Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03077

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03075 and MPMX20_03076 are separated by 42 nucleotidesMPMX20_03076 and MPMX20_03077 overlap by 4 nucleotidesMPMX20_03077 and MPMX20_03078 are separated by 628 nucleotides MPMX20_03075: MPMX20_03075 - HTH-type transcriptional repressor NagR, at 3,225,238 to 3,225,984 _03075 MPMX20_03076: MPMX20_03076 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 3,226,027 to 3,226,827 _03076 MPMX20_03077: MPMX20_03077 - Hydroxyethylthiazole kinase, at 3,226,824 to 3,227,594 _03077 MPMX20_03078: MPMX20_03078 - Diaminobutyrate--2-oxoglutarate aminotransferase, at 3,228,223 to 3,229,596 _03078 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 3225.846 kb on + strand, within MPMX20_03075at 3225.846 kb on + strand, within MPMX20_03075at 3225.861 kb on + strand, within MPMX20_03075at 3225.861 kb on + strand, within MPMX20_03075at 3225.999 kb on + strandat 3226.004 kb on + strandat 3226.007 kb on - strandat 3226.018 kb on + strandat 3226.026 kb on - strandat 3226.026 kb on - strandat 3226.056 kb on + strandat 3226.064 kb on - strandat 3226.064 kb on - strandat 3226.074 kb on + strandat 3226.214 kb on + strand, within MPMX20_03076at 3226.298 kb on + strand, within MPMX20_03076at 3226.306 kb on - strand, within MPMX20_03076at 3226.306 kb on - strand, within MPMX20_03076at 3226.365 kb on + strand, within MPMX20_03076at 3226.373 kb on - strand, within MPMX20_03076at 3226.408 kb on - strand, within MPMX20_03076at 3226.408 kb on - strand, within MPMX20_03076at 3226.408 kb on - strand, within MPMX20_03076at 3226.410 kb on + strand, within MPMX20_03076at 3226.410 kb on + strand, within MPMX20_03076at 3226.418 kb on - strand, within MPMX20_03076at 3226.418 kb on - strand, within MPMX20_03076at 3226.511 kb on - strand, within MPMX20_03076at 3226.513 kb on + strand, within MPMX20_03076at 3226.521 kb on - strand, within MPMX20_03076at 3226.521 kb on - strand, within MPMX20_03076at 3226.541 kb on + strand, within MPMX20_03076at 3226.541 kb on + strand, within MPMX20_03076at 3226.541 kb on - strand, within MPMX20_03076at 3226.549 kb on - strand, within MPMX20_03076at 3226.549 kb on - strand, within MPMX20_03076at 3226.577 kb on + strand, within MPMX20_03076at 3226.716 kb on + strand, within MPMX20_03076at 3226.759 kb on - strandat 3226.835 kb on + strandat 3226.843 kb on + strandat 3226.843 kb on + strandat 3226.851 kb on - strandat 3226.851 kb on - strandat 3226.877 kb on - strandat 3226.918 kb on + strand, within MPMX20_03077at 3227.005 kb on + strand, within MPMX20_03077at 3227.033 kb on - strand, within MPMX20_03077at 3227.043 kb on + strand, within MPMX20_03077at 3227.043 kb on + strand, within MPMX20_03077at 3227.051 kb on - strand, within MPMX20_03077at 3227.087 kb on + strand, within MPMX20_03077at 3227.092 kb on + strand, within MPMX20_03077at 3227.095 kb on - strand, within MPMX20_03077at 3227.110 kb on - strand, within MPMX20_03077at 3227.186 kb on + strand, within MPMX20_03077at 3227.196 kb on + strand, within MPMX20_03077at 3227.294 kb on - strand, within MPMX20_03077at 3227.316 kb on + strand, within MPMX20_03077at 3227.330 kb on - strand, within MPMX20_03077at 3227.416 kb on - strand, within MPMX20_03077at 3227.473 kb on - strand, within MPMX20_03077at 3227.503 kb on + strand, within MPMX20_03077at 3227.505 kb on - strand, within MPMX20_03077at 3227.510 kb on - strand, within MPMX20_03077at 3227.529 kb on - strandat 3227.582 kb on + strandat 3227.582 kb on + strandat 3227.590 kb on - strandat 3227.590 kb on - strandat 3227.720 kb on - strandat 3227.742 kb on - strandat 3227.760 kb on + strandat 3227.760 kb on + strandat 3227.760 kb on + strandat 3227.763 kb on - strandat 3227.771 kb on + strandat 3227.780 kb on - strandat 3227.815 kb on + strandat 3227.828 kb on - strandat 3227.828 kb on - strandat 3227.828 kb on - strandat 3227.828 kb on - strandat 3227.828 kb on - strandat 3227.828 kb on - strandat 3227.833 kb on + strandat 3227.869 kb on + strandat 3227.904 kb on - strandat 3227.919 kb on + strandat 3227.926 kb on - strandat 3227.927 kb on - strandat 3227.931 kb on + strandat 3227.932 kb on + strandat 3227.938 kb on - strandat 3227.939 kb on - strandat 3227.939 kb on - strandat 3227.940 kb on - strandat 3227.942 kb on + strandat 3227.948 kb on - strandat 3228.012 kb on + strandat 3228.067 kb on + strandat 3228.073 kb on - strandat 3228.073 kb on - strandat 3228.088 kb on - strandat 3228.088 kb on - strandat 3228.090 kb on + strandat 3228.103 kb on + strandat 3228.103 kb on + strandat 3228.103 kb on + strandat 3228.103 kb on + strandat 3228.111 kb on - strandat 3228.113 kb on - strandat 3228.133 kb on - strandat 3228.201 kb on - strandat 3228.307 kb on + strandat 3228.345 kb on + strandat 3228.345 kb on + strandat 3228.359 kb on + strandat 3228.419 kb on + strand, within MPMX20_03078at 3228.427 kb on - strand, within MPMX20_03078at 3228.427 kb on - strand, within MPMX20_03078at 3228.427 kb on - strand, within MPMX20_03078at 3228.427 kb on - strand, within MPMX20_03078at 3228.427 kb on - strand, within MPMX20_03078at 3228.438 kb on + strand, within MPMX20_03078at 3228.440 kb on + strand, within MPMX20_03078at 3228.497 kb on + strand, within MPMX20_03078at 3228.497 kb on + strand, within MPMX20_03078at 3228.505 kb on - strand, within MPMX20_03078at 3228.515 kb on - strand, within MPMX20_03078at 3228.545 kb on + strand, within MPMX20_03078at 3228.564 kb on + strand, within MPMX20_03078at 3228.572 kb on - strand, within MPMX20_03078at 3228.572 kb on - strand, within MPMX20_03078

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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3,225,846 + MPMX20_03075 0.81 +2.9
3,225,846 + MPMX20_03075 0.81 +0.4
3,225,861 + MPMX20_03075 0.83 +0.3
3,225,861 + MPMX20_03075 0.83 +0.6
3,225,999 + +0.4
3,226,004 + -2.4
3,226,007 - +1.1
3,226,018 + -1.7
3,226,026 - +1.9
3,226,026 - -1.7
3,226,056 + -0.3
3,226,064 - -1.6
3,226,064 - +1.1
3,226,074 + +0.9
3,226,214 + MPMX20_03076 0.23 +2.2
3,226,298 + MPMX20_03076 0.34 -1.5
3,226,306 - MPMX20_03076 0.35 -1.3
3,226,306 - MPMX20_03076 0.35 -0.6
3,226,365 + MPMX20_03076 0.42 +0.3
3,226,373 - MPMX20_03076 0.43 -1.3
3,226,408 - MPMX20_03076 0.48 -0.7
3,226,408 - MPMX20_03076 0.48 +0.2
3,226,408 - MPMX20_03076 0.48 -1.3
3,226,410 + MPMX20_03076 0.48 -0.5
3,226,410 + MPMX20_03076 0.48 -1.3
3,226,418 - MPMX20_03076 0.49 -1.0
3,226,418 - MPMX20_03076 0.49 -2.4
3,226,511 - MPMX20_03076 0.60 -1.5
3,226,513 + MPMX20_03076 0.61 -0.4
3,226,521 - MPMX20_03076 0.62 +0.7
3,226,521 - MPMX20_03076 0.62 -0.4
3,226,541 + MPMX20_03076 0.64 -1.8
3,226,541 + MPMX20_03076 0.64 +0.3
3,226,541 - MPMX20_03076 0.64 +0.9
3,226,549 - MPMX20_03076 0.65 -0.1
3,226,549 - MPMX20_03076 0.65 -2.6
3,226,577 + MPMX20_03076 0.69 +0.4
3,226,716 + MPMX20_03076 0.86 -2.9
3,226,759 - -2.7
3,226,835 + -0.4
3,226,843 + +0.1
3,226,843 + +0.8
3,226,851 - -0.0
3,226,851 - +1.7
3,226,877 - -0.1
3,226,918 + MPMX20_03077 0.12 +1.1
3,227,005 + MPMX20_03077 0.23 -0.1
3,227,033 - MPMX20_03077 0.27 -0.9
3,227,043 + MPMX20_03077 0.28 -1.2
3,227,043 + MPMX20_03077 0.28 +0.0
3,227,051 - MPMX20_03077 0.29 +0.0
3,227,087 + MPMX20_03077 0.34 +8.9
3,227,092 + MPMX20_03077 0.35 -2.7
3,227,095 - MPMX20_03077 0.35 -1.9
3,227,110 - MPMX20_03077 0.37 -2.0
3,227,186 + MPMX20_03077 0.47 +0.2
3,227,196 + MPMX20_03077 0.48 -2.8
3,227,294 - MPMX20_03077 0.61 -3.2
3,227,316 + MPMX20_03077 0.64 -0.4
3,227,330 - MPMX20_03077 0.66 -2.8
3,227,416 - MPMX20_03077 0.77 +0.2
3,227,473 - MPMX20_03077 0.84 -0.7
3,227,503 + MPMX20_03077 0.88 +1.9
3,227,505 - MPMX20_03077 0.88 -0.1
3,227,510 - MPMX20_03077 0.89 +1.2
3,227,529 - -1.8
3,227,582 + +0.3
3,227,582 + +2.9
3,227,590 - -2.3
3,227,590 - -2.2
3,227,720 - -0.7
3,227,742 - -0.3
3,227,760 + -0.7
3,227,760 + +1.1
3,227,760 + -0.5
3,227,763 - +0.4
3,227,771 + -0.8
3,227,780 - -1.9
3,227,815 + -2.5
3,227,828 - +2.0
3,227,828 - -0.7
3,227,828 - -0.5
3,227,828 - +0.3
3,227,828 - +2.3
3,227,828 - +0.3
3,227,833 + -2.7
3,227,869 + -2.4
3,227,904 - +0.9
3,227,919 + -0.3
3,227,926 - -0.6
3,227,927 - +0.0
3,227,931 + -0.5
3,227,932 + -1.2
3,227,938 - +0.0
3,227,939 - -2.6
3,227,939 - -2.2
3,227,940 - -0.6
3,227,942 + -1.8
3,227,948 - -0.6
3,228,012 + -0.4
3,228,067 + -0.8
3,228,073 - -0.0
3,228,073 - +0.1
3,228,088 - +1.3
3,228,088 - +1.3
3,228,090 + +1.7
3,228,103 + -0.4
3,228,103 + -0.3
3,228,103 + +1.0
3,228,103 + -0.8
3,228,111 - +2.8
3,228,113 - +1.4
3,228,133 - -2.1
3,228,201 - -1.9
3,228,307 + +1.3
3,228,345 + -0.3
3,228,345 + -0.0
3,228,359 + -2.2
3,228,419 + MPMX20_03078 0.14 -0.4
3,228,427 - MPMX20_03078 0.15 -0.0
3,228,427 - MPMX20_03078 0.15 -0.3
3,228,427 - MPMX20_03078 0.15 -0.7
3,228,427 - MPMX20_03078 0.15 -0.9
3,228,427 - MPMX20_03078 0.15 -0.5
3,228,438 + MPMX20_03078 0.16 +0.4
3,228,440 + MPMX20_03078 0.16 -0.4
3,228,497 + MPMX20_03078 0.20 -2.3
3,228,497 + MPMX20_03078 0.20 -1.4
3,228,505 - MPMX20_03078 0.21 +0.3
3,228,515 - MPMX20_03078 0.21 +0.5
3,228,545 + MPMX20_03078 0.23 -3.1
3,228,564 + MPMX20_03078 0.25 +1.1
3,228,572 - MPMX20_03078 0.25 -1.4
3,228,572 - MPMX20_03078 0.25 +2.0

Or see this region's nucleotide sequence