Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02478 and MPMX20_02479 are separated by 147 nucleotides MPMX20_02479 and MPMX20_02480 are separated by 132 nucleotides MPMX20_02480 and MPMX20_02481 are separated by 72 nucleotides MPMX20_02481 and MPMX20_02482 are separated by 52 nucleotides
MPMX20_02478: MPMX20_02478 - Putrescine export system ATP-binding protein SapF, at 2,618,455 to 2,619,261
_02478
MPMX20_02479: MPMX20_02479 - Transposon Tn10 TetC protein, at 2,619,409 to 2,619,999
_02479
MPMX20_02480: MPMX20_02480 - RutC family protein YjgH, at 2,620,132 to 2,620,527
_02480
MPMX20_02481: MPMX20_02481 - Right origin-binding protein, at 2,620,600 to 2,621,424
_02481
MPMX20_02482: MPMX20_02482 - putative diguanylate cyclase DgcT, at 2,621,477 to 2,622,832
_02482
Position (kb)
2620
2621 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 2619.132 kb on + strand, within MPMX20_02478 at 2619.150 kb on + strand, within MPMX20_02478 at 2619.327 kb on + strand at 2619.351 kb on + strand at 2619.371 kb on + strand at 2619.371 kb on + strand at 2619.371 kb on + strand at 2619.379 kb on - strand at 2619.401 kb on - strand at 2619.425 kb on - strand at 2619.485 kb on - strand, within MPMX20_02479 at 2619.491 kb on + strand, within MPMX20_02479 at 2619.491 kb on + strand, within MPMX20_02479 at 2619.499 kb on - strand, within MPMX20_02479 at 2619.499 kb on - strand, within MPMX20_02479 at 2619.501 kb on + strand, within MPMX20_02479 at 2619.514 kb on - strand, within MPMX20_02479 at 2619.567 kb on - strand, within MPMX20_02479 at 2619.600 kb on - strand, within MPMX20_02479 at 2619.614 kb on - strand, within MPMX20_02479 at 2619.632 kb on - strand, within MPMX20_02479 at 2619.646 kb on + strand, within MPMX20_02479 at 2619.646 kb on + strand, within MPMX20_02479 at 2619.646 kb on + strand, within MPMX20_02479 at 2619.646 kb on + strand, within MPMX20_02479 at 2619.654 kb on - strand, within MPMX20_02479 at 2619.654 kb on - strand, within MPMX20_02479 at 2619.655 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.672 kb on + strand, within MPMX20_02479 at 2619.680 kb on - strand, within MPMX20_02479 at 2619.680 kb on - strand, within MPMX20_02479 at 2619.680 kb on - strand, within MPMX20_02479 at 2619.712 kb on - strand, within MPMX20_02479 at 2619.842 kb on + strand, within MPMX20_02479 at 2619.850 kb on + strand, within MPMX20_02479 at 2619.866 kb on - strand, within MPMX20_02479 at 2619.871 kb on + strand, within MPMX20_02479 at 2619.903 kb on + strand, within MPMX20_02479 at 2619.915 kb on - strand, within MPMX20_02479 at 2619.929 kb on + strand, within MPMX20_02479 at 2619.974 kb on + strand at 2619.993 kb on - strand at 2619.995 kb on + strand at 2619.997 kb on + strand at 2620.096 kb on + strand at 2620.104 kb on + strand at 2620.134 kb on + strand at 2620.139 kb on + strand at 2620.140 kb on + strand at 2620.145 kb on + strand at 2620.147 kb on + strand at 2620.147 kb on + strand at 2620.147 kb on + strand at 2620.166 kb on + strand at 2620.174 kb on - strand, within MPMX20_02480 at 2620.183 kb on + strand, within MPMX20_02480 at 2620.193 kb on + strand, within MPMX20_02480 at 2620.198 kb on + strand, within MPMX20_02480 at 2620.201 kb on - strand, within MPMX20_02480 at 2620.234 kb on + strand, within MPMX20_02480 at 2620.239 kb on + strand, within MPMX20_02480 at 2620.239 kb on + strand, within MPMX20_02480 at 2620.239 kb on + strand, within MPMX20_02480 at 2620.239 kb on + strand, within MPMX20_02480 at 2620.242 kb on - strand, within MPMX20_02480 at 2620.242 kb on - strand, within MPMX20_02480 at 2620.248 kb on - strand, within MPMX20_02480 at 2620.248 kb on - strand, within MPMX20_02480 at 2620.273 kb on + strand, within MPMX20_02480 at 2620.273 kb on + strand, within MPMX20_02480 at 2620.287 kb on + strand, within MPMX20_02480 at 2620.287 kb on + strand, within MPMX20_02480 at 2620.295 kb on - strand, within MPMX20_02480 at 2620.308 kb on + strand, within MPMX20_02480 at 2620.308 kb on + strand, within MPMX20_02480 at 2620.308 kb on + strand, within MPMX20_02480 at 2620.316 kb on - strand, within MPMX20_02480 at 2620.328 kb on - strand, within MPMX20_02480 at 2620.332 kb on + strand, within MPMX20_02480 at 2620.335 kb on + strand, within MPMX20_02480 at 2620.348 kb on + strand, within MPMX20_02480 at 2620.368 kb on + strand, within MPMX20_02480 at 2620.368 kb on + strand, within MPMX20_02480 at 2620.369 kb on + strand, within MPMX20_02480 at 2620.430 kb on + strand, within MPMX20_02480 at 2620.436 kb on + strand, within MPMX20_02480 at 2620.436 kb on + strand, within MPMX20_02480 at 2620.437 kb on + strand, within MPMX20_02480 at 2620.441 kb on + strand, within MPMX20_02480 at 2620.441 kb on + strand, within MPMX20_02480 at 2620.441 kb on + strand, within MPMX20_02480 at 2620.441 kb on + strand, within MPMX20_02480 at 2620.441 kb on + strand, within MPMX20_02480 at 2620.446 kb on + strand, within MPMX20_02480 at 2620.449 kb on + strand, within MPMX20_02480 at 2620.449 kb on + strand, within MPMX20_02480 at 2620.449 kb on + strand, within MPMX20_02480 at 2620.451 kb on + strand, within MPMX20_02480 at 2620.451 kb on + strand, within MPMX20_02480 at 2620.456 kb on + strand, within MPMX20_02480 at 2620.462 kb on + strand, within MPMX20_02480 at 2620.462 kb on + strand, within MPMX20_02480 at 2620.463 kb on + strand, within MPMX20_02480 at 2620.467 kb on + strand, within MPMX20_02480 at 2620.467 kb on + strand, within MPMX20_02480 at 2620.472 kb on + strand, within MPMX20_02480 at 2620.472 kb on + strand, within MPMX20_02480 at 2620.507 kb on + strand at 2620.533 kb on + strand at 2620.533 kb on + strand at 2620.579 kb on + strand at 2620.698 kb on - strand, within MPMX20_02481 at 2620.748 kb on - strand, within MPMX20_02481 at 2620.771 kb on - strand, within MPMX20_02481 at 2621.037 kb on - strand, within MPMX20_02481 at 2621.131 kb on - strand, within MPMX20_02481 at 2621.131 kb on - strand, within MPMX20_02481 at 2621.136 kb on - strand, within MPMX20_02481 at 2621.136 kb on - strand, within MPMX20_02481 at 2621.271 kb on - strand, within MPMX20_02481 at 2621.281 kb on - strand, within MPMX20_02481 at 2621.281 kb on - strand, within MPMX20_02481 at 2621.281 kb on - strand, within MPMX20_02481 at 2621.281 kb on - strand, within MPMX20_02481 at 2621.318 kb on - strand, within MPMX20_02481 at 2621.318 kb on - strand, within MPMX20_02481 at 2621.318 kb on - strand, within MPMX20_02481 at 2621.318 kb on - strand, within MPMX20_02481 at 2621.323 kb on - strand, within MPMX20_02481 at 2621.331 kb on - strand, within MPMX20_02481 at 2621.339 kb on - strand, within MPMX20_02481 at 2621.341 kb on - strand, within MPMX20_02481 at 2621.341 kb on - strand, within MPMX20_02481 at 2621.341 kb on - strand, within MPMX20_02481 at 2621.341 kb on - strand, within MPMX20_02481 at 2621.351 kb on - strand at 2621.364 kb on - strand at 2621.426 kb on - strand at 2621.427 kb on - strand at 2621.427 kb on - strand at 2621.427 kb on - strand at 2621.449 kb on - strand at 2621.462 kb on - strand at 2621.472 kb on - strand at 2621.472 kb on - strand at 2621.472 kb on - strand at 2621.472 kb on - strand at 2621.480 kb on + strand at 2621.480 kb on + strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.483 kb on - strand at 2621.488 kb on - strand at 2621.488 kb on - strand at 2621.493 kb on - strand at 2621.494 kb on - strand at 2621.494 kb on - strand at 2621.506 kb on - strand at 2621.513 kb on + strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.516 kb on - strand at 2621.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 2,619,132 + MPMX20_02478 0.84 -0.7 2,619,150 + MPMX20_02478 0.86 -0.4 2,619,327 + -1.9 2,619,351 + -0.8 2,619,371 + +1.1 2,619,371 + +1.6 2,619,371 + -1.6 2,619,379 - -1.0 2,619,401 - +3.6 2,619,425 - +0.7 2,619,485 - MPMX20_02479 0.13 +0.1 2,619,491 + MPMX20_02479 0.14 -1.2 2,619,491 + MPMX20_02479 0.14 -2.4 2,619,499 - MPMX20_02479 0.15 -1.6 2,619,499 - MPMX20_02479 0.15 +0.8 2,619,501 + MPMX20_02479 0.16 -0.9 2,619,514 - MPMX20_02479 0.18 +2.4 2,619,567 - MPMX20_02479 0.27 +0.2 2,619,600 - MPMX20_02479 0.32 -0.4 2,619,614 - MPMX20_02479 0.35 -0.6 2,619,632 - MPMX20_02479 0.38 +0.6 2,619,646 + MPMX20_02479 0.40 -1.6 2,619,646 + MPMX20_02479 0.40 -1.0 2,619,646 + MPMX20_02479 0.40 +0.1 2,619,646 + MPMX20_02479 0.40 -1.0 2,619,654 - MPMX20_02479 0.41 -1.0 2,619,654 - MPMX20_02479 0.41 +0.1 2,619,655 + MPMX20_02479 0.42 +0.6 2,619,672 + MPMX20_02479 0.45 -3.0 2,619,672 + MPMX20_02479 0.45 +1.0 2,619,672 + MPMX20_02479 0.45 -2.3 2,619,672 + MPMX20_02479 0.45 -2.4 2,619,672 + MPMX20_02479 0.45 -2.5 2,619,672 + MPMX20_02479 0.45 -0.6 2,619,672 + MPMX20_02479 0.45 -1.2 2,619,680 - MPMX20_02479 0.46 -4.0 2,619,680 - MPMX20_02479 0.46 -0.0 2,619,680 - MPMX20_02479 0.46 -1.1 2,619,712 - MPMX20_02479 0.51 +2.7 2,619,842 + MPMX20_02479 0.73 -0.6 2,619,850 + MPMX20_02479 0.75 -0.5 2,619,866 - MPMX20_02479 0.77 +0.2 2,619,871 + MPMX20_02479 0.78 -1.4 2,619,903 + MPMX20_02479 0.84 -1.4 2,619,915 - MPMX20_02479 0.86 -1.4 2,619,929 + MPMX20_02479 0.88 +2.0 2,619,974 + -0.6 2,619,993 - +0.9 2,619,995 + -0.4 2,619,997 + -2.6 2,620,096 + -2.5 2,620,104 + +0.2 2,620,134 + -0.5 2,620,139 + +1.0 2,620,140 + -0.9 2,620,145 + +1.4 2,620,147 + -0.2 2,620,147 + +2.9 2,620,147 + +0.4 2,620,166 + -1.1 2,620,174 - MPMX20_02480 0.11 -2.5 2,620,183 + MPMX20_02480 0.13 +1.0 2,620,193 + MPMX20_02480 0.15 -0.4 2,620,198 + MPMX20_02480 0.17 -2.2 2,620,201 - MPMX20_02480 0.17 -1.1 2,620,234 + MPMX20_02480 0.26 +8.7 2,620,239 + MPMX20_02480 0.27 +0.3 2,620,239 + MPMX20_02480 0.27 -0.4 2,620,239 + MPMX20_02480 0.27 +2.9 2,620,239 + MPMX20_02480 0.27 -1.0 2,620,242 - MPMX20_02480 0.28 -0.3 2,620,242 - MPMX20_02480 0.28 -0.4 2,620,248 - MPMX20_02480 0.29 +0.9 2,620,248 - MPMX20_02480 0.29 +0.8 2,620,273 + MPMX20_02480 0.36 -2.5 2,620,273 + MPMX20_02480 0.36 -0.4 2,620,287 + MPMX20_02480 0.39 +0.4 2,620,287 + MPMX20_02480 0.39 -0.2 2,620,295 - MPMX20_02480 0.41 +0.9 2,620,308 + MPMX20_02480 0.44 +2.2 2,620,308 + MPMX20_02480 0.44 -0.0 2,620,308 + MPMX20_02480 0.44 -2.1 2,620,316 - MPMX20_02480 0.46 -2.0 2,620,328 - MPMX20_02480 0.49 +2.9 2,620,332 + MPMX20_02480 0.51 -1.6 2,620,335 + MPMX20_02480 0.51 +1.4 2,620,348 + MPMX20_02480 0.55 -3.9 2,620,368 + MPMX20_02480 0.60 -0.4 2,620,368 + MPMX20_02480 0.60 +1.9 2,620,369 + MPMX20_02480 0.60 -0.8 2,620,430 + MPMX20_02480 0.75 +0.2 2,620,436 + MPMX20_02480 0.77 +1.3 2,620,436 + MPMX20_02480 0.77 +1.0 2,620,437 + MPMX20_02480 0.77 +0.6 2,620,441 + MPMX20_02480 0.78 -1.2 2,620,441 + MPMX20_02480 0.78 -3.1 2,620,441 + MPMX20_02480 0.78 +1.6 2,620,441 + MPMX20_02480 0.78 +0.0 2,620,441 + MPMX20_02480 0.78 -2.5 2,620,446 + MPMX20_02480 0.79 +2.1 2,620,449 + MPMX20_02480 0.80 +1.3 2,620,449 + MPMX20_02480 0.80 -1.5 2,620,449 + MPMX20_02480 0.80 +2.2 2,620,451 + MPMX20_02480 0.81 -1.0 2,620,451 + MPMX20_02480 0.81 -2.4 2,620,456 + MPMX20_02480 0.82 -0.1 2,620,462 + MPMX20_02480 0.83 +1.7 2,620,462 + MPMX20_02480 0.83 -0.1 2,620,463 + MPMX20_02480 0.84 -1.2 2,620,467 + MPMX20_02480 0.85 -1.6 2,620,467 + MPMX20_02480 0.85 +2.7 2,620,472 + MPMX20_02480 0.86 +1.3 2,620,472 + MPMX20_02480 0.86 -0.1 2,620,507 + +3.9 2,620,533 + +1.9 2,620,533 + +0.6 2,620,579 + -1.1 2,620,698 - MPMX20_02481 0.12 +0.3 2,620,748 - MPMX20_02481 0.18 +2.9 2,620,771 - MPMX20_02481 0.21 -1.8 2,621,037 - MPMX20_02481 0.53 +1.9 2,621,131 - MPMX20_02481 0.64 +0.6 2,621,131 - MPMX20_02481 0.64 +1.9 2,621,136 - MPMX20_02481 0.65 +0.9 2,621,136 - MPMX20_02481 0.65 +0.1 2,621,271 - MPMX20_02481 0.81 +0.3 2,621,281 - MPMX20_02481 0.83 +2.1 2,621,281 - MPMX20_02481 0.83 +0.7 2,621,281 - MPMX20_02481 0.83 -1.7 2,621,281 - MPMX20_02481 0.83 +0.3 2,621,318 - MPMX20_02481 0.87 +0.1 2,621,318 - MPMX20_02481 0.87 -0.8 2,621,318 - MPMX20_02481 0.87 +0.9 2,621,318 - MPMX20_02481 0.87 +1.9 2,621,323 - MPMX20_02481 0.88 +0.6 2,621,331 - MPMX20_02481 0.89 +0.5 2,621,339 - MPMX20_02481 0.90 -1.6 2,621,341 - MPMX20_02481 0.90 -0.1 2,621,341 - MPMX20_02481 0.90 +0.5 2,621,341 - MPMX20_02481 0.90 -0.1 2,621,341 - MPMX20_02481 0.90 -1.2 2,621,351 - -2.1 2,621,364 - +0.9 2,621,426 - +0.3 2,621,427 - +1.3 2,621,427 - -2.7 2,621,427 - -1.6 2,621,449 - +2.2 2,621,462 - -1.7 2,621,472 - +1.9 2,621,472 - -0.6 2,621,472 - +0.4 2,621,472 - -0.4 2,621,480 + -2.4 2,621,480 + +1.3 2,621,483 - -1.4 2,621,483 - -0.7 2,621,483 - -2.2 2,621,483 - -0.8 2,621,483 - +0.5 2,621,483 - -2.5 2,621,483 - +1.9 2,621,483 - -1.2 2,621,488 - -1.4 2,621,488 - -0.2 2,621,493 - +1.6 2,621,494 - -1.7 2,621,494 - -0.6 2,621,506 - +1.1 2,621,513 + +1.0 2,621,516 - -0.2 2,621,516 - +0.6 2,621,516 - -0.0 2,621,516 - -2.7 2,621,516 - +1.0 2,621,516 - +1.3 2,621,516 - +0.6 2,621,516 - +0.9 2,621,516 - +0.2 2,621,521 - -0.4
Or see this region's nucleotide sequence