Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03075 and MPMX20_03076 are separated by 42 nucleotides MPMX20_03076 and MPMX20_03077 overlap by 4 nucleotides MPMX20_03077 and MPMX20_03078 are separated by 628 nucleotides
MPMX20_03075: MPMX20_03075 - HTH-type transcriptional repressor NagR, at 3,225,238 to 3,225,984
_03075
MPMX20_03076: MPMX20_03076 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 3,226,027 to 3,226,827
_03076
MPMX20_03077: MPMX20_03077 - Hydroxyethylthiazole kinase, at 3,226,824 to 3,227,594
_03077
MPMX20_03078: MPMX20_03078 - Diaminobutyrate--2-oxoglutarate aminotransferase, at 3,228,223 to 3,229,596
_03078
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 3225.846 kb on + strand, within MPMX20_03075 at 3225.846 kb on + strand, within MPMX20_03075 at 3225.861 kb on + strand, within MPMX20_03075 at 3225.861 kb on + strand, within MPMX20_03075 at 3225.999 kb on + strand at 3226.004 kb on + strand at 3226.007 kb on - strand at 3226.018 kb on + strand at 3226.026 kb on - strand at 3226.026 kb on - strand at 3226.056 kb on + strand at 3226.064 kb on - strand at 3226.064 kb on - strand at 3226.074 kb on + strand at 3226.214 kb on + strand, within MPMX20_03076 at 3226.298 kb on + strand, within MPMX20_03076 at 3226.306 kb on - strand, within MPMX20_03076 at 3226.306 kb on - strand, within MPMX20_03076 at 3226.365 kb on + strand, within MPMX20_03076 at 3226.373 kb on - strand, within MPMX20_03076 at 3226.408 kb on - strand, within MPMX20_03076 at 3226.408 kb on - strand, within MPMX20_03076 at 3226.408 kb on - strand, within MPMX20_03076 at 3226.410 kb on + strand, within MPMX20_03076 at 3226.410 kb on + strand, within MPMX20_03076 at 3226.418 kb on - strand, within MPMX20_03076 at 3226.418 kb on - strand, within MPMX20_03076 at 3226.511 kb on - strand, within MPMX20_03076 at 3226.513 kb on + strand, within MPMX20_03076 at 3226.521 kb on - strand, within MPMX20_03076 at 3226.521 kb on - strand, within MPMX20_03076 at 3226.541 kb on + strand, within MPMX20_03076 at 3226.541 kb on + strand, within MPMX20_03076 at 3226.541 kb on - strand, within MPMX20_03076 at 3226.549 kb on - strand, within MPMX20_03076 at 3226.549 kb on - strand, within MPMX20_03076 at 3226.577 kb on + strand, within MPMX20_03076 at 3226.716 kb on + strand, within MPMX20_03076 at 3226.759 kb on - strand at 3226.835 kb on + strand at 3226.843 kb on + strand at 3226.843 kb on + strand at 3226.851 kb on - strand at 3226.851 kb on - strand at 3226.877 kb on - strand at 3226.918 kb on + strand, within MPMX20_03077 at 3227.005 kb on + strand, within MPMX20_03077 at 3227.033 kb on - strand, within MPMX20_03077 at 3227.043 kb on + strand, within MPMX20_03077 at 3227.043 kb on + strand, within MPMX20_03077 at 3227.051 kb on - strand, within MPMX20_03077 at 3227.087 kb on + strand, within MPMX20_03077 at 3227.092 kb on + strand, within MPMX20_03077 at 3227.095 kb on - strand, within MPMX20_03077 at 3227.110 kb on - strand, within MPMX20_03077 at 3227.186 kb on + strand, within MPMX20_03077 at 3227.196 kb on + strand, within MPMX20_03077 at 3227.294 kb on - strand, within MPMX20_03077 at 3227.316 kb on + strand, within MPMX20_03077 at 3227.330 kb on - strand, within MPMX20_03077 at 3227.416 kb on - strand, within MPMX20_03077 at 3227.473 kb on - strand, within MPMX20_03077 at 3227.503 kb on + strand, within MPMX20_03077 at 3227.505 kb on - strand, within MPMX20_03077 at 3227.510 kb on - strand, within MPMX20_03077 at 3227.529 kb on - strand at 3227.582 kb on + strand at 3227.582 kb on + strand at 3227.590 kb on - strand at 3227.590 kb on - strand at 3227.720 kb on - strand at 3227.742 kb on - strand at 3227.760 kb on + strand at 3227.760 kb on + strand at 3227.760 kb on + strand at 3227.763 kb on - strand at 3227.771 kb on + strand at 3227.780 kb on - strand at 3227.815 kb on + strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.833 kb on + strand at 3227.869 kb on + strand at 3227.904 kb on - strand at 3227.919 kb on + strand at 3227.926 kb on - strand at 3227.927 kb on - strand at 3227.931 kb on + strand at 3227.932 kb on + strand at 3227.938 kb on - strand at 3227.939 kb on - strand at 3227.939 kb on - strand at 3227.940 kb on - strand at 3227.942 kb on + strand at 3227.948 kb on - strand at 3228.012 kb on + strand at 3228.067 kb on + strand at 3228.073 kb on - strand at 3228.073 kb on - strand at 3228.088 kb on - strand at 3228.088 kb on - strand at 3228.090 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.111 kb on - strand at 3228.113 kb on - strand at 3228.133 kb on - strand at 3228.201 kb on - strand at 3228.307 kb on + strand at 3228.345 kb on + strand at 3228.345 kb on + strand at 3228.359 kb on + strand at 3228.419 kb on + strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.438 kb on + strand, within MPMX20_03078 at 3228.440 kb on + strand, within MPMX20_03078 at 3228.497 kb on + strand, within MPMX20_03078 at 3228.497 kb on + strand, within MPMX20_03078 at 3228.505 kb on - strand, within MPMX20_03078 at 3228.515 kb on - strand, within MPMX20_03078 at 3228.545 kb on + strand, within MPMX20_03078 at 3228.564 kb on + strand, within MPMX20_03078 at 3228.572 kb on - strand, within MPMX20_03078 at 3228.572 kb on - strand, within MPMX20_03078
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 3,225,846 + MPMX20_03075 0.81 +2.9 3,225,846 + MPMX20_03075 0.81 +0.4 3,225,861 + MPMX20_03075 0.83 +0.3 3,225,861 + MPMX20_03075 0.83 +0.6 3,225,999 + +0.4 3,226,004 + -2.4 3,226,007 - +1.1 3,226,018 + -1.7 3,226,026 - +1.9 3,226,026 - -1.7 3,226,056 + -0.3 3,226,064 - -1.6 3,226,064 - +1.1 3,226,074 + +0.9 3,226,214 + MPMX20_03076 0.23 +2.2 3,226,298 + MPMX20_03076 0.34 -1.5 3,226,306 - MPMX20_03076 0.35 -1.3 3,226,306 - MPMX20_03076 0.35 -0.6 3,226,365 + MPMX20_03076 0.42 +0.3 3,226,373 - MPMX20_03076 0.43 -1.3 3,226,408 - MPMX20_03076 0.48 -0.7 3,226,408 - MPMX20_03076 0.48 +0.2 3,226,408 - MPMX20_03076 0.48 -1.3 3,226,410 + MPMX20_03076 0.48 -0.5 3,226,410 + MPMX20_03076 0.48 -1.3 3,226,418 - MPMX20_03076 0.49 -1.0 3,226,418 - MPMX20_03076 0.49 -2.4 3,226,511 - MPMX20_03076 0.60 -1.5 3,226,513 + MPMX20_03076 0.61 -0.4 3,226,521 - MPMX20_03076 0.62 +0.7 3,226,521 - MPMX20_03076 0.62 -0.4 3,226,541 + MPMX20_03076 0.64 -1.8 3,226,541 + MPMX20_03076 0.64 +0.3 3,226,541 - MPMX20_03076 0.64 +0.9 3,226,549 - MPMX20_03076 0.65 -0.1 3,226,549 - MPMX20_03076 0.65 -2.6 3,226,577 + MPMX20_03076 0.69 +0.4 3,226,716 + MPMX20_03076 0.86 -2.9 3,226,759 - -2.7 3,226,835 + -0.4 3,226,843 + +0.1 3,226,843 + +0.8 3,226,851 - -0.0 3,226,851 - +1.7 3,226,877 - -0.1 3,226,918 + MPMX20_03077 0.12 +1.1 3,227,005 + MPMX20_03077 0.23 -0.1 3,227,033 - MPMX20_03077 0.27 -0.9 3,227,043 + MPMX20_03077 0.28 -1.2 3,227,043 + MPMX20_03077 0.28 +0.0 3,227,051 - MPMX20_03077 0.29 +0.0 3,227,087 + MPMX20_03077 0.34 +8.9 3,227,092 + MPMX20_03077 0.35 -2.7 3,227,095 - MPMX20_03077 0.35 -1.9 3,227,110 - MPMX20_03077 0.37 -2.0 3,227,186 + MPMX20_03077 0.47 +0.2 3,227,196 + MPMX20_03077 0.48 -2.8 3,227,294 - MPMX20_03077 0.61 -3.2 3,227,316 + MPMX20_03077 0.64 -0.4 3,227,330 - MPMX20_03077 0.66 -2.8 3,227,416 - MPMX20_03077 0.77 +0.2 3,227,473 - MPMX20_03077 0.84 -0.7 3,227,503 + MPMX20_03077 0.88 +1.9 3,227,505 - MPMX20_03077 0.88 -0.1 3,227,510 - MPMX20_03077 0.89 +1.2 3,227,529 - -1.8 3,227,582 + +0.3 3,227,582 + +2.9 3,227,590 - -2.3 3,227,590 - -2.2 3,227,720 - -0.7 3,227,742 - -0.3 3,227,760 + -0.7 3,227,760 + +1.1 3,227,760 + -0.5 3,227,763 - +0.4 3,227,771 + -0.8 3,227,780 - -1.9 3,227,815 + -2.5 3,227,828 - +2.0 3,227,828 - -0.7 3,227,828 - -0.5 3,227,828 - +0.3 3,227,828 - +2.3 3,227,828 - +0.3 3,227,833 + -2.7 3,227,869 + -2.4 3,227,904 - +0.9 3,227,919 + -0.3 3,227,926 - -0.6 3,227,927 - +0.0 3,227,931 + -0.5 3,227,932 + -1.2 3,227,938 - +0.0 3,227,939 - -2.6 3,227,939 - -2.2 3,227,940 - -0.6 3,227,942 + -1.8 3,227,948 - -0.6 3,228,012 + -0.4 3,228,067 + -0.8 3,228,073 - -0.0 3,228,073 - +0.1 3,228,088 - +1.3 3,228,088 - +1.3 3,228,090 + +1.7 3,228,103 + -0.4 3,228,103 + -0.3 3,228,103 + +1.0 3,228,103 + -0.8 3,228,111 - +2.8 3,228,113 - +1.4 3,228,133 - -2.1 3,228,201 - -1.9 3,228,307 + +1.3 3,228,345 + -0.3 3,228,345 + -0.0 3,228,359 + -2.2 3,228,419 + MPMX20_03078 0.14 -0.4 3,228,427 - MPMX20_03078 0.15 -0.0 3,228,427 - MPMX20_03078 0.15 -0.3 3,228,427 - MPMX20_03078 0.15 -0.7 3,228,427 - MPMX20_03078 0.15 -0.9 3,228,427 - MPMX20_03078 0.15 -0.5 3,228,438 + MPMX20_03078 0.16 +0.4 3,228,440 + MPMX20_03078 0.16 -0.4 3,228,497 + MPMX20_03078 0.20 -2.3 3,228,497 + MPMX20_03078 0.20 -1.4 3,228,505 - MPMX20_03078 0.21 +0.3 3,228,515 - MPMX20_03078 0.21 +0.5 3,228,545 + MPMX20_03078 0.23 -3.1 3,228,564 + MPMX20_03078 0.25 +1.1 3,228,572 - MPMX20_03078 0.25 -1.4 3,228,572 - MPMX20_03078 0.25 +2.0
Or see this region's nucleotide sequence