Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02685

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02683 and MPMX20_02684 are separated by 23 nucleotidesMPMX20_02684 and MPMX20_02685 are separated by 17 nucleotidesMPMX20_02685 and MPMX20_02686 overlap by 8 nucleotides MPMX20_02683: MPMX20_02683 - Protein YdeP, at 2,833,318 to 2,835,606 _02683 MPMX20_02684: MPMX20_02684 - Hydrogen peroxide-inducible genes activator, at 2,835,630 to 2,836,532 _02684 MPMX20_02685: MPMX20_02685 - hypothetical protein, at 2,836,550 to 2,837,302 _02685 MPMX20_02686: MPMX20_02686 - hypothetical protein, at 2,837,295 to 2,838,266 _02686 Position (kb) 2836 2837 2838Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2835.567 kb on - strandat 2835.608 kb on + strandat 2835.701 kb on + strandat 2835.701 kb on - strandat 2835.709 kb on - strandat 2835.709 kb on - strandat 2835.715 kb on + strandat 2835.750 kb on - strand, within MPMX20_02684at 2835.794 kb on - strand, within MPMX20_02684at 2835.866 kb on + strand, within MPMX20_02684at 2835.866 kb on + strand, within MPMX20_02684at 2835.866 kb on + strand, within MPMX20_02684at 2835.888 kb on + strand, within MPMX20_02684at 2835.889 kb on - strand, within MPMX20_02684at 2835.901 kb on - strand, within MPMX20_02684at 2835.934 kb on + strand, within MPMX20_02684at 2835.942 kb on - strand, within MPMX20_02684at 2836.053 kb on - strand, within MPMX20_02684at 2836.238 kb on + strand, within MPMX20_02684at 2836.250 kb on + strand, within MPMX20_02684at 2836.320 kb on + strand, within MPMX20_02684at 2836.362 kb on + strand, within MPMX20_02684at 2836.396 kb on + strand, within MPMX20_02684at 2836.398 kb on - strand, within MPMX20_02684at 2836.473 kb on - strandat 2836.514 kb on + strandat 2836.517 kb on + strandat 2836.522 kb on - strandat 2836.564 kb on - strandat 2836.574 kb on - strandat 2836.574 kb on - strandat 2836.574 kb on - strandat 2836.578 kb on + strandat 2836.590 kb on - strandat 2836.601 kb on + strandat 2836.629 kb on - strand, within MPMX20_02685at 2836.671 kb on + strand, within MPMX20_02685at 2836.679 kb on - strand, within MPMX20_02685at 2836.694 kb on - strand, within MPMX20_02685at 2836.740 kb on - strand, within MPMX20_02685at 2836.755 kb on - strand, within MPMX20_02685at 2836.781 kb on + strand, within MPMX20_02685at 2836.832 kb on - strand, within MPMX20_02685at 2836.959 kb on + strand, within MPMX20_02685at 2836.972 kb on + strand, within MPMX20_02685at 2837.145 kb on + strand, within MPMX20_02685at 2837.148 kb on - strand, within MPMX20_02685at 2837.148 kb on - strand, within MPMX20_02685at 2837.165 kb on + strand, within MPMX20_02685at 2837.168 kb on - strand, within MPMX20_02685at 2837.215 kb on + strand, within MPMX20_02685at 2837.220 kb on + strand, within MPMX20_02685at 2837.225 kb on + strand, within MPMX20_02685at 2837.233 kb on - strandat 2837.238 kb on + strandat 2837.297 kb on + strandat 2837.322 kb on + strandat 2837.377 kb on + strandat 2837.383 kb on + strandat 2837.385 kb on - strandat 2837.385 kb on - strandat 2837.518 kb on + strand, within MPMX20_02686at 2837.518 kb on + strand, within MPMX20_02686at 2837.518 kb on + strand, within MPMX20_02686at 2837.518 kb on + strand, within MPMX20_02686at 2837.526 kb on - strand, within MPMX20_02686at 2837.526 kb on - strand, within MPMX20_02686at 2837.526 kb on - strand, within MPMX20_02686at 2837.526 kb on - strand, within MPMX20_02686at 2837.538 kb on + strand, within MPMX20_02686at 2837.615 kb on + strand, within MPMX20_02686at 2837.638 kb on + strand, within MPMX20_02686at 2837.641 kb on - strand, within MPMX20_02686at 2837.656 kb on + strand, within MPMX20_02686at 2837.729 kb on + strand, within MPMX20_02686at 2837.729 kb on + strand, within MPMX20_02686at 2837.729 kb on + strand, within MPMX20_02686at 2837.729 kb on + strand, within MPMX20_02686at 2837.737 kb on - strand, within MPMX20_02686at 2837.755 kb on + strand, within MPMX20_02686at 2837.755 kb on + strand, within MPMX20_02686at 2837.755 kb on + strand, within MPMX20_02686at 2837.755 kb on + strand, within MPMX20_02686at 2837.871 kb on - strand, within MPMX20_02686at 2837.927 kb on - strand, within MPMX20_02686at 2837.960 kb on - strand, within MPMX20_02686at 2837.960 kb on - strand, within MPMX20_02686at 2837.997 kb on - strand, within MPMX20_02686at 2838.031 kb on + strand, within MPMX20_02686at 2838.045 kb on + strand, within MPMX20_02686at 2838.081 kb on + strand, within MPMX20_02686

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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2,835,567 - -0.8
2,835,608 + +2.3
2,835,701 + -1.0
2,835,701 - -1.2
2,835,709 - -1.3
2,835,709 - +0.9
2,835,715 + -0.1
2,835,750 - MPMX20_02684 0.13 +2.9
2,835,794 - MPMX20_02684 0.18 -0.3
2,835,866 + MPMX20_02684 0.26 -0.9
2,835,866 + MPMX20_02684 0.26 -0.3
2,835,866 + MPMX20_02684 0.26 -0.7
2,835,888 + MPMX20_02684 0.29 +0.6
2,835,889 - MPMX20_02684 0.29 -0.4
2,835,901 - MPMX20_02684 0.30 +3.8
2,835,934 + MPMX20_02684 0.34 -0.6
2,835,942 - MPMX20_02684 0.35 -0.9
2,836,053 - MPMX20_02684 0.47 +0.6
2,836,238 + MPMX20_02684 0.67 -1.9
2,836,250 + MPMX20_02684 0.69 +0.2
2,836,320 + MPMX20_02684 0.76 +0.3
2,836,362 + MPMX20_02684 0.81 +1.6
2,836,396 + MPMX20_02684 0.85 -1.7
2,836,398 - MPMX20_02684 0.85 +0.7
2,836,473 - -1.7
2,836,514 + -0.5
2,836,517 + -1.4
2,836,522 - -0.8
2,836,564 - +0.0
2,836,574 - -2.2
2,836,574 - +0.3
2,836,574 - +1.9
2,836,578 + -0.3
2,836,590 - -1.7
2,836,601 + +4.6
2,836,629 - MPMX20_02685 0.10 +1.1
2,836,671 + MPMX20_02685 0.16 +0.6
2,836,679 - MPMX20_02685 0.17 -1.8
2,836,694 - MPMX20_02685 0.19 -1.2
2,836,740 - MPMX20_02685 0.25 +4.8
2,836,755 - MPMX20_02685 0.27 -1.0
2,836,781 + MPMX20_02685 0.31 +1.6
2,836,832 - MPMX20_02685 0.37 -0.7
2,836,959 + MPMX20_02685 0.54 +0.0
2,836,972 + MPMX20_02685 0.56 -0.5
2,837,145 + MPMX20_02685 0.79 -0.2
2,837,148 - MPMX20_02685 0.79 -1.4
2,837,148 - MPMX20_02685 0.79 +0.0
2,837,165 + MPMX20_02685 0.82 +0.7
2,837,168 - MPMX20_02685 0.82 -0.3
2,837,215 + MPMX20_02685 0.88 +1.4
2,837,220 + MPMX20_02685 0.89 -0.1
2,837,225 + MPMX20_02685 0.90 +2.9
2,837,233 - -2.1
2,837,238 + +0.9
2,837,297 + +1.3
2,837,322 + -0.8
2,837,377 + -2.2
2,837,383 + -1.9
2,837,385 - -0.1
2,837,385 - -2.7
2,837,518 + MPMX20_02686 0.23 -1.0
2,837,518 + MPMX20_02686 0.23 -0.9
2,837,518 + MPMX20_02686 0.23 +1.1
2,837,518 + MPMX20_02686 0.23 -2.6
2,837,526 - MPMX20_02686 0.24 -0.8
2,837,526 - MPMX20_02686 0.24 -1.8
2,837,526 - MPMX20_02686 0.24 -1.7
2,837,526 - MPMX20_02686 0.24 -0.1
2,837,538 + MPMX20_02686 0.25 -0.7
2,837,615 + MPMX20_02686 0.33 +2.1
2,837,638 + MPMX20_02686 0.35 -1.1
2,837,641 - MPMX20_02686 0.36 -1.1
2,837,656 + MPMX20_02686 0.37 -1.1
2,837,729 + MPMX20_02686 0.45 -0.5
2,837,729 + MPMX20_02686 0.45 -0.0
2,837,729 + MPMX20_02686 0.45 +2.1
2,837,729 + MPMX20_02686 0.45 -1.8
2,837,737 - MPMX20_02686 0.45 -2.0
2,837,755 + MPMX20_02686 0.47 +2.5
2,837,755 + MPMX20_02686 0.47 -0.6
2,837,755 + MPMX20_02686 0.47 -0.6
2,837,755 + MPMX20_02686 0.47 -1.2
2,837,871 - MPMX20_02686 0.59 -0.8
2,837,927 - MPMX20_02686 0.65 +0.3
2,837,960 - MPMX20_02686 0.68 -1.0
2,837,960 - MPMX20_02686 0.68 +0.7
2,837,997 - MPMX20_02686 0.72 -0.0
2,838,031 + MPMX20_02686 0.76 +0.3
2,838,045 + MPMX20_02686 0.77 +0.3
2,838,081 + MPMX20_02686 0.81 -2.1

Or see this region's nucleotide sequence