951 kb on + strand, within MPMX20_04391 at 4581.970 kb on - strand, within MPMX20_04391 at 4581.971 kb on - strand, within MPMX20_04391 at 4581.996 kb on + strand, within MPMX20_04391 at 4582.011 kb on - strand, within MPMX20_04391 at 4582.011 kb on - strand, within MPMX20_04391 at 4582.103 kb on + strand, within MPMX20_04391 at 4582.103 kb on + strand, within MPMX20_04391 at 4582.106 kb on - strand, within MPMX20_04391 at 4582.108 kb on + strand, within MPMX20_04391 at 4582.108 kb on + strand, within MPMX20_04391 at 4582.111 kb on - strand, within MPMX20_04391 at 4582.113 kb on + strand, within MPMX20_04391 at 4582.113 kb on + strand, within MPMX20_04391 at 4582.113 kb on + strand, within MPMX20_04391 at 4582.116 kb on - strand, within MPMX20_04391 at 4582.123 kb on + strand, within MPMX20_04391 at 4582.131 kb on - strand, within MPMX20_04391 at 4582.131 kb on - strand, within MPMX20_04391 at 4582.131 kb on - strand, within MPMX20_04391 at 4582.154 kb on + strand, within MPMX20_04391 at 4582.234 kb on - strand at 4582.242 kb on - strand at 4582.266 kb on + strand at 4582.284 kb on + strand at 4582.321 kb on - strand at 4582.352 kb on + strand at 4582.354 kb on + strand at 4582.360 kb on - strand at 4582.403 kb on + strand at 4582.418 kb on - strand at 4582.461 kb on - strand, within MPMX20_04392 at 4582.465 kb on - strand, within MPMX20_04392 at 4582.491 kb on - strand, within MPMX20_04392 at 4582.540 kb on + strand, within MPMX20_04392 at 4582.568 kb on - strand, within MPMX20_04392 at 4582.638 kb on - strand, within MPMX20_04392 at 4582.661 kb on + strand, within MPMX20_04392 at 4582.669 kb on - strand, within MPMX20_04392 at 4582.751 kb on - strand, within MPMX20_04392 at 4582.867 kb on - strand, within MPMX20_04392 at 4582.869 kb on + strand, within MPMX20_04392 at 4582.874 kb on - strand, within MPMX20_04392 at 4582.902 kb on + strand, within MPMX20_04392 at 4582.923 kb on + strand, within MPMX20_04392 at 4582.931 kb on - strand, within MPMX20_04392 at 4582.931 kb on - strand, within MPMX20_04392 at 4582.956 kb on - strand, within MPMX20_04392 at 4583.008 kb on - strand, within MPMX20_04392 at 4583.016 kb on - strand, within MPMX20_04392 at 4583.021 kb on - strand, within MPMX20_04392 at 4583.035 kb on + strand, within MPMX20_04392 at 4583.043 kb on - strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.094 kb on + strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.102 kb on - strand, within MPMX20_04392 at 4583.107 kb on - strand, within MPMX20_04392 at 4583.208 kb on + strand, within MPMX20_04392 at 4583.266 kb on + strand, within MPMX20_04392 at 4583.379 kb on + strand, within MPMX20_04392 at 4583.423 kb on - strand, within MPMX20_04392 at 4583.477 kb on - strand at 4583.502 kb on + strand at 4583.510 kb on - strand at 4583.510 kb on - strand at 4583.567 kb on + strand at 4583.567 kb on + strand at 4583.575 kb on - strand at 4583.580 kb on - strand at 4583.699 kb on + strand at 4583.716 kb on + strand at 4583.716 kb on + strand at 4583.724 kb on - strand at 4583.724 kb on - strand at 4583.810 kb on - strand at 4583.819 kb on + strand at 4583.960 kb on - strand, within MPMX20_04393 at 4584.013 kb on + strand, within MPMX20_04393 at 4584.030 kb on + strand, within MPMX20_04393 at 4584.048 kb on - strand, within MPMX20_04393 at 4584.191 kb on - strand, within MPMX20_04393 at 4584.251 kb on - strand, within MPMX20_04393 at 4584.444 kb on - strand, within MPMX20_04393 at 4584.445 kb on + strand, within MPMX20_04393 at 4584.536 kb on + strand, within MPMX20_04393 at 4584.585 kb on - strand, within MPMX20_04393 at 4584.585 kb on - strand, within MPMX20_04393
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 4,581,377 - +0.6 4,581,396 + -2.8 4,581,421 + +2.3 4,581,421 + -1.3 4,581,429 - +1.5 4,581,484 - MPMX20_04391 0.14 +0.5 4,581,485 + MPMX20_04391 0.14 +0.7 4,581,485 + MPMX20_04391 0.14 +0.6 4,581,493 - MPMX20_04391 0.15 -2.5 4,581,493 - MPMX20_04391 0.15 -0.1 4,581,524 - MPMX20_04391 0.18 -3.6 4,581,605 - MPMX20_04391 0.27 -3.0 4,581,605 - MPMX20_04391 0.27 +0.0 4,581,605 - MPMX20_04391 0.27 -0.0 4,581,607 - MPMX20_04391 0.27 +1.3 4,581,647 - MPMX20_04391 0.32 -1.7 4,581,687 + MPMX20_04391 0.36 -2.4 4,581,745 + MPMX20_04391 0.42 +0.0 4,581,746 + MPMX20_04391 0.42 +0.3 4,581,754 - MPMX20_04391 0.43 +0.0 4,581,758 + MPMX20_04391 0.43 +2.8 4,581,759 + MPMX20_04391 0.43 -2.2 4,581,766 - MPMX20_04391 0.44 -2.8 4,581,787 + MPMX20_04391 0.46 -1.0 4,581,787 + MPMX20_04391 0.46 -2.0 4,581,787 + MPMX20_04391 0.46 +1.6 4,581,787 + MPMX20_04391 0.46 +0.5 4,581,789 - MPMX20_04391 0.47 +1.3 4,581,795 - MPMX20_04391 0.47 -1.0 4,581,795 - MPMX20_04391 0.47 +0.5 4,581,795 - MPMX20_04391 0.47 +0.3 4,581,811 + MPMX20_04391 0.49 -0.3 4,581,811 - MPMX20_04391 0.49 +0.0 4,581,884 + MPMX20_04391 0.57 -2.5 4,581,884 + MPMX20_04391 0.57 +0.6 4,581,884 + MPMX20_04391 0.57 -1.2 4,581,884 + MPMX20_04391 0.57 +2.4 4,581,889 + MPMX20_04391 0.57 +1.8 4,581,889 + MPMX20_04391 0.57 -3.0 4,581,892 - MPMX20_04391 0.58 -0.4 4,581,892 - MPMX20_04391 0.58 -1.4 4,581,892 - MPMX20_04391 0.58 -0.2 4,581,897 - MPMX20_04391 0.58 +1.7 4,581,899 + MPMX20_04391 0.58 +2.4 4,581,937 - MPMX20_04391 0.62 +0.1 4,581,942 + MPMX20_04391 0.63 -0.6 4,581,951 + MPMX20_04391 0.64 +0.9 4,581,951 + MPMX20_04391 0.64 +5.5 4,581,970 - MPMX20_04391 0.66 -0.9 4,581,971 - MPMX20_04391 0.66 -1.3 4,581,996 + MPMX20_04391 0.69 +0.3 4,582,011 - MPMX20_04391 0.70 +1.3 4,582,011 - MPMX20_04391 0.70 -0.5 4,582,103 + MPMX20_04391 0.80 -0.2 4,582,103 + MPMX20_04391 0.80 -0.1 4,582,106 - MPMX20_04391 0.80 -1.8 4,582,108 + MPMX20_04391 0.81 -2.8 4,582,108 + MPMX20_04391 0.81 -2.5 4,582,111 - MPMX20_04391 0.81 -0.3 4,582,113 + MPMX20_04391 0.81 -1.3 4,582,113 + MPMX20_04391 0.81 -1.2 4,582,113 + MPMX20_04391 0.81 +0.8 4,582,116 - MPMX20_04391 0.81 -2.2 4,582,123 + MPMX20_04391 0.82 -1.1 4,582,131 - MPMX20_04391 0.83 -1.0 4,582,131 - MPMX20_04391 0.83 -2.7 4,582,131 - MPMX20_04391 0.83 +0.0 4,582,154 + MPMX20_04391 0.86 -0.2 4,582,234 - +1.3 4,582,242 - +1.3 4,582,266 + -2.4 4,582,284 + -0.5 4,582,321 - +0.5 4,582,352 + -0.2 4,582,354 + +0.2 4,582,360 - +0.2 4,582,403 + -0.9 4,582,418 - -0.2 4,582,461 - MPMX20_04392 0.11 +0.8 4,582,465 - MPMX20_04392 0.11 -2.1 4,582,491 - MPMX20_04392 0.13 -2.3 4,582,540 + MPMX20_04392 0.17 -2.1 4,582,568 - MPMX20_04392 0.19 -0.2 4,582,638 - MPMX20_04392 0.25 -1.7 4,582,661 + MPMX20_04392 0.26 +0.0 4,582,669 - MPMX20_04392 0.27 -0.5 4,582,751 - MPMX20_04392 0.33 +4.1 4,582,867 - MPMX20_04392 0.43 +0.6 4,582,869 + MPMX20_04392 0.43 +0.3 4,582,874 - MPMX20_04392 0.43 +0.3 4,582,902 + MPMX20_04392 0.45 -0.3 4,582,923 + MPMX20_04392 0.47 -0.5 4,582,931 - MPMX20_04392 0.48 +1.6 4,582,931 - MPMX20_04392 0.48 -1.2 4,582,956 - MPMX20_04392 0.49 +0.5 4,583,008 - MPMX20_04392 0.54 +0.5 4,583,016 - MPMX20_04392 0.54 -0.5 4,583,021 - MPMX20_04392 0.55 -1.7 4,583,035 + MPMX20_04392 0.56 +0.9 4,583,043 - MPMX20_04392 0.56 +0.8 4,583,094 + MPMX20_04392 0.60 -0.1 4,583,094 + MPMX20_04392 0.60 -2.7 4,583,094 + MPMX20_04392 0.60 +1.3 4,583,094 + MPMX20_04392 0.60 +3.1 4,583,094 + MPMX20_04392 0.60 +0.2 4,583,102 - MPMX20_04392 0.61 +1.5 4,583,102 - MPMX20_04392 0.61 -0.6 4,583,102 - MPMX20_04392 0.61 -0.3 4,583,102 - MPMX20_04392 0.61 -0.5 4,583,107 - MPMX20_04392 0.61 +6.1 4,583,208 + MPMX20_04392 0.69 -2.2 4,583,266 + MPMX20_04392 0.74 +0.9 4,583,379 + MPMX20_04392 0.83 -2.0 4,583,423 - MPMX20_04392 0.86 +0.5 4,583,477 - +0.8 4,583,502 + -0.0 4,583,510 - -1.1 4,583,510 - -0.9 4,583,567 + -0.3 4,583,567 + +0.8 4,583,575 - +0.8 4,583,580 - +1.8 4,583,699 + +1.3 4,583,716 + -1.3 4,583,716 + -0.6 4,583,724 - +0.0 4,583,724 - +0.3 4,583,810 - +1.8 4,583,819 + -1.0 4,583,960 - MPMX20_04393 0.14 -0.3 4,584,013 + MPMX20_04393 0.18 -1.5 4,584,030 + MPMX20_04393 0.19 +0.3 4,584,048 - MPMX20_04393 0.20 +1.3 4,584,191 - MPMX20_04393 0.30 +0.8 4,584,251 - MPMX20_04393 0.34 -0.3 4,584,444 - MPMX20_04393 0.46 -0.9 4,584,445 + MPMX20_04393 0.46 +1.2 4,584,536 + MPMX20_04393 0.53 -0.3 4,584,585 - MPMX20_04393 0.56 -0.6 4,584,585 - MPMX20_04393 0.56 -1.1
Or see this region's nucleotide sequence