Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04366

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04364 and MPMX20_04365 are separated by 3 nucleotidesMPMX20_04365 and MPMX20_04366 overlap by 4 nucleotidesMPMX20_04366 and MPMX20_04367 overlap by 32 nucleotides MPMX20_04364: MPMX20_04364 - hypothetical protein, at 4,555,209 to 4,556,900 _04364 MPMX20_04365: MPMX20_04365 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 4,556,904 to 4,557,326 _04365 MPMX20_04366: MPMX20_04366 - Outer-membrane lipoprotein carrier protein, at 4,557,323 to 4,557,928 _04366 MPMX20_04367: MPMX20_04367 - hypothetical protein, at 4,557,897 to 4,560,221 _04367 Position (kb) 4557 4558Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4556.339 kb on - strand, within MPMX20_04364at 4556.343 kb on + strand, within MPMX20_04364at 4556.399 kb on + strand, within MPMX20_04364at 4556.430 kb on - strand, within MPMX20_04364at 4556.430 kb on - strand, within MPMX20_04364at 4556.430 kb on - strand, within MPMX20_04364at 4556.432 kb on + strand, within MPMX20_04364at 4556.466 kb on + strand, within MPMX20_04364at 4556.494 kb on - strand, within MPMX20_04364at 4556.530 kb on - strand, within MPMX20_04364at 4556.539 kb on - strand, within MPMX20_04364at 4556.659 kb on + strand, within MPMX20_04364at 4556.669 kb on + strand, within MPMX20_04364at 4556.674 kb on + strand, within MPMX20_04364at 4556.682 kb on - strand, within MPMX20_04364at 4556.682 kb on - strand, within MPMX20_04364at 4556.699 kb on + strand, within MPMX20_04364at 4556.704 kb on + strand, within MPMX20_04364at 4556.803 kb on + strandat 4556.808 kb on - strandat 4556.811 kb on - strandat 4556.826 kb on + strandat 4556.834 kb on - strandat 4556.894 kb on + strandat 4556.903 kb on - strandat 4556.904 kb on - strandat 4556.904 kb on - strandat 4557.057 kb on - strand, within MPMX20_04365at 4557.072 kb on + strand, within MPMX20_04365at 4557.072 kb on + strand, within MPMX20_04365at 4557.084 kb on - strand, within MPMX20_04365at 4557.124 kb on + strand, within MPMX20_04365at 4557.124 kb on + strand, within MPMX20_04365at 4557.124 kb on + strand, within MPMX20_04365at 4557.124 kb on + strand, within MPMX20_04365at 4557.132 kb on - strand, within MPMX20_04365at 4557.132 kb on - strand, within MPMX20_04365at 4557.132 kb on - strand, within MPMX20_04365at 4557.132 kb on - strand, within MPMX20_04365at 4557.132 kb on - strand, within MPMX20_04365at 4557.132 kb on - strand, within MPMX20_04365at 4557.316 kb on - strandat 4557.338 kb on + strandat 4557.338 kb on + strandat 4557.372 kb on - strandat 4557.661 kb on + strand, within MPMX20_04366at 4557.661 kb on + strand, within MPMX20_04366at 4557.669 kb on - strand, within MPMX20_04366at 4557.669 kb on - strand, within MPMX20_04366at 4557.669 kb on - strand, within MPMX20_04366at 4557.669 kb on - strand, within MPMX20_04366at 4557.669 kb on - strand, within MPMX20_04366at 4557.783 kb on + strand, within MPMX20_04366at 4557.783 kb on + strand, within MPMX20_04366at 4557.923 kb on + strandat 4557.923 kb on + strandat 4557.923 kb on + strandat 4557.942 kb on + strandat 4557.947 kb on + strandat 4557.947 kb on + strandat 4557.955 kb on - strandat 4558.016 kb on - strandat 4558.023 kb on + strandat 4558.081 kb on + strandat 4558.081 kb on + strandat 4558.089 kb on - strandat 4558.089 kb on - strandat 4558.101 kb on - strandat 4558.118 kb on + strandat 4558.126 kb on - strandat 4558.160 kb on - strand, within MPMX20_04367at 4558.199 kb on + strand, within MPMX20_04367at 4558.199 kb on + strand, within MPMX20_04367at 4558.200 kb on + strand, within MPMX20_04367at 4558.232 kb on + strand, within MPMX20_04367at 4558.232 kb on + strand, within MPMX20_04367at 4558.309 kb on + strand, within MPMX20_04367at 4558.403 kb on - strand, within MPMX20_04367at 4558.416 kb on - strand, within MPMX20_04367at 4558.416 kb on - strand, within MPMX20_04367at 4558.433 kb on - strand, within MPMX20_04367at 4558.471 kb on + strand, within MPMX20_04367at 4558.495 kb on + strand, within MPMX20_04367at 4558.495 kb on + strand, within MPMX20_04367at 4558.495 kb on + strand, within MPMX20_04367at 4558.503 kb on - strand, within MPMX20_04367at 4558.503 kb on - strand, within MPMX20_04367at 4558.503 kb on - strand, within MPMX20_04367at 4558.517 kb on + strand, within MPMX20_04367at 4558.517 kb on + strand, within MPMX20_04367at 4558.561 kb on - strand, within MPMX20_04367at 4558.652 kb on - strand, within MPMX20_04367at 4558.683 kb on - strand, within MPMX20_04367at 4558.685 kb on + strand, within MPMX20_04367at 4558.713 kb on - strand, within MPMX20_04367at 4558.720 kb on + strand, within MPMX20_04367at 4558.785 kb on - strand, within MPMX20_04367at 4558.841 kb on + strand, within MPMX20_04367at 4558.893 kb on - strand, within MPMX20_04367at 4558.894 kb on - strand, within MPMX20_04367at 4558.894 kb on - strand, within MPMX20_04367

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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4,556,339 - MPMX20_04364 0.67 -0.1
4,556,343 + MPMX20_04364 0.67 +1.1
4,556,399 + MPMX20_04364 0.70 +0.1
4,556,430 - MPMX20_04364 0.72 +0.1
4,556,430 - MPMX20_04364 0.72 -0.3
4,556,430 - MPMX20_04364 0.72 +0.5
4,556,432 + MPMX20_04364 0.72 +0.3
4,556,466 + MPMX20_04364 0.74 -0.7
4,556,494 - MPMX20_04364 0.76 +0.1
4,556,530 - MPMX20_04364 0.78 +0.2
4,556,539 - MPMX20_04364 0.79 +0.4
4,556,659 + MPMX20_04364 0.86 +0.0
4,556,669 + MPMX20_04364 0.86 +2.8
4,556,674 + MPMX20_04364 0.87 +0.2
4,556,682 - MPMX20_04364 0.87 -3.5
4,556,682 - MPMX20_04364 0.87 -1.5
4,556,699 + MPMX20_04364 0.88 -0.2
4,556,704 + MPMX20_04364 0.88 +0.8
4,556,803 + +1.8
4,556,808 - -1.5
4,556,811 - -2.0
4,556,826 + -0.6
4,556,834 - +1.3
4,556,894 + +1.0
4,556,903 - +0.9
4,556,904 - -2.1
4,556,904 - -1.9
4,557,057 - MPMX20_04365 0.36 -1.5
4,557,072 + MPMX20_04365 0.40 -1.4
4,557,072 + MPMX20_04365 0.40 +0.1
4,557,084 - MPMX20_04365 0.43 -2.2
4,557,124 + MPMX20_04365 0.52 +1.1
4,557,124 + MPMX20_04365 0.52 +0.6
4,557,124 + MPMX20_04365 0.52 -0.9
4,557,124 + MPMX20_04365 0.52 +0.0
4,557,132 - MPMX20_04365 0.54 +2.8
4,557,132 - MPMX20_04365 0.54 -0.8
4,557,132 - MPMX20_04365 0.54 -1.4
4,557,132 - MPMX20_04365 0.54 +1.8
4,557,132 - MPMX20_04365 0.54 +0.8
4,557,132 - MPMX20_04365 0.54 +1.4
4,557,316 - -0.3
4,557,338 + +1.8
4,557,338 + +2.5
4,557,372 - +0.1
4,557,661 + MPMX20_04366 0.56 +1.5
4,557,661 + MPMX20_04366 0.56 +1.6
4,557,669 - MPMX20_04366 0.57 -1.5
4,557,669 - MPMX20_04366 0.57 +3.6
4,557,669 - MPMX20_04366 0.57 -0.9
4,557,669 - MPMX20_04366 0.57 +1.8
4,557,669 - MPMX20_04366 0.57 +1.5
4,557,783 + MPMX20_04366 0.76 +0.3
4,557,783 + MPMX20_04366 0.76 -0.9
4,557,923 + -0.4
4,557,923 + +2.1
4,557,923 + +0.0
4,557,942 + +0.8
4,557,947 + +0.4
4,557,947 + +1.8
4,557,955 - -0.1
4,558,016 - -0.3
4,558,023 + -2.4
4,558,081 + +0.4
4,558,081 + +1.0
4,558,089 - -1.0
4,558,089 - -0.1
4,558,101 - -1.1
4,558,118 + -1.2
4,558,126 - +0.1
4,558,160 - MPMX20_04367 0.11 -0.6
4,558,199 + MPMX20_04367 0.13 -0.8
4,558,199 + MPMX20_04367 0.13 +0.1
4,558,200 + MPMX20_04367 0.13 -0.8
4,558,232 + MPMX20_04367 0.14 -2.3
4,558,232 + MPMX20_04367 0.14 -1.0
4,558,309 + MPMX20_04367 0.18 -2.6
4,558,403 - MPMX20_04367 0.22 -2.7
4,558,416 - MPMX20_04367 0.22 -0.5
4,558,416 - MPMX20_04367 0.22 -0.6
4,558,433 - MPMX20_04367 0.23 -2.6
4,558,471 + MPMX20_04367 0.25 -0.5
4,558,495 + MPMX20_04367 0.26 -3.1
4,558,495 + MPMX20_04367 0.26 +0.2
4,558,495 + MPMX20_04367 0.26 +0.3
4,558,503 - MPMX20_04367 0.26 -3.4
4,558,503 - MPMX20_04367 0.26 -0.6
4,558,503 - MPMX20_04367 0.26 -1.7
4,558,517 + MPMX20_04367 0.27 -0.8
4,558,517 + MPMX20_04367 0.27 +0.7
4,558,561 - MPMX20_04367 0.29 -0.0
4,558,652 - MPMX20_04367 0.32 +1.8
4,558,683 - MPMX20_04367 0.34 -3.9
4,558,685 + MPMX20_04367 0.34 -0.8
4,558,713 - MPMX20_04367 0.35 -2.7
4,558,720 + MPMX20_04367 0.35 +3.8
4,558,785 - MPMX20_04367 0.38 +0.8
4,558,841 + MPMX20_04367 0.41 +2.2
4,558,893 - MPMX20_04367 0.43 -0.8
4,558,894 - MPMX20_04367 0.43 -1.0
4,558,894 - MPMX20_04367 0.43 -1.2

Or see this region's nucleotide sequence