Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04281 and MPMX20_04282 are separated by 3 nucleotides MPMX20_04282 and MPMX20_04283 overlap by 4 nucleotides MPMX20_04283 and MPMX20_04284 are separated by 119 nucleotides
MPMX20_04281: MPMX20_04281 - hypothetical protein, at 4,464,186 to 4,464,647
_04281
MPMX20_04282: MPMX20_04282 - hypothetical protein, at 4,464,651 to 4,465,145
_04282
MPMX20_04283: MPMX20_04283 - hypothetical protein, at 4,465,142 to 4,465,918
_04283
MPMX20_04284: MPMX20_04284 - Penicillin-binding protein 1A, at 4,466,038 to 4,468,590
_04284
Position (kb)
4465
4466 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4464.203 kb on + strand at 4464.229 kb on + strand at 4464.229 kb on + strand at 4464.229 kb on + strand at 4464.237 kb on - strand, within MPMX20_04281 at 4464.237 kb on - strand, within MPMX20_04281 at 4464.237 kb on - strand, within MPMX20_04281 at 4464.242 kb on - strand, within MPMX20_04281 at 4464.288 kb on + strand, within MPMX20_04281 at 4464.353 kb on + strand, within MPMX20_04281 at 4464.376 kb on - strand, within MPMX20_04281 at 4464.376 kb on - strand, within MPMX20_04281 at 4464.376 kb on - strand, within MPMX20_04281 at 4464.441 kb on - strand, within MPMX20_04281 at 4464.475 kb on + strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.483 kb on - strand, within MPMX20_04281 at 4464.532 kb on - strand, within MPMX20_04281 at 4464.554 kb on + strand, within MPMX20_04281 at 4464.554 kb on + strand, within MPMX20_04281 at 4464.567 kb on - strand, within MPMX20_04281 at 4464.591 kb on + strand, within MPMX20_04281 at 4464.594 kb on - strand, within MPMX20_04281 at 4464.623 kb on - strand at 4464.649 kb on + strand at 4464.649 kb on + strand at 4464.668 kb on + strand at 4464.676 kb on - strand at 4464.698 kb on - strand at 4464.759 kb on + strand, within MPMX20_04282 at 4464.812 kb on - strand, within MPMX20_04282 at 4464.812 kb on - strand, within MPMX20_04282 at 4464.812 kb on - strand, within MPMX20_04282 at 4464.939 kb on - strand, within MPMX20_04282 at 4464.951 kb on - strand, within MPMX20_04282 at 4464.980 kb on - strand, within MPMX20_04282 at 4465.039 kb on + strand, within MPMX20_04282 at 4465.158 kb on + strand at 4465.158 kb on + strand at 4465.158 kb on + strand at 4465.158 kb on + strand at 4465.166 kb on - strand at 4465.189 kb on - strand at 4465.189 kb on - strand at 4465.233 kb on + strand, within MPMX20_04283 at 4465.268 kb on + strand, within MPMX20_04283 at 4465.276 kb on - strand, within MPMX20_04283 at 4465.413 kb on + strand, within MPMX20_04283 at 4465.413 kb on + strand, within MPMX20_04283 at 4465.413 kb on + strand, within MPMX20_04283 at 4465.438 kb on + strand, within MPMX20_04283 at 4465.446 kb on - strand, within MPMX20_04283 at 4465.473 kb on + strand, within MPMX20_04283 at 4465.481 kb on - strand, within MPMX20_04283 at 4465.516 kb on - strand, within MPMX20_04283 at 4465.516 kb on - strand, within MPMX20_04283 at 4465.614 kb on + strand, within MPMX20_04283 at 4465.713 kb on - strand, within MPMX20_04283 at 4465.794 kb on + strand, within MPMX20_04283 at 4465.804 kb on + strand, within MPMX20_04283 at 4465.858 kb on + strand at 4465.939 kb on - strand at 4465.939 kb on - strand at 4465.947 kb on - strand at 4465.970 kb on + strand at 4465.984 kb on - strand at 4466.035 kb on + strand at 4466.073 kb on + strand at 4466.075 kb on + strand at 4466.081 kb on - strand at 4466.081 kb on - strand at 4466.083 kb on - strand at 4466.085 kb on + strand at 4466.085 kb on + strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.093 kb on - strand at 4466.100 kb on + strand at 4466.100 kb on + strand at 4466.103 kb on - strand at 4466.108 kb on - strand at 4466.108 kb on - strand at 4466.152 kb on - strand at 4466.184 kb on + strand at 4466.184 kb on + strand at 4466.192 kb on - strand at 4466.298 kb on - strand, within MPMX20_04284 at 4466.362 kb on - strand, within MPMX20_04284 at 4466.371 kb on + strand, within MPMX20_04284 at 4466.372 kb on - strand, within MPMX20_04284 at 4466.396 kb on + strand, within MPMX20_04284 at 4466.396 kb on + strand, within MPMX20_04284 at 4466.396 kb on + strand, within MPMX20_04284 at 4466.404 kb on - strand, within MPMX20_04284 at 4466.404 kb on - strand, within MPMX20_04284 at 4466.451 kb on - strand, within MPMX20_04284 at 4466.483 kb on + strand, within MPMX20_04284 at 4466.491 kb on - strand, within MPMX20_04284 at 4466.491 kb on - strand, within MPMX20_04284 at 4466.521 kb on - strand, within MPMX20_04284 at 4466.561 kb on + strand, within MPMX20_04284 at 4466.569 kb on - strand, within MPMX20_04284 at 4466.569 kb on - strand, within MPMX20_04284 at 4466.578 kb on + strand, within MPMX20_04284 at 4466.580 kb on + strand, within MPMX20_04284 at 4466.597 kb on - strand, within MPMX20_04284 at 4466.643 kb on + strand, within MPMX20_04284 at 4466.643 kb on + strand, within MPMX20_04284 at 4466.643 kb on + strand, within MPMX20_04284 at 4466.643 kb on + strand, within MPMX20_04284 at 4466.651 kb on - strand, within MPMX20_04284 at 4466.651 kb on - strand, within MPMX20_04284 at 4466.651 kb on - strand, within MPMX20_04284 at 4466.761 kb on - strand, within MPMX20_04284 at 4466.787 kb on + strand, within MPMX20_04284 at 4466.846 kb on + strand, within MPMX20_04284
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 4,464,203 + +0.7 4,464,229 + +2.6 4,464,229 + +4.0 4,464,229 + -0.5 4,464,237 - MPMX20_04281 0.11 +0.4 4,464,237 - MPMX20_04281 0.11 -0.6 4,464,237 - MPMX20_04281 0.11 -0.2 4,464,242 - MPMX20_04281 0.12 +0.2 4,464,288 + MPMX20_04281 0.22 +1.0 4,464,353 + MPMX20_04281 0.36 +2.5 4,464,376 - MPMX20_04281 0.41 +1.3 4,464,376 - MPMX20_04281 0.41 -1.0 4,464,376 - MPMX20_04281 0.41 +0.3 4,464,441 - MPMX20_04281 0.55 -2.3 4,464,475 + MPMX20_04281 0.63 -2.5 4,464,483 - MPMX20_04281 0.64 -2.4 4,464,483 - MPMX20_04281 0.64 +0.3 4,464,483 - MPMX20_04281 0.64 +0.8 4,464,483 - MPMX20_04281 0.64 +2.5 4,464,532 - MPMX20_04281 0.75 -0.9 4,464,554 + MPMX20_04281 0.80 +1.2 4,464,554 + MPMX20_04281 0.80 -0.5 4,464,567 - MPMX20_04281 0.82 +0.4 4,464,591 + MPMX20_04281 0.88 +1.5 4,464,594 - MPMX20_04281 0.88 -0.3 4,464,623 - +1.7 4,464,649 + -1.5 4,464,649 + +1.3 4,464,668 + -0.7 4,464,676 - +1.9 4,464,698 - -0.3 4,464,759 + MPMX20_04282 0.22 +2.8 4,464,812 - MPMX20_04282 0.33 +0.5 4,464,812 - MPMX20_04282 0.33 +0.2 4,464,812 - MPMX20_04282 0.33 -0.8 4,464,939 - MPMX20_04282 0.58 +1.3 4,464,951 - MPMX20_04282 0.61 -0.7 4,464,980 - MPMX20_04282 0.66 -1.3 4,465,039 + MPMX20_04282 0.78 +1.9 4,465,158 + +0.4 4,465,158 + +2.9 4,465,158 + +0.5 4,465,158 + -0.1 4,465,166 - -2.0 4,465,189 - -1.2 4,465,189 - +0.0 4,465,233 + MPMX20_04283 0.12 -1.0 4,465,268 + MPMX20_04283 0.16 +1.8 4,465,276 - MPMX20_04283 0.17 +0.8 4,465,413 + MPMX20_04283 0.35 -2.2 4,465,413 + MPMX20_04283 0.35 +0.3 4,465,413 + MPMX20_04283 0.35 +1.1 4,465,438 + MPMX20_04283 0.38 -2.8 4,465,446 - MPMX20_04283 0.39 +0.8 4,465,473 + MPMX20_04283 0.43 +1.4 4,465,481 - MPMX20_04283 0.44 +0.5 4,465,516 - MPMX20_04283 0.48 +0.1 4,465,516 - MPMX20_04283 0.48 +0.5 4,465,614 + MPMX20_04283 0.61 +2.6 4,465,713 - MPMX20_04283 0.73 +2.3 4,465,794 + MPMX20_04283 0.84 -1.8 4,465,804 + MPMX20_04283 0.85 +0.1 4,465,858 + -0.4 4,465,939 - +0.6 4,465,939 - +1.0 4,465,947 - +0.3 4,465,970 + +1.3 4,465,984 - +1.3 4,466,035 + +1.8 4,466,073 + -0.3 4,466,075 + -0.9 4,466,081 - -0.5 4,466,081 - -0.7 4,466,083 - +0.1 4,466,085 + -0.1 4,466,085 + -0.7 4,466,093 - -0.5 4,466,093 - +1.0 4,466,093 - +1.4 4,466,093 - -0.1 4,466,093 - +0.1 4,466,100 + -0.6 4,466,100 + -2.6 4,466,103 - -0.7 4,466,108 - -2.0 4,466,108 - +0.3 4,466,152 - +3.4 4,466,184 + -3.3 4,466,184 + +0.1 4,466,192 - -0.5 4,466,298 - MPMX20_04284 0.10 -3.3 4,466,362 - MPMX20_04284 0.13 -1.9 4,466,371 + MPMX20_04284 0.13 -1.2 4,466,372 - MPMX20_04284 0.13 -0.6 4,466,396 + MPMX20_04284 0.14 -0.9 4,466,396 + MPMX20_04284 0.14 +5.8 4,466,396 + MPMX20_04284 0.14 +3.1 4,466,404 - MPMX20_04284 0.14 -1.0 4,466,404 - MPMX20_04284 0.14 -1.7 4,466,451 - MPMX20_04284 0.16 -0.1 4,466,483 + MPMX20_04284 0.17 -0.2 4,466,491 - MPMX20_04284 0.18 -0.5 4,466,491 - MPMX20_04284 0.18 +0.5 4,466,521 - MPMX20_04284 0.19 -0.2 4,466,561 + MPMX20_04284 0.20 +0.1 4,466,569 - MPMX20_04284 0.21 -0.6 4,466,569 - MPMX20_04284 0.21 -0.5 4,466,578 + MPMX20_04284 0.21 +0.1 4,466,580 + MPMX20_04284 0.21 +0.9 4,466,597 - MPMX20_04284 0.22 -0.5 4,466,643 + MPMX20_04284 0.24 +0.9 4,466,643 + MPMX20_04284 0.24 -1.1 4,466,643 + MPMX20_04284 0.24 +0.4 4,466,643 + MPMX20_04284 0.24 -1.5 4,466,651 - MPMX20_04284 0.24 -1.0 4,466,651 - MPMX20_04284 0.24 +0.3 4,466,651 - MPMX20_04284 0.24 -0.3 4,466,761 - MPMX20_04284 0.28 +2.0 4,466,787 + MPMX20_04284 0.29 -0.0 4,466,846 + MPMX20_04284 0.32 +0.8
Or see this region's nucleotide sequence