Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04008 and MPMX20_04009 overlap by 4 nucleotides MPMX20_04009 and MPMX20_04010 are separated by 209 nucleotides MPMX20_04010 and MPMX20_04011 are separated by 72 nucleotides MPMX20_04011 and MPMX20_04012 are separated by 106 nucleotides MPMX20_04012 and MPMX20_04013 are separated by 40 nucleotides
MPMX20_04008: MPMX20_04008 - Inner membrane protein YqjE, at 4,205,408 to 4,205,806
_04008
MPMX20_04009: MPMX20_04009 - hypothetical protein, at 4,205,803 to 4,206,099
_04009
MPMX20_04010: MPMX20_04010 - Inner membrane protein YqjF, at 4,206,309 to 4,206,701
_04010
MPMX20_04011: MPMX20_04011 - Glutathionyl-hydroquinone reductase YqjG, at 4,206,774 to 4,207,760
_04011
MPMX20_04012: MPMX20_04012 - Inner membrane protein YhaH, at 4,207,867 to 4,208,232
_04012
MPMX20_04013: MPMX20_04013 - HTH-type transcriptional regulator YhaJ, at 4,208,273 to 4,209,175
_04013
Position (kb)
4206
4207
4208 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 4205.793 kb on - strand at 4205.793 kb on - strand at 4205.816 kb on - strand at 4205.905 kb on - strand, within MPMX20_04009 at 4205.927 kb on + strand, within MPMX20_04009 at 4205.939 kb on + strand, within MPMX20_04009 at 4205.954 kb on + strand, within MPMX20_04009 at 4205.954 kb on + strand, within MPMX20_04009 at 4205.973 kb on - strand, within MPMX20_04009 at 4205.975 kb on + strand, within MPMX20_04009 at 4206.129 kb on - strand at 4206.443 kb on - strand, within MPMX20_04010 at 4206.522 kb on + strand, within MPMX20_04010 at 4206.527 kb on + strand, within MPMX20_04010 at 4206.537 kb on + strand, within MPMX20_04010 at 4206.541 kb on + strand, within MPMX20_04010 at 4206.545 kb on - strand, within MPMX20_04010 at 4206.585 kb on + strand, within MPMX20_04010 at 4206.593 kb on - strand, within MPMX20_04010 at 4206.631 kb on + strand, within MPMX20_04010 at 4206.644 kb on + strand, within MPMX20_04010 at 4206.654 kb on + strand, within MPMX20_04010 at 4206.655 kb on + strand, within MPMX20_04010 at 4206.704 kb on + strand at 4206.717 kb on - strand at 4206.964 kb on - strand, within MPMX20_04011 at 4206.967 kb on - strand, within MPMX20_04011 at 4207.002 kb on - strand, within MPMX20_04011 at 4207.031 kb on + strand, within MPMX20_04011 at 4207.134 kb on - strand, within MPMX20_04011 at 4207.143 kb on + strand, within MPMX20_04011 at 4207.238 kb on + strand, within MPMX20_04011 at 4207.246 kb on - strand, within MPMX20_04011 at 4207.246 kb on - strand, within MPMX20_04011 at 4207.246 kb on - strand, within MPMX20_04011 at 4207.246 kb on - strand, within MPMX20_04011 at 4207.283 kb on - strand, within MPMX20_04011 at 4207.348 kb on - strand, within MPMX20_04011 at 4207.386 kb on + strand, within MPMX20_04011 at 4207.386 kb on + strand, within MPMX20_04011 at 4207.394 kb on - strand, within MPMX20_04011 at 4207.394 kb on - strand, within MPMX20_04011 at 4207.394 kb on - strand, within MPMX20_04011 at 4207.429 kb on + strand, within MPMX20_04011 at 4207.429 kb on + strand, within MPMX20_04011 at 4207.468 kb on + strand, within MPMX20_04011 at 4207.519 kb on - strand, within MPMX20_04011 at 4207.525 kb on - strand, within MPMX20_04011 at 4207.527 kb on - strand, within MPMX20_04011 at 4207.541 kb on + strand, within MPMX20_04011 at 4207.541 kb on + strand, within MPMX20_04011 at 4207.549 kb on - strand, within MPMX20_04011 at 4207.549 kb on - strand, within MPMX20_04011 at 4207.575 kb on - strand, within MPMX20_04011 at 4207.608 kb on - strand, within MPMX20_04011 at 4207.629 kb on - strand, within MPMX20_04011 at 4207.677 kb on - strand at 4207.677 kb on - strand at 4207.686 kb on - strand at 4207.719 kb on + strand at 4207.738 kb on + strand at 4207.738 kb on + strand at 4207.738 kb on + strand at 4207.738 kb on + strand at 4207.744 kb on - strand at 4207.746 kb on - strand at 4207.746 kb on - strand at 4207.746 kb on - strand at 4207.746 kb on - strand at 4207.856 kb on - strand at 4207.955 kb on + strand, within MPMX20_04012 at 4207.955 kb on + strand, within MPMX20_04012 at 4207.958 kb on - strand, within MPMX20_04012 at 4207.963 kb on - strand, within MPMX20_04012 at 4207.963 kb on - strand, within MPMX20_04012 at 4208.008 kb on - strand, within MPMX20_04012 at 4208.023 kb on + strand, within MPMX20_04012 at 4208.079 kb on + strand, within MPMX20_04012 at 4208.087 kb on - strand, within MPMX20_04012 at 4208.110 kb on + strand, within MPMX20_04012 at 4208.164 kb on + strand, within MPMX20_04012 at 4208.172 kb on - strand, within MPMX20_04012 at 4208.202 kb on + strand at 4208.330 kb on - strand at 4208.332 kb on + strand at 4208.340 kb on - strand at 4208.340 kb on - strand at 4208.356 kb on + strand at 4208.378 kb on + strand, within MPMX20_04013 at 4208.378 kb on + strand, within MPMX20_04013 at 4208.378 kb on + strand, within MPMX20_04013 at 4208.383 kb on + strand, within MPMX20_04013 at 4208.383 kb on + strand, within MPMX20_04013 at 4208.386 kb on - strand, within MPMX20_04013 at 4208.391 kb on - strand, within MPMX20_04013 at 4208.391 kb on - strand, within MPMX20_04013 at 4208.455 kb on + strand, within MPMX20_04013 at 4208.464 kb on - strand, within MPMX20_04013 at 4208.464 kb on - strand, within MPMX20_04013 at 4208.464 kb on - strand, within MPMX20_04013 at 4208.504 kb on + strand, within MPMX20_04013 at 4208.652 kb on + strand, within MPMX20_04013 at 4208.670 kb on + strand, within MPMX20_04013 at 4208.678 kb on - strand, within MPMX20_04013
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 4,205,793 - +0.6 4,205,793 - -2.0 4,205,816 - +1.1 4,205,905 - MPMX20_04009 0.34 -0.5 4,205,927 + MPMX20_04009 0.42 +1.9 4,205,939 + MPMX20_04009 0.46 -1.0 4,205,954 + MPMX20_04009 0.51 +1.0 4,205,954 + MPMX20_04009 0.51 -1.2 4,205,973 - MPMX20_04009 0.57 +1.5 4,205,975 + MPMX20_04009 0.58 +1.2 4,206,129 - +1.9 4,206,443 - MPMX20_04010 0.34 -0.6 4,206,522 + MPMX20_04010 0.54 -0.1 4,206,527 + MPMX20_04010 0.55 -1.2 4,206,537 + MPMX20_04010 0.58 -0.3 4,206,541 + MPMX20_04010 0.59 +0.5 4,206,545 - MPMX20_04010 0.60 -2.8 4,206,585 + MPMX20_04010 0.70 +1.7 4,206,593 - MPMX20_04010 0.72 +1.2 4,206,631 + MPMX20_04010 0.82 -0.7 4,206,644 + MPMX20_04010 0.85 -0.8 4,206,654 + MPMX20_04010 0.88 -0.9 4,206,655 + MPMX20_04010 0.88 +2.3 4,206,704 + -1.7 4,206,717 - +0.6 4,206,964 - MPMX20_04011 0.19 +0.7 4,206,967 - MPMX20_04011 0.20 +8.8 4,207,002 - MPMX20_04011 0.23 -0.3 4,207,031 + MPMX20_04011 0.26 -1.3 4,207,134 - MPMX20_04011 0.36 -1.1 4,207,143 + MPMX20_04011 0.37 +2.7 4,207,238 + MPMX20_04011 0.47 +0.6 4,207,246 - MPMX20_04011 0.48 -0.1 4,207,246 - MPMX20_04011 0.48 +0.0 4,207,246 - MPMX20_04011 0.48 +0.6 4,207,246 - MPMX20_04011 0.48 -1.6 4,207,283 - MPMX20_04011 0.52 -0.5 4,207,348 - MPMX20_04011 0.58 +0.4 4,207,386 + MPMX20_04011 0.62 -1.3 4,207,386 + MPMX20_04011 0.62 +0.2 4,207,394 - MPMX20_04011 0.63 -0.6 4,207,394 - MPMX20_04011 0.63 +1.7 4,207,394 - MPMX20_04011 0.63 +2.4 4,207,429 + MPMX20_04011 0.66 +0.5 4,207,429 + MPMX20_04011 0.66 -2.4 4,207,468 + MPMX20_04011 0.70 -0.1 4,207,519 - MPMX20_04011 0.75 -0.7 4,207,525 - MPMX20_04011 0.76 +0.8 4,207,527 - MPMX20_04011 0.76 +0.9 4,207,541 + MPMX20_04011 0.78 -0.7 4,207,541 + MPMX20_04011 0.78 -0.1 4,207,549 - MPMX20_04011 0.79 +1.2 4,207,549 - MPMX20_04011 0.79 -0.0 4,207,575 - MPMX20_04011 0.81 +0.7 4,207,608 - MPMX20_04011 0.84 -0.7 4,207,629 - MPMX20_04011 0.87 -0.3 4,207,677 - -0.1 4,207,677 - -0.8 4,207,686 - -1.4 4,207,719 + -0.5 4,207,738 + -0.7 4,207,738 + +1.7 4,207,738 + +4.7 4,207,738 + -0.8 4,207,744 - -1.3 4,207,746 - -0.6 4,207,746 - +0.8 4,207,746 - -0.4 4,207,746 - -2.1 4,207,856 - +4.1 4,207,955 + MPMX20_04012 0.24 -0.3 4,207,955 + MPMX20_04012 0.24 -0.2 4,207,958 - MPMX20_04012 0.25 -0.8 4,207,963 - MPMX20_04012 0.26 -0.0 4,207,963 - MPMX20_04012 0.26 -1.5 4,208,008 - MPMX20_04012 0.39 -0.1 4,208,023 + MPMX20_04012 0.43 -3.2 4,208,079 + MPMX20_04012 0.58 -1.7 4,208,087 - MPMX20_04012 0.60 -0.3 4,208,110 + MPMX20_04012 0.66 -0.1 4,208,164 + MPMX20_04012 0.81 +1.8 4,208,172 - MPMX20_04012 0.83 -2.4 4,208,202 + -0.6 4,208,330 - -0.3 4,208,332 + +3.0 4,208,340 - +0.6 4,208,340 - -1.8 4,208,356 + -0.7 4,208,378 + MPMX20_04013 0.12 -0.6 4,208,378 + MPMX20_04013 0.12 -0.3 4,208,378 + MPMX20_04013 0.12 -0.7 4,208,383 + MPMX20_04013 0.12 -1.1 4,208,383 + MPMX20_04013 0.12 -0.3 4,208,386 - MPMX20_04013 0.13 +0.9 4,208,391 - MPMX20_04013 0.13 +1.5 4,208,391 - MPMX20_04013 0.13 -0.2 4,208,455 + MPMX20_04013 0.20 +0.6 4,208,464 - MPMX20_04013 0.21 +0.5 4,208,464 - MPMX20_04013 0.21 -1.5 4,208,464 - MPMX20_04013 0.21 -0.1 4,208,504 + MPMX20_04013 0.26 +0.0 4,208,652 + MPMX20_04013 0.42 -0.2 4,208,670 + MPMX20_04013 0.44 -1.7 4,208,678 - MPMX20_04013 0.45 -0.7
Or see this region's nucleotide sequence