Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02910 and MPMX20_02911 are separated by 2 nucleotides MPMX20_02911 and MPMX20_02912 are separated by 82 nucleotides MPMX20_02912 and MPMX20_02913 are separated by 40 nucleotides MPMX20_02913 and MPMX20_02914 are separated by 117 nucleotides
MPMX20_02910: MPMX20_02910 - hypothetical protein, at 3,050,442 to 3,051,296
_02910
MPMX20_02911: MPMX20_02911 - hypothetical protein, at 3,051,299 to 3,052,153
_02911
MPMX20_02912: MPMX20_02912 - hypothetical protein, at 3,052,236 to 3,052,457
_02912
MPMX20_02913: MPMX20_02913 - hypothetical protein, at 3,052,498 to 3,052,719
_02913
MPMX20_02914: MPMX20_02914 - HTH-type transcriptional regulator PrtR, at 3,052,837 to 3,053,547
_02914
Position (kb)
3052
3053 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3051.248 kb on + strand at 3051.251 kb on - strand at 3051.256 kb on - strand at 3051.256 kb on - strand at 3051.300 kb on - strand at 3051.300 kb on - strand at 3051.311 kb on - strand at 3051.338 kb on + strand at 3051.340 kb on - strand at 3051.340 kb on - strand at 3051.361 kb on - strand at 3051.371 kb on - strand at 3051.394 kb on - strand, within MPMX20_02911 at 3051.442 kb on - strand, within MPMX20_02911 at 3051.460 kb on + strand, within MPMX20_02911 at 3051.465 kb on + strand, within MPMX20_02911 at 3051.465 kb on + strand, within MPMX20_02911 at 3051.490 kb on + strand, within MPMX20_02911 at 3051.502 kb on + strand, within MPMX20_02911 at 3051.502 kb on + strand, within MPMX20_02911 at 3051.502 kb on + strand, within MPMX20_02911 at 3051.510 kb on - strand, within MPMX20_02911 at 3051.510 kb on - strand, within MPMX20_02911 at 3051.510 kb on - strand, within MPMX20_02911 at 3051.510 kb on - strand, within MPMX20_02911 at 3051.510 kb on - strand, within MPMX20_02911 at 3051.514 kb on + strand, within MPMX20_02911 at 3051.514 kb on + strand, within MPMX20_02911 at 3051.514 kb on + strand, within MPMX20_02911 at 3051.514 kb on + strand, within MPMX20_02911 at 3051.514 kb on + strand, within MPMX20_02911 at 3051.522 kb on - strand, within MPMX20_02911 at 3051.522 kb on - strand, within MPMX20_02911 at 3051.522 kb on - strand, within MPMX20_02911 at 3051.527 kb on - strand, within MPMX20_02911 at 3051.555 kb on + strand, within MPMX20_02911 at 3051.571 kb on - strand, within MPMX20_02911 at 3051.571 kb on - strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.595 kb on + strand, within MPMX20_02911 at 3051.596 kb on + strand, within MPMX20_02911 at 3051.596 kb on + strand, within MPMX20_02911 at 3051.596 kb on + strand, within MPMX20_02911 at 3051.596 kb on + strand, within MPMX20_02911 at 3051.596 kb on + strand, within MPMX20_02911 at 3051.596 kb on + strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.603 kb on - strand, within MPMX20_02911 at 3051.604 kb on - strand, within MPMX20_02911 at 3051.604 kb on - strand, within MPMX20_02911 at 3051.604 kb on - strand, within MPMX20_02911 at 3051.604 kb on - strand, within MPMX20_02911 at 3051.608 kb on - strand, within MPMX20_02911 at 3051.609 kb on + strand, within MPMX20_02911 at 3051.624 kb on + strand, within MPMX20_02911 at 3051.710 kb on + strand, within MPMX20_02911 at 3051.718 kb on - strand, within MPMX20_02911 at 3051.734 kb on + strand, within MPMX20_02911 at 3051.742 kb on - strand, within MPMX20_02911 at 3051.742 kb on - strand, within MPMX20_02911 at 3051.762 kb on - strand, within MPMX20_02911 at 3051.867 kb on + strand, within MPMX20_02911 at 3051.882 kb on + strand, within MPMX20_02911 at 3051.890 kb on - strand, within MPMX20_02911 at 3051.907 kb on + strand, within MPMX20_02911 at 3051.912 kb on + strand, within MPMX20_02911 at 3051.912 kb on + strand, within MPMX20_02911 at 3051.917 kb on + strand, within MPMX20_02911 at 3051.917 kb on + strand, within MPMX20_02911 at 3051.920 kb on - strand, within MPMX20_02911 at 3051.922 kb on + strand, within MPMX20_02911 at 3051.925 kb on - strand, within MPMX20_02911 at 3051.925 kb on - strand, within MPMX20_02911 at 3051.932 kb on - strand, within MPMX20_02911 at 3051.938 kb on - strand, within MPMX20_02911 at 3051.947 kb on - strand, within MPMX20_02911 at 3051.983 kb on + strand, within MPMX20_02911 at 3051.990 kb on + strand, within MPMX20_02911 at 3051.991 kb on - strand, within MPMX20_02911 at 3052.038 kb on - strand, within MPMX20_02911 at 3052.040 kb on + strand, within MPMX20_02911 at 3052.099 kb on + strand at 3052.105 kb on - strand at 3052.107 kb on - strand at 3052.111 kb on + strand at 3052.112 kb on + strand at 3052.217 kb on + strand at 3052.253 kb on + strand at 3052.321 kb on + strand, within MPMX20_02912 at 3052.474 kb on + strand at 3052.518 kb on + strand at 3052.519 kb on + strand at 3052.620 kb on + strand, within MPMX20_02913 at 3052.647 kb on + strand, within MPMX20_02913 at 3052.650 kb on + strand, within MPMX20_02913 at 3052.818 kb on + strand at 3052.818 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 3,051,248 + +0.9 3,051,251 - +0.4 3,051,256 - +1.1 3,051,256 - -1.9 3,051,300 - +0.4 3,051,300 - -0.7 3,051,311 - -1.8 3,051,338 + -3.6 3,051,340 - +1.3 3,051,340 - -3.3 3,051,361 - +1.3 3,051,371 - -1.5 3,051,394 - MPMX20_02911 0.11 +1.6 3,051,442 - MPMX20_02911 0.17 -1.2 3,051,460 + MPMX20_02911 0.19 -1.4 3,051,465 + MPMX20_02911 0.19 +0.5 3,051,465 + MPMX20_02911 0.19 +0.7 3,051,490 + MPMX20_02911 0.22 -0.8 3,051,502 + MPMX20_02911 0.24 -0.6 3,051,502 + MPMX20_02911 0.24 -1.3 3,051,502 + MPMX20_02911 0.24 -1.3 3,051,510 - MPMX20_02911 0.25 +0.4 3,051,510 - MPMX20_02911 0.25 +0.4 3,051,510 - MPMX20_02911 0.25 -0.1 3,051,510 - MPMX20_02911 0.25 +0.3 3,051,510 - MPMX20_02911 0.25 +2.3 3,051,514 + MPMX20_02911 0.25 -0.3 3,051,514 + MPMX20_02911 0.25 -0.1 3,051,514 + MPMX20_02911 0.25 +3.0 3,051,514 + MPMX20_02911 0.25 +0.2 3,051,514 + MPMX20_02911 0.25 -2.9 3,051,522 - MPMX20_02911 0.26 +1.3 3,051,522 - MPMX20_02911 0.26 -1.1 3,051,522 - MPMX20_02911 0.26 +1.7 3,051,527 - MPMX20_02911 0.27 -2.0 3,051,555 + MPMX20_02911 0.30 -0.1 3,051,571 - MPMX20_02911 0.32 +2.1 3,051,571 - MPMX20_02911 0.32 -0.9 3,051,595 + MPMX20_02911 0.35 +2.0 3,051,595 + MPMX20_02911 0.35 +1.5 3,051,595 + MPMX20_02911 0.35 +0.8 3,051,595 + MPMX20_02911 0.35 -0.5 3,051,595 + MPMX20_02911 0.35 +0.5 3,051,595 + MPMX20_02911 0.35 -0.7 3,051,595 + MPMX20_02911 0.35 -3.6 3,051,595 + MPMX20_02911 0.35 +2.7 3,051,595 + MPMX20_02911 0.35 -1.3 3,051,595 + MPMX20_02911 0.35 -0.0 3,051,595 + MPMX20_02911 0.35 +2.8 3,051,595 + MPMX20_02911 0.35 +0.5 3,051,595 + MPMX20_02911 0.35 +0.1 3,051,595 + MPMX20_02911 0.35 +1.8 3,051,595 + MPMX20_02911 0.35 +0.1 3,051,595 + MPMX20_02911 0.35 -0.6 3,051,595 + MPMX20_02911 0.35 -1.5 3,051,595 + MPMX20_02911 0.35 +0.1 3,051,595 + MPMX20_02911 0.35 +0.8 3,051,595 + MPMX20_02911 0.35 -1.3 3,051,595 + MPMX20_02911 0.35 -0.9 3,051,595 + MPMX20_02911 0.35 -0.8 3,051,595 + MPMX20_02911 0.35 -0.5 3,051,595 + MPMX20_02911 0.35 -2.4 3,051,595 + MPMX20_02911 0.35 -3.8 3,051,595 + MPMX20_02911 0.35 -2.6 3,051,595 + MPMX20_02911 0.35 -0.7 3,051,595 + MPMX20_02911 0.35 -0.5 3,051,595 + MPMX20_02911 0.35 +0.2 3,051,595 + MPMX20_02911 0.35 +0.4 3,051,595 + MPMX20_02911 0.35 +2.6 3,051,595 + MPMX20_02911 0.35 +0.4 3,051,595 + MPMX20_02911 0.35 +0.1 3,051,595 + MPMX20_02911 0.35 +0.8 3,051,595 + MPMX20_02911 0.35 +0.3 3,051,595 + MPMX20_02911 0.35 +1.5 3,051,595 + MPMX20_02911 0.35 -0.2 3,051,595 + MPMX20_02911 0.35 +0.7 3,051,596 + MPMX20_02911 0.35 +0.6 3,051,596 + MPMX20_02911 0.35 -2.8 3,051,596 + MPMX20_02911 0.35 +0.3 3,051,596 + MPMX20_02911 0.35 -0.7 3,051,596 + MPMX20_02911 0.35 -1.7 3,051,596 + MPMX20_02911 0.35 +1.8 3,051,603 - MPMX20_02911 0.36 +0.2 3,051,603 - MPMX20_02911 0.36 +2.4 3,051,603 - MPMX20_02911 0.36 -2.1 3,051,603 - MPMX20_02911 0.36 -0.1 3,051,603 - MPMX20_02911 0.36 -1.7 3,051,603 - MPMX20_02911 0.36 +0.9 3,051,603 - MPMX20_02911 0.36 -1.8 3,051,603 - MPMX20_02911 0.36 -2.8 3,051,603 - MPMX20_02911 0.36 -2.8 3,051,603 - MPMX20_02911 0.36 -2.5 3,051,603 - MPMX20_02911 0.36 -0.6 3,051,603 - MPMX20_02911 0.36 +1.4 3,051,603 - MPMX20_02911 0.36 +1.0 3,051,603 - MPMX20_02911 0.36 +2.6 3,051,603 - MPMX20_02911 0.36 -1.8 3,051,603 - MPMX20_02911 0.36 -1.8 3,051,603 - MPMX20_02911 0.36 +0.7 3,051,604 - MPMX20_02911 0.36 +0.2 3,051,604 - MPMX20_02911 0.36 +1.4 3,051,604 - MPMX20_02911 0.36 -0.8 3,051,604 - MPMX20_02911 0.36 +3.4 3,051,608 - MPMX20_02911 0.36 -2.5 3,051,609 + MPMX20_02911 0.36 +2.4 3,051,624 + MPMX20_02911 0.38 -0.0 3,051,710 + MPMX20_02911 0.48 +0.2 3,051,718 - MPMX20_02911 0.49 +1.1 3,051,734 + MPMX20_02911 0.51 -1.6 3,051,742 - MPMX20_02911 0.52 -1.8 3,051,742 - MPMX20_02911 0.52 -1.9 3,051,762 - MPMX20_02911 0.54 -2.2 3,051,867 + MPMX20_02911 0.66 +0.2 3,051,882 + MPMX20_02911 0.68 -0.4 3,051,890 - MPMX20_02911 0.69 -0.8 3,051,907 + MPMX20_02911 0.71 -1.1 3,051,912 + MPMX20_02911 0.72 +1.0 3,051,912 + MPMX20_02911 0.72 -0.0 3,051,917 + MPMX20_02911 0.72 +1.4 3,051,917 + MPMX20_02911 0.72 +0.1 3,051,920 - MPMX20_02911 0.73 -1.5 3,051,922 + MPMX20_02911 0.73 -0.8 3,051,925 - MPMX20_02911 0.73 +0.2 3,051,925 - MPMX20_02911 0.73 -0.4 3,051,932 - MPMX20_02911 0.74 +2.5 3,051,938 - MPMX20_02911 0.75 -1.3 3,051,947 - MPMX20_02911 0.76 -1.3 3,051,983 + MPMX20_02911 0.80 +1.4 3,051,990 + MPMX20_02911 0.81 -2.1 3,051,991 - MPMX20_02911 0.81 -0.4 3,052,038 - MPMX20_02911 0.86 +0.9 3,052,040 + MPMX20_02911 0.87 -1.2 3,052,099 + -1.4 3,052,105 - -0.4 3,052,107 - -1.2 3,052,111 + +1.2 3,052,112 + -2.2 3,052,217 + -3.0 3,052,253 + +0.8 3,052,321 + MPMX20_02912 0.38 +1.2 3,052,474 + -3.6 3,052,518 + +0.5 3,052,519 + -1.8 3,052,620 + MPMX20_02913 0.55 -0.8 3,052,647 + MPMX20_02913 0.67 -0.9 3,052,650 + MPMX20_02913 0.68 -0.3 3,052,818 + -4.3 3,052,818 + +2.1
Or see this region's nucleotide sequence