Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02273 and MPMX20_02274 are separated by 109 nucleotides MPMX20_02274 and MPMX20_02275 are separated by 82 nucleotides MPMX20_02275 and MPMX20_02276 are separated by 117 nucleotides
MPMX20_02273: MPMX20_02273 - hypothetical protein, at 2,383,905 to 2,385,350
_02273
MPMX20_02274: MPMX20_02274 - hypothetical protein, at 2,385,460 to 2,386,425
_02274
MPMX20_02275: MPMX20_02275 - Acetyltransferase, at 2,386,508 to 2,387,035
_02275
MPMX20_02276: MPMX20_02276 - Altronate oxidoreductase, at 2,387,153 to 2,388,604
_02276
Position (kb)
2385
2386
2387 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2384.463 kb on - strand, within MPMX20_02273 at 2384.466 kb on + strand, within MPMX20_02273 at 2384.475 kb on - strand, within MPMX20_02273 at 2384.480 kb on + strand, within MPMX20_02273 at 2384.520 kb on + strand, within MPMX20_02273 at 2384.548 kb on + strand, within MPMX20_02273 at 2384.572 kb on + strand, within MPMX20_02273 at 2384.639 kb on - strand, within MPMX20_02273 at 2384.753 kb on - strand, within MPMX20_02273 at 2385.020 kb on - strand, within MPMX20_02273 at 2385.057 kb on + strand, within MPMX20_02273 at 2385.073 kb on - strand, within MPMX20_02273 at 2385.085 kb on + strand, within MPMX20_02273 at 2385.085 kb on + strand, within MPMX20_02273 at 2385.093 kb on - strand, within MPMX20_02273 at 2385.174 kb on + strand, within MPMX20_02273 at 2385.174 kb on + strand, within MPMX20_02273 at 2385.174 kb on + strand, within MPMX20_02273 at 2385.174 kb on + strand, within MPMX20_02273 at 2385.174 kb on + strand, within MPMX20_02273 at 2385.177 kb on - strand, within MPMX20_02273 at 2385.182 kb on - strand, within MPMX20_02273 at 2385.182 kb on - strand, within MPMX20_02273 at 2385.235 kb on - strand at 2385.289 kb on + strand at 2385.297 kb on - strand at 2385.311 kb on + strand at 2385.394 kb on - strand at 2385.396 kb on + strand at 2385.412 kb on + strand at 2385.515 kb on + strand at 2385.523 kb on - strand at 2385.523 kb on - strand at 2385.523 kb on - strand at 2385.523 kb on - strand at 2385.523 kb on - strand at 2385.533 kb on - strand at 2385.662 kb on + strand, within MPMX20_02274 at 2385.703 kb on - strand, within MPMX20_02274 at 2385.914 kb on - strand, within MPMX20_02274 at 2386.007 kb on + strand, within MPMX20_02274 at 2386.015 kb on - strand, within MPMX20_02274 at 2386.015 kb on - strand, within MPMX20_02274 at 2386.042 kb on - strand, within MPMX20_02274 at 2386.051 kb on - strand, within MPMX20_02274 at 2386.056 kb on - strand, within MPMX20_02274 at 2386.063 kb on + strand, within MPMX20_02274 at 2386.073 kb on + strand, within MPMX20_02274 at 2386.111 kb on + strand, within MPMX20_02274 at 2386.171 kb on - strand, within MPMX20_02274 at 2386.204 kb on - strand, within MPMX20_02274 at 2386.233 kb on + strand, within MPMX20_02274 at 2386.243 kb on - strand, within MPMX20_02274 at 2386.259 kb on - strand, within MPMX20_02274 at 2386.306 kb on + strand, within MPMX20_02274 at 2386.341 kb on + strand at 2386.362 kb on - strand at 2386.372 kb on - strand at 2386.372 kb on - strand at 2386.430 kb on + strand at 2386.444 kb on - strand at 2386.515 kb on + strand at 2386.517 kb on + strand at 2386.617 kb on + strand, within MPMX20_02275 at 2386.625 kb on - strand, within MPMX20_02275 at 2386.705 kb on + strand, within MPMX20_02275 at 2386.748 kb on - strand, within MPMX20_02275 at 2386.838 kb on - strand, within MPMX20_02275 at 2386.867 kb on + strand, within MPMX20_02275 at 2386.937 kb on - strand, within MPMX20_02275 at 2387.158 kb on - strand at 2387.168 kb on - strand at 2387.183 kb on + strand at 2387.191 kb on - strand at 2387.350 kb on - strand, within MPMX20_02276 at 2387.351 kb on + strand, within MPMX20_02276 at 2387.361 kb on - strand, within MPMX20_02276 at 2387.411 kb on + strand, within MPMX20_02276
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 2,384,463 - MPMX20_02273 0.39 +0.7 2,384,466 + MPMX20_02273 0.39 -0.7 2,384,475 - MPMX20_02273 0.39 -0.1 2,384,480 + MPMX20_02273 0.40 -3.4 2,384,520 + MPMX20_02273 0.43 -0.3 2,384,548 + MPMX20_02273 0.44 -0.4 2,384,572 + MPMX20_02273 0.46 -1.9 2,384,639 - MPMX20_02273 0.51 -2.1 2,384,753 - MPMX20_02273 0.59 -0.0 2,385,020 - MPMX20_02273 0.77 +1.4 2,385,057 + MPMX20_02273 0.80 +0.3 2,385,073 - MPMX20_02273 0.81 -0.1 2,385,085 + MPMX20_02273 0.82 -1.9 2,385,085 + MPMX20_02273 0.82 +0.8 2,385,093 - MPMX20_02273 0.82 +1.0 2,385,174 + MPMX20_02273 0.88 -0.8 2,385,174 + MPMX20_02273 0.88 -0.8 2,385,174 + MPMX20_02273 0.88 +0.4 2,385,174 + MPMX20_02273 0.88 +0.6 2,385,174 + MPMX20_02273 0.88 -1.6 2,385,177 - MPMX20_02273 0.88 -0.6 2,385,182 - MPMX20_02273 0.88 -2.8 2,385,182 - MPMX20_02273 0.88 -0.2 2,385,235 - -1.2 2,385,289 + +2.4 2,385,297 - -0.2 2,385,311 + -1.0 2,385,394 - -3.8 2,385,396 + +4.1 2,385,412 + -1.8 2,385,515 + +0.0 2,385,523 - -0.2 2,385,523 - -0.8 2,385,523 - +0.3 2,385,523 - +1.6 2,385,523 - +0.5 2,385,533 - -1.4 2,385,662 + MPMX20_02274 0.21 +0.6 2,385,703 - MPMX20_02274 0.25 +1.9 2,385,914 - MPMX20_02274 0.47 -2.4 2,386,007 + MPMX20_02274 0.57 -0.1 2,386,015 - MPMX20_02274 0.57 +0.6 2,386,015 - MPMX20_02274 0.57 +0.6 2,386,042 - MPMX20_02274 0.60 +2.2 2,386,051 - MPMX20_02274 0.61 +0.9 2,386,056 - MPMX20_02274 0.62 +2.4 2,386,063 + MPMX20_02274 0.62 +5.1 2,386,073 + MPMX20_02274 0.63 -1.4 2,386,111 + MPMX20_02274 0.67 -1.6 2,386,171 - MPMX20_02274 0.74 -0.8 2,386,204 - MPMX20_02274 0.77 -0.7 2,386,233 + MPMX20_02274 0.80 -2.7 2,386,243 - MPMX20_02274 0.81 +0.8 2,386,259 - MPMX20_02274 0.83 +0.6 2,386,306 + MPMX20_02274 0.88 +1.3 2,386,341 + +0.9 2,386,362 - -0.8 2,386,372 - +1.3 2,386,372 - -0.7 2,386,430 + +2.5 2,386,444 - +1.4 2,386,515 + +0.0 2,386,517 + -0.7 2,386,617 + MPMX20_02275 0.21 -1.7 2,386,625 - MPMX20_02275 0.22 +2.4 2,386,705 + MPMX20_02275 0.37 -1.1 2,386,748 - MPMX20_02275 0.45 +2.8 2,386,838 - MPMX20_02275 0.62 +3.9 2,386,867 + MPMX20_02275 0.68 -0.9 2,386,937 - MPMX20_02275 0.81 +0.5 2,387,158 - +2.8 2,387,168 - -0.8 2,387,183 + +0.3 2,387,191 - -1.3 2,387,350 - MPMX20_02276 0.14 +0.6 2,387,351 + MPMX20_02276 0.14 +0.5 2,387,361 - MPMX20_02276 0.14 -0.4 2,387,411 + MPMX20_02276 0.18 -1.3
Or see this region's nucleotide sequence