Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03104

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03103 and MPMX20_03104 are separated by 167 nucleotidesMPMX20_03104 and MPMX20_03105 are separated by 157 nucleotidesMPMX20_03105 and MPMX20_03106 are separated by 42 nucleotides MPMX20_03103: MPMX20_03103 - D-alanyl-D-alanine endopeptidase, at 3,257,267 to 3,258,190 _03103 MPMX20_03104: MPMX20_03104 - Inner membrane protein YohC, at 3,258,358 to 3,258,945 _03104 MPMX20_03105: MPMX20_03105 - Inner membrane protein YohD, at 3,259,103 to 3,259,675 _03105 MPMX20_03106: MPMX20_03106 - putative oxidoreductase YohF, at 3,259,718 to 3,260,482 _03106 Position (kb) 3258 3259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3257.383 kb on - strand, within MPMX20_03103at 3257.419 kb on + strand, within MPMX20_03103at 3257.423 kb on - strand, within MPMX20_03103at 3257.458 kb on + strand, within MPMX20_03103at 3257.458 kb on + strand, within MPMX20_03103at 3257.466 kb on - strand, within MPMX20_03103at 3257.468 kb on + strand, within MPMX20_03103at 3257.476 kb on - strand, within MPMX20_03103at 3257.528 kb on - strand, within MPMX20_03103at 3257.537 kb on - strand, within MPMX20_03103at 3257.541 kb on + strand, within MPMX20_03103at 3257.598 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.601 kb on + strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.609 kb on - strand, within MPMX20_03103at 3257.621 kb on + strand, within MPMX20_03103at 3257.730 kb on + strand, within MPMX20_03103at 3257.775 kb on + strand, within MPMX20_03103at 3257.786 kb on - strand, within MPMX20_03103at 3257.947 kb on - strand, within MPMX20_03103at 3258.031 kb on + strand, within MPMX20_03103at 3258.144 kb on + strandat 3258.163 kb on - strandat 3258.164 kb on + strandat 3258.199 kb on - strandat 3258.219 kb on + strandat 3258.307 kb on + strandat 3258.356 kb on + strandat 3258.356 kb on + strandat 3258.356 kb on + strandat 3258.364 kb on - strandat 3258.364 kb on - strandat 3258.364 kb on - strandat 3258.364 kb on - strandat 3258.426 kb on + strand, within MPMX20_03104at 3258.462 kb on - strand, within MPMX20_03104at 3258.505 kb on - strand, within MPMX20_03104at 3258.539 kb on - strand, within MPMX20_03104at 3258.584 kb on - strand, within MPMX20_03104at 3258.595 kb on - strand, within MPMX20_03104at 3258.623 kb on + strand, within MPMX20_03104at 3258.632 kb on - strand, within MPMX20_03104at 3258.683 kb on + strand, within MPMX20_03104at 3258.685 kb on + strand, within MPMX20_03104at 3258.685 kb on + strand, within MPMX20_03104at 3258.693 kb on - strand, within MPMX20_03104at 3258.693 kb on - strand, within MPMX20_03104at 3258.735 kb on + strand, within MPMX20_03104at 3258.767 kb on - strand, within MPMX20_03104at 3258.828 kb on - strand, within MPMX20_03104at 3258.828 kb on - strand, within MPMX20_03104at 3258.839 kb on - strand, within MPMX20_03104at 3258.919 kb on + strandat 3258.957 kb on - strandat 3259.100 kb on - strandat 3259.116 kb on + strandat 3259.116 kb on + strandat 3259.124 kb on - strandat 3259.141 kb on - strandat 3259.148 kb on + strandat 3259.150 kb on - strandat 3259.156 kb on - strandat 3259.176 kb on + strand, within MPMX20_03105at 3259.176 kb on + strand, within MPMX20_03105at 3259.177 kb on - strand, within MPMX20_03105at 3259.177 kb on - strand, within MPMX20_03105at 3259.184 kb on - strand, within MPMX20_03105at 3259.184 kb on - strand, within MPMX20_03105at 3259.186 kb on + strand, within MPMX20_03105at 3259.186 kb on + strand, within MPMX20_03105at 3259.205 kb on + strand, within MPMX20_03105at 3259.205 kb on + strand, within MPMX20_03105at 3259.205 kb on + strand, within MPMX20_03105at 3259.205 kb on + strand, within MPMX20_03105at 3259.213 kb on - strand, within MPMX20_03105at 3259.213 kb on - strand, within MPMX20_03105at 3259.213 kb on - strand, within MPMX20_03105at 3259.213 kb on - strand, within MPMX20_03105at 3259.284 kb on - strand, within MPMX20_03105at 3259.284 kb on - strand, within MPMX20_03105at 3259.323 kb on + strand, within MPMX20_03105at 3259.359 kb on + strand, within MPMX20_03105at 3259.359 kb on + strand, within MPMX20_03105at 3259.374 kb on + strand, within MPMX20_03105at 3259.374 kb on + strand, within MPMX20_03105at 3259.374 kb on + strand, within MPMX20_03105at 3259.374 kb on + strand, within MPMX20_03105at 3259.375 kb on + strand, within MPMX20_03105at 3259.377 kb on - strand, within MPMX20_03105at 3259.377 kb on - strand, within MPMX20_03105at 3259.382 kb on - strand, within MPMX20_03105at 3259.382 kb on - strand, within MPMX20_03105at 3259.382 kb on - strand, within MPMX20_03105at 3259.382 kb on - strand, within MPMX20_03105at 3259.428 kb on + strand, within MPMX20_03105at 3259.446 kb on - strand, within MPMX20_03105at 3259.513 kb on - strand, within MPMX20_03105at 3259.551 kb on - strand, within MPMX20_03105at 3259.569 kb on - strand, within MPMX20_03105at 3259.569 kb on - strand, within MPMX20_03105at 3259.574 kb on - strand, within MPMX20_03105at 3259.590 kb on + strand, within MPMX20_03105at 3259.596 kb on + strand, within MPMX20_03105at 3259.598 kb on - strand, within MPMX20_03105at 3259.598 kb on - strand, within MPMX20_03105at 3259.598 kb on - strand, within MPMX20_03105at 3259.676 kb on + strandat 3259.676 kb on + strandat 3259.695 kb on + strandat 3259.819 kb on + strand, within MPMX20_03106at 3259.869 kb on + strand, within MPMX20_03106at 3259.899 kb on - strand, within MPMX20_03106

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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3,257,383 - MPMX20_03103 0.13 -2.7
3,257,419 + MPMX20_03103 0.16 -0.9
3,257,423 - MPMX20_03103 0.17 -0.2
3,257,458 + MPMX20_03103 0.21 -0.4
3,257,458 + MPMX20_03103 0.21 +1.9
3,257,466 - MPMX20_03103 0.22 -1.6
3,257,468 + MPMX20_03103 0.22 -0.1
3,257,476 - MPMX20_03103 0.23 -1.9
3,257,528 - MPMX20_03103 0.28 -1.7
3,257,537 - MPMX20_03103 0.29 -0.9
3,257,541 + MPMX20_03103 0.30 -1.7
3,257,598 + MPMX20_03103 0.36 -0.8
3,257,601 + MPMX20_03103 0.36 -0.3
3,257,601 + MPMX20_03103 0.36 -2.6
3,257,601 + MPMX20_03103 0.36 +1.3
3,257,601 + MPMX20_03103 0.36 +0.2
3,257,601 + MPMX20_03103 0.36 -0.6
3,257,601 + MPMX20_03103 0.36 -2.7
3,257,601 + MPMX20_03103 0.36 -1.7
3,257,601 + MPMX20_03103 0.36 -1.0
3,257,609 - MPMX20_03103 0.37 -1.3
3,257,609 - MPMX20_03103 0.37 -0.7
3,257,609 - MPMX20_03103 0.37 +0.6
3,257,609 - MPMX20_03103 0.37 +1.5
3,257,621 + MPMX20_03103 0.38 -2.2
3,257,730 + MPMX20_03103 0.50 -2.5
3,257,775 + MPMX20_03103 0.55 -2.2
3,257,786 - MPMX20_03103 0.56 +1.2
3,257,947 - MPMX20_03103 0.74 +0.3
3,258,031 + MPMX20_03103 0.83 +0.0
3,258,144 + +1.0
3,258,163 - +0.1
3,258,164 + -1.9
3,258,199 - -1.2
3,258,219 + -0.9
3,258,307 + -0.2
3,258,356 + +0.6
3,258,356 + +0.3
3,258,356 + +5.3
3,258,364 - +1.8
3,258,364 - -2.7
3,258,364 - -1.6
3,258,364 - +0.7
3,258,426 + MPMX20_03104 0.12 -1.6
3,258,462 - MPMX20_03104 0.18 +0.3
3,258,505 - MPMX20_03104 0.25 -0.4
3,258,539 - MPMX20_03104 0.31 +0.6
3,258,584 - MPMX20_03104 0.38 -0.3
3,258,595 - MPMX20_03104 0.40 -0.1
3,258,623 + MPMX20_03104 0.45 +1.0
3,258,632 - MPMX20_03104 0.47 -1.6
3,258,683 + MPMX20_03104 0.55 +0.7
3,258,685 + MPMX20_03104 0.56 -0.7
3,258,685 + MPMX20_03104 0.56 +1.2
3,258,693 - MPMX20_03104 0.57 +8.2
3,258,693 - MPMX20_03104 0.57 +1.9
3,258,735 + MPMX20_03104 0.64 -0.2
3,258,767 - MPMX20_03104 0.70 +2.5
3,258,828 - MPMX20_03104 0.80 -3.1
3,258,828 - MPMX20_03104 0.80 -1.0
3,258,839 - MPMX20_03104 0.82 -1.2
3,258,919 + +0.2
3,258,957 - -2.2
3,259,100 - +1.3
3,259,116 + -0.7
3,259,116 + -0.4
3,259,124 - -1.8
3,259,141 - -1.1
3,259,148 + +1.0
3,259,150 - -0.0
3,259,156 - -0.5
3,259,176 + MPMX20_03105 0.13 +0.6
3,259,176 + MPMX20_03105 0.13 +1.8
3,259,177 - MPMX20_03105 0.13 -0.7
3,259,177 - MPMX20_03105 0.13 -0.6
3,259,184 - MPMX20_03105 0.14 +1.9
3,259,184 - MPMX20_03105 0.14 +0.1
3,259,186 + MPMX20_03105 0.14 -0.9
3,259,186 + MPMX20_03105 0.14 -2.0
3,259,205 + MPMX20_03105 0.18 -2.4
3,259,205 + MPMX20_03105 0.18 -3.0
3,259,205 + MPMX20_03105 0.18 -1.5
3,259,205 + MPMX20_03105 0.18 -0.5
3,259,213 - MPMX20_03105 0.19 -1.3
3,259,213 - MPMX20_03105 0.19 -2.7
3,259,213 - MPMX20_03105 0.19 +0.6
3,259,213 - MPMX20_03105 0.19 -0.6
3,259,284 - MPMX20_03105 0.32 +3.7
3,259,284 - MPMX20_03105 0.32 +0.0
3,259,323 + MPMX20_03105 0.38 -0.7
3,259,359 + MPMX20_03105 0.45 -2.9
3,259,359 + MPMX20_03105 0.45 -1.8
3,259,374 + MPMX20_03105 0.47 -0.6
3,259,374 + MPMX20_03105 0.47 -1.2
3,259,374 + MPMX20_03105 0.47 -0.3
3,259,374 + MPMX20_03105 0.47 -0.5
3,259,375 + MPMX20_03105 0.47 -0.7
3,259,377 - MPMX20_03105 0.48 -1.2
3,259,377 - MPMX20_03105 0.48 -0.1
3,259,382 - MPMX20_03105 0.49 +1.0
3,259,382 - MPMX20_03105 0.49 +1.3
3,259,382 - MPMX20_03105 0.49 +0.4
3,259,382 - MPMX20_03105 0.49 +0.1
3,259,428 + MPMX20_03105 0.57 +1.1
3,259,446 - MPMX20_03105 0.60 -1.9
3,259,513 - MPMX20_03105 0.72 -2.1
3,259,551 - MPMX20_03105 0.78 -1.7
3,259,569 - MPMX20_03105 0.81 +1.1
3,259,569 - MPMX20_03105 0.81 +0.0
3,259,574 - MPMX20_03105 0.82 -0.9
3,259,590 + MPMX20_03105 0.85 +0.9
3,259,596 + MPMX20_03105 0.86 -2.3
3,259,598 - MPMX20_03105 0.86 +1.3
3,259,598 - MPMX20_03105 0.86 +1.9
3,259,598 - MPMX20_03105 0.86 -0.2
3,259,676 + -0.3
3,259,676 + -0.7
3,259,695 + -2.3
3,259,819 + MPMX20_03106 0.13 -2.1
3,259,869 + MPMX20_03106 0.20 +1.0
3,259,899 - MPMX20_03106 0.24 +1.2

Or see this region's nucleotide sequence