Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04180

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04179 and MPMX20_04180 are separated by 7 nucleotidesMPMX20_04180 and MPMX20_04181 are separated by 106 nucleotidesMPMX20_04181 and MPMX20_04182 are separated by 45 nucleotidesMPMX20_04182 and MPMX20_04183 are separated by 17 nucleotidesMPMX20_04183 and MPMX20_04184 are separated by 67 nucleotides MPMX20_04179: MPMX20_04179 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 4,384,280 to 4,385,383 _04179 MPMX20_04180: MPMX20_04180 - Glutamine transport ATP-binding protein GlnQ, at 4,385,391 to 4,386,149 _04180 MPMX20_04181: MPMX20_04181 - 5S ribosomal RNA, at 4,386,256 to 4,386,366 _04181 MPMX20_04182: MPMX20_04182 - tRNA-Thr, at 4,386,412 to 4,386,487 _04182 MPMX20_04183: MPMX20_04183 - 5S ribosomal RNA, at 4,386,505 to 4,386,615 _04183 MPMX20_04184: MPMX20_04184 - 23S ribosomal RNA, at 4,386,683 to 4,389,585 _04184 Position (kb) 4385 4386 4387Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 4384.433 kb on + strand, within MPMX20_04179at 4384.469 kb on + strand, within MPMX20_04179at 4384.469 kb on + strand, within MPMX20_04179at 4384.496 kb on - strand, within MPMX20_04179at 4384.509 kb on - strand, within MPMX20_04179at 4384.548 kb on + strand, within MPMX20_04179at 4384.557 kb on + strand, within MPMX20_04179at 4384.565 kb on - strand, within MPMX20_04179at 4384.576 kb on + strand, within MPMX20_04179at 4384.581 kb on + strand, within MPMX20_04179at 4384.640 kb on + strand, within MPMX20_04179at 4384.648 kb on - strand, within MPMX20_04179at 4384.648 kb on - strand, within MPMX20_04179at 4384.660 kb on + strand, within MPMX20_04179at 4384.668 kb on - strand, within MPMX20_04179at 4384.680 kb on - strand, within MPMX20_04179at 4384.680 kb on - strand, within MPMX20_04179at 4384.752 kb on + strand, within MPMX20_04179at 4384.752 kb on + strand, within MPMX20_04179at 4384.752 kb on + strand, within MPMX20_04179at 4384.760 kb on - strand, within MPMX20_04179at 4384.760 kb on - strand, within MPMX20_04179at 4384.760 kb on - strand, within MPMX20_04179at 4384.760 kb on - strand, within MPMX20_04179at 4384.760 kb on - strand, within MPMX20_04179at 4384.794 kb on - strand, within MPMX20_04179at 4384.799 kb on + strand, within MPMX20_04179at 4384.821 kb on + strand, within MPMX20_04179at 4384.821 kb on + strand, within MPMX20_04179at 4384.829 kb on - strand, within MPMX20_04179at 4384.890 kb on + strand, within MPMX20_04179at 4384.898 kb on - strand, within MPMX20_04179at 4384.910 kb on + strand, within MPMX20_04179at 4384.912 kb on + strand, within MPMX20_04179at 4384.939 kb on + strand, within MPMX20_04179at 4384.947 kb on - strand, within MPMX20_04179at 4384.992 kb on - strand, within MPMX20_04179at 4384.992 kb on - strand, within MPMX20_04179at 4385.036 kb on + strand, within MPMX20_04179at 4385.047 kb on - strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.050 kb on + strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.058 kb on - strand, within MPMX20_04179at 4385.093 kb on - strand, within MPMX20_04179at 4385.138 kb on - strand, within MPMX20_04179at 4385.155 kb on + strand, within MPMX20_04179at 4385.163 kb on - strand, within MPMX20_04179at 4385.166 kb on + strand, within MPMX20_04179at 4385.174 kb on - strand, within MPMX20_04179at 4385.183 kb on + strand, within MPMX20_04179at 4385.198 kb on - strand, within MPMX20_04179at 4385.202 kb on + strand, within MPMX20_04179at 4385.219 kb on + strand, within MPMX20_04179at 4385.219 kb on + strand, within MPMX20_04179at 4385.221 kb on + strand, within MPMX20_04179at 4385.229 kb on + strand, within MPMX20_04179at 4385.229 kb on - strand, within MPMX20_04179at 4385.253 kb on - strand, within MPMX20_04179at 4385.263 kb on + strand, within MPMX20_04179at 4385.264 kb on + strand, within MPMX20_04179at 4385.367 kb on + strandat 4385.367 kb on + strandat 4385.499 kb on - strand, within MPMX20_04180at 4385.499 kb on - strand, within MPMX20_04180at 4385.558 kb on - strand, within MPMX20_04180at 4385.568 kb on - strand, within MPMX20_04180at 4385.568 kb on - strand, within MPMX20_04180at 4385.568 kb on - strand, within MPMX20_04180at 4385.578 kb on - strand, within MPMX20_04180at 4385.588 kb on - strand, within MPMX20_04180at 4385.616 kb on - strand, within MPMX20_04180at 4385.646 kb on - strand, within MPMX20_04180at 4385.685 kb on - strand, within MPMX20_04180at 4385.706 kb on + strand, within MPMX20_04180at 4385.714 kb on - strand, within MPMX20_04180at 4385.714 kb on - strand, within MPMX20_04180at 4385.719 kb on - strand, within MPMX20_04180at 4385.772 kb on + strand, within MPMX20_04180at 4385.782 kb on + strand, within MPMX20_04180at 4385.782 kb on + strand, within MPMX20_04180at 4385.797 kb on + strand, within MPMX20_04180at 4385.831 kb on + strand, within MPMX20_04180at 4385.850 kb on - strand, within MPMX20_04180at 4385.886 kb on - strand, within MPMX20_04180at 4385.909 kb on + strand, within MPMX20_04180at 4385.917 kb on - strand, within MPMX20_04180at 4385.924 kb on + strand, within MPMX20_04180at 4385.985 kb on + strand, within MPMX20_04180at 4386.089 kb on + strandat 4386.109 kb on - strandat 4386.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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4,384,433 + MPMX20_04179 0.14 -0.8
4,384,469 + MPMX20_04179 0.17 +1.3
4,384,469 + MPMX20_04179 0.17 +0.6
4,384,496 - MPMX20_04179 0.20 +0.0
4,384,509 - MPMX20_04179 0.21 -1.6
4,384,548 + MPMX20_04179 0.24 +2.2
4,384,557 + MPMX20_04179 0.25 -0.1
4,384,565 - MPMX20_04179 0.26 -2.2
4,384,576 + MPMX20_04179 0.27 +1.8
4,384,581 + MPMX20_04179 0.27 +0.3
4,384,640 + MPMX20_04179 0.33 -0.2
4,384,648 - MPMX20_04179 0.33 +2.4
4,384,648 - MPMX20_04179 0.33 +0.1
4,384,660 + MPMX20_04179 0.34 -0.3
4,384,668 - MPMX20_04179 0.35 -0.4
4,384,680 - MPMX20_04179 0.36 -0.7
4,384,680 - MPMX20_04179 0.36 +0.5
4,384,752 + MPMX20_04179 0.43 -0.3
4,384,752 + MPMX20_04179 0.43 -0.4
4,384,752 + MPMX20_04179 0.43 -0.7
4,384,760 - MPMX20_04179 0.43 +1.3
4,384,760 - MPMX20_04179 0.43 -2.9
4,384,760 - MPMX20_04179 0.43 +0.1
4,384,760 - MPMX20_04179 0.43 +0.0
4,384,760 - MPMX20_04179 0.43 +0.4
4,384,794 - MPMX20_04179 0.47 +1.3
4,384,799 + MPMX20_04179 0.47 +0.0
4,384,821 + MPMX20_04179 0.49 -2.8
4,384,821 + MPMX20_04179 0.49 +1.1
4,384,829 - MPMX20_04179 0.50 -3.2
4,384,890 + MPMX20_04179 0.55 +0.6
4,384,898 - MPMX20_04179 0.56 -1.5
4,384,910 + MPMX20_04179 0.57 -1.0
4,384,912 + MPMX20_04179 0.57 +1.8
4,384,939 + MPMX20_04179 0.60 -0.9
4,384,947 - MPMX20_04179 0.60 -1.0
4,384,992 - MPMX20_04179 0.64 -2.0
4,384,992 - MPMX20_04179 0.64 +3.1
4,385,036 + MPMX20_04179 0.68 -0.9
4,385,047 - MPMX20_04179 0.69 -2.3
4,385,050 + MPMX20_04179 0.70 +0.3
4,385,050 + MPMX20_04179 0.70 -1.4
4,385,050 + MPMX20_04179 0.70 +0.4
4,385,050 + MPMX20_04179 0.70 +0.5
4,385,050 + MPMX20_04179 0.70 -2.1
4,385,050 + MPMX20_04179 0.70 +0.1
4,385,050 + MPMX20_04179 0.70 -0.4
4,385,058 - MPMX20_04179 0.70 +2.7
4,385,058 - MPMX20_04179 0.70 -0.1
4,385,058 - MPMX20_04179 0.70 -0.1
4,385,058 - MPMX20_04179 0.70 -0.1
4,385,058 - MPMX20_04179 0.70 -1.0
4,385,058 - MPMX20_04179 0.70 -3.1
4,385,058 - MPMX20_04179 0.70 -2.2
4,385,093 - MPMX20_04179 0.74 -0.4
4,385,138 - MPMX20_04179 0.78 -2.0
4,385,155 + MPMX20_04179 0.79 -1.7
4,385,163 - MPMX20_04179 0.80 -2.2
4,385,166 + MPMX20_04179 0.80 -1.1
4,385,174 - MPMX20_04179 0.81 -1.0
4,385,183 + MPMX20_04179 0.82 -0.4
4,385,198 - MPMX20_04179 0.83 +3.2
4,385,202 + MPMX20_04179 0.84 -0.1
4,385,219 + MPMX20_04179 0.85 +0.3
4,385,219 + MPMX20_04179 0.85 +0.3
4,385,221 + MPMX20_04179 0.85 +1.6
4,385,229 + MPMX20_04179 0.86 +1.8
4,385,229 - MPMX20_04179 0.86 -1.2
4,385,253 - MPMX20_04179 0.88 -1.1
4,385,263 + MPMX20_04179 0.89 -1.2
4,385,264 + MPMX20_04179 0.89 -0.0
4,385,367 + -1.3
4,385,367 + +1.6
4,385,499 - MPMX20_04180 0.14 -0.9
4,385,499 - MPMX20_04180 0.14 -0.3
4,385,558 - MPMX20_04180 0.22 +0.7
4,385,568 - MPMX20_04180 0.23 -1.3
4,385,568 - MPMX20_04180 0.23 -0.5
4,385,568 - MPMX20_04180 0.23 +1.0
4,385,578 - MPMX20_04180 0.25 -0.8
4,385,588 - MPMX20_04180 0.26 +0.3
4,385,616 - MPMX20_04180 0.30 +0.4
4,385,646 - MPMX20_04180 0.34 -4.2
4,385,685 - MPMX20_04180 0.39 +0.6
4,385,706 + MPMX20_04180 0.42 -0.6
4,385,714 - MPMX20_04180 0.43 -0.7
4,385,714 - MPMX20_04180 0.43 +0.9
4,385,719 - MPMX20_04180 0.43 -0.3
4,385,772 + MPMX20_04180 0.50 -2.3
4,385,782 + MPMX20_04180 0.52 +2.9
4,385,782 + MPMX20_04180 0.52 +1.6
4,385,797 + MPMX20_04180 0.53 -2.6
4,385,831 + MPMX20_04180 0.58 -1.3
4,385,850 - MPMX20_04180 0.60 -1.3
4,385,886 - MPMX20_04180 0.65 +0.2
4,385,909 + MPMX20_04180 0.68 -0.5
4,385,917 - MPMX20_04180 0.69 +1.1
4,385,924 + MPMX20_04180 0.70 +0.9
4,385,985 + MPMX20_04180 0.78 +7.4
4,386,089 + -0.7
4,386,109 - -1.4
4,386,162 - -0.5

Or see this region's nucleotide sequence