Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02683 and MPMX20_02684 are separated by 23 nucleotides MPMX20_02684 and MPMX20_02685 are separated by 17 nucleotides MPMX20_02685 and MPMX20_02686 overlap by 8 nucleotides
MPMX20_02683: MPMX20_02683 - Protein YdeP, at 2,833,318 to 2,835,606
_02683
MPMX20_02684: MPMX20_02684 - Hydrogen peroxide-inducible genes activator, at 2,835,630 to 2,836,532
_02684
MPMX20_02685: MPMX20_02685 - hypothetical protein, at 2,836,550 to 2,837,302
_02685
MPMX20_02686: MPMX20_02686 - hypothetical protein, at 2,837,295 to 2,838,266
_02686
Position (kb)
2836
2837
2838 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2835.567 kb on - strand at 2835.608 kb on + strand at 2835.701 kb on + strand at 2835.701 kb on - strand at 2835.709 kb on - strand at 2835.709 kb on - strand at 2835.715 kb on + strand at 2835.750 kb on - strand, within MPMX20_02684 at 2835.794 kb on - strand, within MPMX20_02684 at 2835.866 kb on + strand, within MPMX20_02684 at 2835.866 kb on + strand, within MPMX20_02684 at 2835.866 kb on + strand, within MPMX20_02684 at 2835.888 kb on + strand, within MPMX20_02684 at 2835.889 kb on - strand, within MPMX20_02684 at 2835.901 kb on - strand, within MPMX20_02684 at 2835.934 kb on + strand, within MPMX20_02684 at 2835.942 kb on - strand, within MPMX20_02684 at 2836.053 kb on - strand, within MPMX20_02684 at 2836.238 kb on + strand, within MPMX20_02684 at 2836.250 kb on + strand, within MPMX20_02684 at 2836.320 kb on + strand, within MPMX20_02684 at 2836.362 kb on + strand, within MPMX20_02684 at 2836.396 kb on + strand, within MPMX20_02684 at 2836.398 kb on - strand, within MPMX20_02684 at 2836.473 kb on - strand at 2836.514 kb on + strand at 2836.517 kb on + strand at 2836.522 kb on - strand at 2836.564 kb on - strand at 2836.574 kb on - strand at 2836.574 kb on - strand at 2836.574 kb on - strand at 2836.578 kb on + strand at 2836.590 kb on - strand at 2836.601 kb on + strand at 2836.629 kb on - strand, within MPMX20_02685 at 2836.671 kb on + strand, within MPMX20_02685 at 2836.679 kb on - strand, within MPMX20_02685 at 2836.694 kb on - strand, within MPMX20_02685 at 2836.740 kb on - strand, within MPMX20_02685 at 2836.755 kb on - strand, within MPMX20_02685 at 2836.781 kb on + strand, within MPMX20_02685 at 2836.832 kb on - strand, within MPMX20_02685 at 2836.959 kb on + strand, within MPMX20_02685 at 2836.972 kb on + strand, within MPMX20_02685 at 2837.145 kb on + strand, within MPMX20_02685 at 2837.148 kb on - strand, within MPMX20_02685 at 2837.148 kb on - strand, within MPMX20_02685 at 2837.165 kb on + strand, within MPMX20_02685 at 2837.168 kb on - strand, within MPMX20_02685 at 2837.215 kb on + strand, within MPMX20_02685 at 2837.220 kb on + strand, within MPMX20_02685 at 2837.225 kb on + strand, within MPMX20_02685 at 2837.233 kb on - strand at 2837.238 kb on + strand at 2837.297 kb on + strand at 2837.322 kb on + strand at 2837.377 kb on + strand at 2837.383 kb on + strand at 2837.385 kb on - strand at 2837.385 kb on - strand at 2837.518 kb on + strand, within MPMX20_02686 at 2837.518 kb on + strand, within MPMX20_02686 at 2837.518 kb on + strand, within MPMX20_02686 at 2837.518 kb on + strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.538 kb on + strand, within MPMX20_02686 at 2837.615 kb on + strand, within MPMX20_02686 at 2837.638 kb on + strand, within MPMX20_02686 at 2837.641 kb on - strand, within MPMX20_02686 at 2837.656 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.737 kb on - strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.871 kb on - strand, within MPMX20_02686 at 2837.927 kb on - strand, within MPMX20_02686 at 2837.960 kb on - strand, within MPMX20_02686 at 2837.960 kb on - strand, within MPMX20_02686 at 2837.997 kb on - strand, within MPMX20_02686 at 2838.031 kb on + strand, within MPMX20_02686 at 2838.045 kb on + strand, within MPMX20_02686 at 2838.081 kb on + strand, within MPMX20_02686
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 2,835,567 - -0.8 2,835,608 + +2.3 2,835,701 + -1.0 2,835,701 - -1.2 2,835,709 - -1.3 2,835,709 - +0.9 2,835,715 + -0.1 2,835,750 - MPMX20_02684 0.13 +2.9 2,835,794 - MPMX20_02684 0.18 -0.3 2,835,866 + MPMX20_02684 0.26 -0.9 2,835,866 + MPMX20_02684 0.26 -0.3 2,835,866 + MPMX20_02684 0.26 -0.7 2,835,888 + MPMX20_02684 0.29 +0.6 2,835,889 - MPMX20_02684 0.29 -0.4 2,835,901 - MPMX20_02684 0.30 +3.8 2,835,934 + MPMX20_02684 0.34 -0.6 2,835,942 - MPMX20_02684 0.35 -0.9 2,836,053 - MPMX20_02684 0.47 +0.6 2,836,238 + MPMX20_02684 0.67 -1.9 2,836,250 + MPMX20_02684 0.69 +0.2 2,836,320 + MPMX20_02684 0.76 +0.3 2,836,362 + MPMX20_02684 0.81 +1.6 2,836,396 + MPMX20_02684 0.85 -1.7 2,836,398 - MPMX20_02684 0.85 +0.7 2,836,473 - -1.7 2,836,514 + -0.5 2,836,517 + -1.4 2,836,522 - -0.8 2,836,564 - +0.0 2,836,574 - -2.2 2,836,574 - +0.3 2,836,574 - +1.9 2,836,578 + -0.3 2,836,590 - -1.7 2,836,601 + +4.6 2,836,629 - MPMX20_02685 0.10 +1.1 2,836,671 + MPMX20_02685 0.16 +0.6 2,836,679 - MPMX20_02685 0.17 -1.8 2,836,694 - MPMX20_02685 0.19 -1.2 2,836,740 - MPMX20_02685 0.25 +4.8 2,836,755 - MPMX20_02685 0.27 -1.0 2,836,781 + MPMX20_02685 0.31 +1.6 2,836,832 - MPMX20_02685 0.37 -0.7 2,836,959 + MPMX20_02685 0.54 +0.0 2,836,972 + MPMX20_02685 0.56 -0.5 2,837,145 + MPMX20_02685 0.79 -0.2 2,837,148 - MPMX20_02685 0.79 -1.4 2,837,148 - MPMX20_02685 0.79 +0.0 2,837,165 + MPMX20_02685 0.82 +0.7 2,837,168 - MPMX20_02685 0.82 -0.3 2,837,215 + MPMX20_02685 0.88 +1.4 2,837,220 + MPMX20_02685 0.89 -0.1 2,837,225 + MPMX20_02685 0.90 +2.9 2,837,233 - -2.1 2,837,238 + +0.9 2,837,297 + +1.3 2,837,322 + -0.8 2,837,377 + -2.2 2,837,383 + -1.9 2,837,385 - -0.1 2,837,385 - -2.7 2,837,518 + MPMX20_02686 0.23 -1.0 2,837,518 + MPMX20_02686 0.23 -0.9 2,837,518 + MPMX20_02686 0.23 +1.1 2,837,518 + MPMX20_02686 0.23 -2.6 2,837,526 - MPMX20_02686 0.24 -0.8 2,837,526 - MPMX20_02686 0.24 -1.8 2,837,526 - MPMX20_02686 0.24 -1.7 2,837,526 - MPMX20_02686 0.24 -0.1 2,837,538 + MPMX20_02686 0.25 -0.7 2,837,615 + MPMX20_02686 0.33 +2.1 2,837,638 + MPMX20_02686 0.35 -1.1 2,837,641 - MPMX20_02686 0.36 -1.1 2,837,656 + MPMX20_02686 0.37 -1.1 2,837,729 + MPMX20_02686 0.45 -0.5 2,837,729 + MPMX20_02686 0.45 -0.0 2,837,729 + MPMX20_02686 0.45 +2.1 2,837,729 + MPMX20_02686 0.45 -1.8 2,837,737 - MPMX20_02686 0.45 -2.0 2,837,755 + MPMX20_02686 0.47 +2.5 2,837,755 + MPMX20_02686 0.47 -0.6 2,837,755 + MPMX20_02686 0.47 -0.6 2,837,755 + MPMX20_02686 0.47 -1.2 2,837,871 - MPMX20_02686 0.59 -0.8 2,837,927 - MPMX20_02686 0.65 +0.3 2,837,960 - MPMX20_02686 0.68 -1.0 2,837,960 - MPMX20_02686 0.68 +0.7 2,837,997 - MPMX20_02686 0.72 -0.0 2,838,031 + MPMX20_02686 0.76 +0.3 2,838,045 + MPMX20_02686 0.77 +0.3 2,838,081 + MPMX20_02686 0.81 -2.1
Or see this region's nucleotide sequence