Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04364 and MPMX20_04365 are separated by 3 nucleotides MPMX20_04365 and MPMX20_04366 overlap by 4 nucleotides MPMX20_04366 and MPMX20_04367 overlap by 32 nucleotides
MPMX20_04364: MPMX20_04364 - hypothetical protein, at 4,555,209 to 4,556,900
_04364
MPMX20_04365: MPMX20_04365 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 4,556,904 to 4,557,326
_04365
MPMX20_04366: MPMX20_04366 - Outer-membrane lipoprotein carrier protein, at 4,557,323 to 4,557,928
_04366
MPMX20_04367: MPMX20_04367 - hypothetical protein, at 4,557,897 to 4,560,221
_04367
Position (kb)
4557
4558 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4556.339 kb on - strand, within MPMX20_04364 at 4556.343 kb on + strand, within MPMX20_04364 at 4556.399 kb on + strand, within MPMX20_04364 at 4556.430 kb on - strand, within MPMX20_04364 at 4556.430 kb on - strand, within MPMX20_04364 at 4556.430 kb on - strand, within MPMX20_04364 at 4556.432 kb on + strand, within MPMX20_04364 at 4556.466 kb on + strand, within MPMX20_04364 at 4556.494 kb on - strand, within MPMX20_04364 at 4556.530 kb on - strand, within MPMX20_04364 at 4556.539 kb on - strand, within MPMX20_04364 at 4556.659 kb on + strand, within MPMX20_04364 at 4556.669 kb on + strand, within MPMX20_04364 at 4556.674 kb on + strand, within MPMX20_04364 at 4556.682 kb on - strand, within MPMX20_04364 at 4556.682 kb on - strand, within MPMX20_04364 at 4556.699 kb on + strand, within MPMX20_04364 at 4556.704 kb on + strand, within MPMX20_04364 at 4556.803 kb on + strand at 4556.808 kb on - strand at 4556.811 kb on - strand at 4556.826 kb on + strand at 4556.834 kb on - strand at 4556.894 kb on + strand at 4556.903 kb on - strand at 4556.904 kb on - strand at 4556.904 kb on - strand at 4557.057 kb on - strand, within MPMX20_04365 at 4557.072 kb on + strand, within MPMX20_04365 at 4557.072 kb on + strand, within MPMX20_04365 at 4557.084 kb on - strand, within MPMX20_04365 at 4557.124 kb on + strand, within MPMX20_04365 at 4557.124 kb on + strand, within MPMX20_04365 at 4557.124 kb on + strand, within MPMX20_04365 at 4557.124 kb on + strand, within MPMX20_04365 at 4557.132 kb on - strand, within MPMX20_04365 at 4557.132 kb on - strand, within MPMX20_04365 at 4557.132 kb on - strand, within MPMX20_04365 at 4557.132 kb on - strand, within MPMX20_04365 at 4557.132 kb on - strand, within MPMX20_04365 at 4557.132 kb on - strand, within MPMX20_04365 at 4557.316 kb on - strand at 4557.338 kb on + strand at 4557.338 kb on + strand at 4557.372 kb on - strand at 4557.661 kb on + strand, within MPMX20_04366 at 4557.661 kb on + strand, within MPMX20_04366 at 4557.669 kb on - strand, within MPMX20_04366 at 4557.669 kb on - strand, within MPMX20_04366 at 4557.669 kb on - strand, within MPMX20_04366 at 4557.669 kb on - strand, within MPMX20_04366 at 4557.669 kb on - strand, within MPMX20_04366 at 4557.783 kb on + strand, within MPMX20_04366 at 4557.783 kb on + strand, within MPMX20_04366 at 4557.923 kb on + strand at 4557.923 kb on + strand at 4557.923 kb on + strand at 4557.942 kb on + strand at 4557.947 kb on + strand at 4557.947 kb on + strand at 4557.955 kb on - strand at 4558.016 kb on - strand at 4558.023 kb on + strand at 4558.081 kb on + strand at 4558.081 kb on + strand at 4558.089 kb on - strand at 4558.089 kb on - strand at 4558.101 kb on - strand at 4558.118 kb on + strand at 4558.126 kb on - strand at 4558.160 kb on - strand, within MPMX20_04367 at 4558.199 kb on + strand, within MPMX20_04367 at 4558.199 kb on + strand, within MPMX20_04367 at 4558.200 kb on + strand, within MPMX20_04367 at 4558.232 kb on + strand, within MPMX20_04367 at 4558.232 kb on + strand, within MPMX20_04367 at 4558.309 kb on + strand, within MPMX20_04367 at 4558.403 kb on - strand, within MPMX20_04367 at 4558.416 kb on - strand, within MPMX20_04367 at 4558.416 kb on - strand, within MPMX20_04367 at 4558.433 kb on - strand, within MPMX20_04367 at 4558.471 kb on + strand, within MPMX20_04367 at 4558.495 kb on + strand, within MPMX20_04367 at 4558.495 kb on + strand, within MPMX20_04367 at 4558.495 kb on + strand, within MPMX20_04367 at 4558.503 kb on - strand, within MPMX20_04367 at 4558.503 kb on - strand, within MPMX20_04367 at 4558.503 kb on - strand, within MPMX20_04367 at 4558.517 kb on + strand, within MPMX20_04367 at 4558.517 kb on + strand, within MPMX20_04367 at 4558.561 kb on - strand, within MPMX20_04367 at 4558.652 kb on - strand, within MPMX20_04367 at 4558.683 kb on - strand, within MPMX20_04367 at 4558.685 kb on + strand, within MPMX20_04367 at 4558.713 kb on - strand, within MPMX20_04367 at 4558.720 kb on + strand, within MPMX20_04367 at 4558.785 kb on - strand, within MPMX20_04367 at 4558.841 kb on + strand, within MPMX20_04367 at 4558.893 kb on - strand, within MPMX20_04367 at 4558.894 kb on - strand, within MPMX20_04367 at 4558.894 kb on - strand, within MPMX20_04367
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 4,556,339 - MPMX20_04364 0.67 -0.1 4,556,343 + MPMX20_04364 0.67 +1.1 4,556,399 + MPMX20_04364 0.70 +0.1 4,556,430 - MPMX20_04364 0.72 +0.1 4,556,430 - MPMX20_04364 0.72 -0.3 4,556,430 - MPMX20_04364 0.72 +0.5 4,556,432 + MPMX20_04364 0.72 +0.3 4,556,466 + MPMX20_04364 0.74 -0.7 4,556,494 - MPMX20_04364 0.76 +0.1 4,556,530 - MPMX20_04364 0.78 +0.2 4,556,539 - MPMX20_04364 0.79 +0.4 4,556,659 + MPMX20_04364 0.86 +0.0 4,556,669 + MPMX20_04364 0.86 +2.8 4,556,674 + MPMX20_04364 0.87 +0.2 4,556,682 - MPMX20_04364 0.87 -3.5 4,556,682 - MPMX20_04364 0.87 -1.5 4,556,699 + MPMX20_04364 0.88 -0.2 4,556,704 + MPMX20_04364 0.88 +0.8 4,556,803 + +1.8 4,556,808 - -1.5 4,556,811 - -2.0 4,556,826 + -0.6 4,556,834 - +1.3 4,556,894 + +1.0 4,556,903 - +0.9 4,556,904 - -2.1 4,556,904 - -1.9 4,557,057 - MPMX20_04365 0.36 -1.5 4,557,072 + MPMX20_04365 0.40 -1.4 4,557,072 + MPMX20_04365 0.40 +0.1 4,557,084 - MPMX20_04365 0.43 -2.2 4,557,124 + MPMX20_04365 0.52 +1.1 4,557,124 + MPMX20_04365 0.52 +0.6 4,557,124 + MPMX20_04365 0.52 -0.9 4,557,124 + MPMX20_04365 0.52 +0.0 4,557,132 - MPMX20_04365 0.54 +2.8 4,557,132 - MPMX20_04365 0.54 -0.8 4,557,132 - MPMX20_04365 0.54 -1.4 4,557,132 - MPMX20_04365 0.54 +1.8 4,557,132 - MPMX20_04365 0.54 +0.8 4,557,132 - MPMX20_04365 0.54 +1.4 4,557,316 - -0.3 4,557,338 + +1.8 4,557,338 + +2.5 4,557,372 - +0.1 4,557,661 + MPMX20_04366 0.56 +1.5 4,557,661 + MPMX20_04366 0.56 +1.6 4,557,669 - MPMX20_04366 0.57 -1.5 4,557,669 - MPMX20_04366 0.57 +3.6 4,557,669 - MPMX20_04366 0.57 -0.9 4,557,669 - MPMX20_04366 0.57 +1.8 4,557,669 - MPMX20_04366 0.57 +1.5 4,557,783 + MPMX20_04366 0.76 +0.3 4,557,783 + MPMX20_04366 0.76 -0.9 4,557,923 + -0.4 4,557,923 + +2.1 4,557,923 + +0.0 4,557,942 + +0.8 4,557,947 + +0.4 4,557,947 + +1.8 4,557,955 - -0.1 4,558,016 - -0.3 4,558,023 + -2.4 4,558,081 + +0.4 4,558,081 + +1.0 4,558,089 - -1.0 4,558,089 - -0.1 4,558,101 - -1.1 4,558,118 + -1.2 4,558,126 - +0.1 4,558,160 - MPMX20_04367 0.11 -0.6 4,558,199 + MPMX20_04367 0.13 -0.8 4,558,199 + MPMX20_04367 0.13 +0.1 4,558,200 + MPMX20_04367 0.13 -0.8 4,558,232 + MPMX20_04367 0.14 -2.3 4,558,232 + MPMX20_04367 0.14 -1.0 4,558,309 + MPMX20_04367 0.18 -2.6 4,558,403 - MPMX20_04367 0.22 -2.7 4,558,416 - MPMX20_04367 0.22 -0.5 4,558,416 - MPMX20_04367 0.22 -0.6 4,558,433 - MPMX20_04367 0.23 -2.6 4,558,471 + MPMX20_04367 0.25 -0.5 4,558,495 + MPMX20_04367 0.26 -3.1 4,558,495 + MPMX20_04367 0.26 +0.2 4,558,495 + MPMX20_04367 0.26 +0.3 4,558,503 - MPMX20_04367 0.26 -3.4 4,558,503 - MPMX20_04367 0.26 -0.6 4,558,503 - MPMX20_04367 0.26 -1.7 4,558,517 + MPMX20_04367 0.27 -0.8 4,558,517 + MPMX20_04367 0.27 +0.7 4,558,561 - MPMX20_04367 0.29 -0.0 4,558,652 - MPMX20_04367 0.32 +1.8 4,558,683 - MPMX20_04367 0.34 -3.9 4,558,685 + MPMX20_04367 0.34 -0.8 4,558,713 - MPMX20_04367 0.35 -2.7 4,558,720 + MPMX20_04367 0.35 +3.8 4,558,785 - MPMX20_04367 0.38 +0.8 4,558,841 + MPMX20_04367 0.41 +2.2 4,558,893 - MPMX20_04367 0.43 -0.8 4,558,894 - MPMX20_04367 0.43 -1.0 4,558,894 - MPMX20_04367 0.43 -1.2
Or see this region's nucleotide sequence