Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04011

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04008 and MPMX20_04009 overlap by 4 nucleotidesMPMX20_04009 and MPMX20_04010 are separated by 209 nucleotidesMPMX20_04010 and MPMX20_04011 are separated by 72 nucleotidesMPMX20_04011 and MPMX20_04012 are separated by 106 nucleotidesMPMX20_04012 and MPMX20_04013 are separated by 40 nucleotides MPMX20_04008: MPMX20_04008 - Inner membrane protein YqjE, at 4,205,408 to 4,205,806 _04008 MPMX20_04009: MPMX20_04009 - hypothetical protein, at 4,205,803 to 4,206,099 _04009 MPMX20_04010: MPMX20_04010 - Inner membrane protein YqjF, at 4,206,309 to 4,206,701 _04010 MPMX20_04011: MPMX20_04011 - Glutathionyl-hydroquinone reductase YqjG, at 4,206,774 to 4,207,760 _04011 MPMX20_04012: MPMX20_04012 - Inner membrane protein YhaH, at 4,207,867 to 4,208,232 _04012 MPMX20_04013: MPMX20_04013 - HTH-type transcriptional regulator YhaJ, at 4,208,273 to 4,209,175 _04013 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 4205.793 kb on - strandat 4205.793 kb on - strandat 4205.816 kb on - strandat 4205.905 kb on - strand, within MPMX20_04009at 4205.927 kb on + strand, within MPMX20_04009at 4205.939 kb on + strand, within MPMX20_04009at 4205.954 kb on + strand, within MPMX20_04009at 4205.954 kb on + strand, within MPMX20_04009at 4205.973 kb on - strand, within MPMX20_04009at 4205.975 kb on + strand, within MPMX20_04009at 4206.129 kb on - strandat 4206.443 kb on - strand, within MPMX20_04010at 4206.522 kb on + strand, within MPMX20_04010at 4206.527 kb on + strand, within MPMX20_04010at 4206.537 kb on + strand, within MPMX20_04010at 4206.541 kb on + strand, within MPMX20_04010at 4206.545 kb on - strand, within MPMX20_04010at 4206.585 kb on + strand, within MPMX20_04010at 4206.593 kb on - strand, within MPMX20_04010at 4206.631 kb on + strand, within MPMX20_04010at 4206.644 kb on + strand, within MPMX20_04010at 4206.654 kb on + strand, within MPMX20_04010at 4206.655 kb on + strand, within MPMX20_04010at 4206.704 kb on + strandat 4206.717 kb on - strandat 4206.964 kb on - strand, within MPMX20_04011at 4206.967 kb on - strand, within MPMX20_04011at 4207.002 kb on - strand, within MPMX20_04011at 4207.031 kb on + strand, within MPMX20_04011at 4207.134 kb on - strand, within MPMX20_04011at 4207.143 kb on + strand, within MPMX20_04011at 4207.238 kb on + strand, within MPMX20_04011at 4207.246 kb on - strand, within MPMX20_04011at 4207.246 kb on - strand, within MPMX20_04011at 4207.246 kb on - strand, within MPMX20_04011at 4207.246 kb on - strand, within MPMX20_04011at 4207.283 kb on - strand, within MPMX20_04011at 4207.348 kb on - strand, within MPMX20_04011at 4207.386 kb on + strand, within MPMX20_04011at 4207.386 kb on + strand, within MPMX20_04011at 4207.394 kb on - strand, within MPMX20_04011at 4207.394 kb on - strand, within MPMX20_04011at 4207.394 kb on - strand, within MPMX20_04011at 4207.429 kb on + strand, within MPMX20_04011at 4207.429 kb on + strand, within MPMX20_04011at 4207.468 kb on + strand, within MPMX20_04011at 4207.519 kb on - strand, within MPMX20_04011at 4207.525 kb on - strand, within MPMX20_04011at 4207.527 kb on - strand, within MPMX20_04011at 4207.541 kb on + strand, within MPMX20_04011at 4207.541 kb on + strand, within MPMX20_04011at 4207.549 kb on - strand, within MPMX20_04011at 4207.549 kb on - strand, within MPMX20_04011at 4207.575 kb on - strand, within MPMX20_04011at 4207.608 kb on - strand, within MPMX20_04011at 4207.629 kb on - strand, within MPMX20_04011at 4207.677 kb on - strandat 4207.677 kb on - strandat 4207.686 kb on - strandat 4207.719 kb on + strandat 4207.738 kb on + strandat 4207.738 kb on + strandat 4207.738 kb on + strandat 4207.738 kb on + strandat 4207.744 kb on - strandat 4207.746 kb on - strandat 4207.746 kb on - strandat 4207.746 kb on - strandat 4207.746 kb on - strandat 4207.856 kb on - strandat 4207.955 kb on + strand, within MPMX20_04012at 4207.955 kb on + strand, within MPMX20_04012at 4207.958 kb on - strand, within MPMX20_04012at 4207.963 kb on - strand, within MPMX20_04012at 4207.963 kb on - strand, within MPMX20_04012at 4208.008 kb on - strand, within MPMX20_04012at 4208.023 kb on + strand, within MPMX20_04012at 4208.079 kb on + strand, within MPMX20_04012at 4208.087 kb on - strand, within MPMX20_04012at 4208.110 kb on + strand, within MPMX20_04012at 4208.164 kb on + strand, within MPMX20_04012at 4208.172 kb on - strand, within MPMX20_04012at 4208.202 kb on + strandat 4208.330 kb on - strandat 4208.332 kb on + strandat 4208.340 kb on - strandat 4208.340 kb on - strandat 4208.356 kb on + strandat 4208.378 kb on + strand, within MPMX20_04013at 4208.378 kb on + strand, within MPMX20_04013at 4208.378 kb on + strand, within MPMX20_04013at 4208.383 kb on + strand, within MPMX20_04013at 4208.383 kb on + strand, within MPMX20_04013at 4208.386 kb on - strand, within MPMX20_04013at 4208.391 kb on - strand, within MPMX20_04013at 4208.391 kb on - strand, within MPMX20_04013at 4208.455 kb on + strand, within MPMX20_04013at 4208.464 kb on - strand, within MPMX20_04013at 4208.464 kb on - strand, within MPMX20_04013at 4208.464 kb on - strand, within MPMX20_04013at 4208.504 kb on + strand, within MPMX20_04013at 4208.652 kb on + strand, within MPMX20_04013at 4208.670 kb on + strand, within MPMX20_04013at 4208.678 kb on - strand, within MPMX20_04013

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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4,205,793 - +0.6
4,205,793 - -2.0
4,205,816 - +1.1
4,205,905 - MPMX20_04009 0.34 -0.5
4,205,927 + MPMX20_04009 0.42 +1.9
4,205,939 + MPMX20_04009 0.46 -1.0
4,205,954 + MPMX20_04009 0.51 +1.0
4,205,954 + MPMX20_04009 0.51 -1.2
4,205,973 - MPMX20_04009 0.57 +1.5
4,205,975 + MPMX20_04009 0.58 +1.2
4,206,129 - +1.9
4,206,443 - MPMX20_04010 0.34 -0.6
4,206,522 + MPMX20_04010 0.54 -0.1
4,206,527 + MPMX20_04010 0.55 -1.2
4,206,537 + MPMX20_04010 0.58 -0.3
4,206,541 + MPMX20_04010 0.59 +0.5
4,206,545 - MPMX20_04010 0.60 -2.8
4,206,585 + MPMX20_04010 0.70 +1.7
4,206,593 - MPMX20_04010 0.72 +1.2
4,206,631 + MPMX20_04010 0.82 -0.7
4,206,644 + MPMX20_04010 0.85 -0.8
4,206,654 + MPMX20_04010 0.88 -0.9
4,206,655 + MPMX20_04010 0.88 +2.3
4,206,704 + -1.7
4,206,717 - +0.6
4,206,964 - MPMX20_04011 0.19 +0.7
4,206,967 - MPMX20_04011 0.20 +8.8
4,207,002 - MPMX20_04011 0.23 -0.3
4,207,031 + MPMX20_04011 0.26 -1.3
4,207,134 - MPMX20_04011 0.36 -1.1
4,207,143 + MPMX20_04011 0.37 +2.7
4,207,238 + MPMX20_04011 0.47 +0.6
4,207,246 - MPMX20_04011 0.48 -0.1
4,207,246 - MPMX20_04011 0.48 +0.0
4,207,246 - MPMX20_04011 0.48 +0.6
4,207,246 - MPMX20_04011 0.48 -1.6
4,207,283 - MPMX20_04011 0.52 -0.5
4,207,348 - MPMX20_04011 0.58 +0.4
4,207,386 + MPMX20_04011 0.62 -1.3
4,207,386 + MPMX20_04011 0.62 +0.2
4,207,394 - MPMX20_04011 0.63 -0.6
4,207,394 - MPMX20_04011 0.63 +1.7
4,207,394 - MPMX20_04011 0.63 +2.4
4,207,429 + MPMX20_04011 0.66 +0.5
4,207,429 + MPMX20_04011 0.66 -2.4
4,207,468 + MPMX20_04011 0.70 -0.1
4,207,519 - MPMX20_04011 0.75 -0.7
4,207,525 - MPMX20_04011 0.76 +0.8
4,207,527 - MPMX20_04011 0.76 +0.9
4,207,541 + MPMX20_04011 0.78 -0.7
4,207,541 + MPMX20_04011 0.78 -0.1
4,207,549 - MPMX20_04011 0.79 +1.2
4,207,549 - MPMX20_04011 0.79 -0.0
4,207,575 - MPMX20_04011 0.81 +0.7
4,207,608 - MPMX20_04011 0.84 -0.7
4,207,629 - MPMX20_04011 0.87 -0.3
4,207,677 - -0.1
4,207,677 - -0.8
4,207,686 - -1.4
4,207,719 + -0.5
4,207,738 + -0.7
4,207,738 + +1.7
4,207,738 + +4.7
4,207,738 + -0.8
4,207,744 - -1.3
4,207,746 - -0.6
4,207,746 - +0.8
4,207,746 - -0.4
4,207,746 - -2.1
4,207,856 - +4.1
4,207,955 + MPMX20_04012 0.24 -0.3
4,207,955 + MPMX20_04012 0.24 -0.2
4,207,958 - MPMX20_04012 0.25 -0.8
4,207,963 - MPMX20_04012 0.26 -0.0
4,207,963 - MPMX20_04012 0.26 -1.5
4,208,008 - MPMX20_04012 0.39 -0.1
4,208,023 + MPMX20_04012 0.43 -3.2
4,208,079 + MPMX20_04012 0.58 -1.7
4,208,087 - MPMX20_04012 0.60 -0.3
4,208,110 + MPMX20_04012 0.66 -0.1
4,208,164 + MPMX20_04012 0.81 +1.8
4,208,172 - MPMX20_04012 0.83 -2.4
4,208,202 + -0.6
4,208,330 - -0.3
4,208,332 + +3.0
4,208,340 - +0.6
4,208,340 - -1.8
4,208,356 + -0.7
4,208,378 + MPMX20_04013 0.12 -0.6
4,208,378 + MPMX20_04013 0.12 -0.3
4,208,378 + MPMX20_04013 0.12 -0.7
4,208,383 + MPMX20_04013 0.12 -1.1
4,208,383 + MPMX20_04013 0.12 -0.3
4,208,386 - MPMX20_04013 0.13 +0.9
4,208,391 - MPMX20_04013 0.13 +1.5
4,208,391 - MPMX20_04013 0.13 -0.2
4,208,455 + MPMX20_04013 0.20 +0.6
4,208,464 - MPMX20_04013 0.21 +0.5
4,208,464 - MPMX20_04013 0.21 -1.5
4,208,464 - MPMX20_04013 0.21 -0.1
4,208,504 + MPMX20_04013 0.26 +0.0
4,208,652 + MPMX20_04013 0.42 -0.2
4,208,670 + MPMX20_04013 0.44 -1.7
4,208,678 - MPMX20_04013 0.45 -0.7

Or see this region's nucleotide sequence