Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02262 and MPMX20_02263 are separated by 177 nucleotides MPMX20_02263 and MPMX20_02264 are separated by 27 nucleotides MPMX20_02264 and MPMX20_02265 are separated by 51 nucleotides
MPMX20_02262: MPMX20_02262 - Sugar efflux transporter, at 2,372,868 to 2,374,064
_02262
MPMX20_02263: MPMX20_02263 - hypothetical protein, at 2,374,242 to 2,375,030
_02263
MPMX20_02264: MPMX20_02264 - hypothetical protein, at 2,375,058 to 2,375,858
_02264
MPMX20_02265: MPMX20_02265 - hypothetical protein, at 2,375,910 to 2,376,872
_02265
Position (kb)
2374
2375
2376 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2373.247 kb on - strand, within MPMX20_02262 at 2373.287 kb on - strand, within MPMX20_02262 at 2373.365 kb on + strand, within MPMX20_02262 at 2373.368 kb on + strand, within MPMX20_02262 at 2373.375 kb on + strand, within MPMX20_02262 at 2373.383 kb on - strand, within MPMX20_02262 at 2373.383 kb on - strand, within MPMX20_02262 at 2373.384 kb on + strand, within MPMX20_02262 at 2373.384 kb on + strand, within MPMX20_02262 at 2373.385 kb on + strand, within MPMX20_02262 at 2373.393 kb on - strand, within MPMX20_02262 at 2373.606 kb on + strand, within MPMX20_02262 at 2373.606 kb on + strand, within MPMX20_02262 at 2373.614 kb on - strand, within MPMX20_02262 at 2373.614 kb on - strand, within MPMX20_02262 at 2373.711 kb on + strand, within MPMX20_02262 at 2373.839 kb on + strand, within MPMX20_02262 at 2373.857 kb on + strand, within MPMX20_02262 at 2373.873 kb on + strand, within MPMX20_02262 at 2373.873 kb on + strand, within MPMX20_02262 at 2373.895 kb on - strand, within MPMX20_02262 at 2373.900 kb on + strand, within MPMX20_02262 at 2373.905 kb on + strand, within MPMX20_02262 at 2373.905 kb on + strand, within MPMX20_02262 at 2373.908 kb on - strand, within MPMX20_02262 at 2373.910 kb on + strand, within MPMX20_02262 at 2373.913 kb on - strand, within MPMX20_02262 at 2373.970 kb on - strand at 2374.043 kb on + strand at 2374.049 kb on - strand at 2374.347 kb on + strand, within MPMX20_02263 at 2374.347 kb on - strand, within MPMX20_02263 at 2374.357 kb on - strand, within MPMX20_02263 at 2374.362 kb on - strand, within MPMX20_02263 at 2374.367 kb on + strand, within MPMX20_02263 at 2374.424 kb on - strand, within MPMX20_02263 at 2374.451 kb on + strand, within MPMX20_02263 at 2374.479 kb on + strand, within MPMX20_02263 at 2374.487 kb on - strand, within MPMX20_02263 at 2374.510 kb on - strand, within MPMX20_02263 at 2374.555 kb on - strand, within MPMX20_02263 at 2374.679 kb on + strand, within MPMX20_02263 at 2374.712 kb on + strand, within MPMX20_02263 at 2374.845 kb on - strand, within MPMX20_02263 at 2374.850 kb on + strand, within MPMX20_02263 at 2374.858 kb on - strand, within MPMX20_02263 at 2374.919 kb on - strand, within MPMX20_02263 at 2374.925 kb on + strand, within MPMX20_02263 at 2374.944 kb on + strand, within MPMX20_02263 at 2374.944 kb on + strand, within MPMX20_02263 at 2374.950 kb on - strand, within MPMX20_02263 at 2374.966 kb on - strand at 2374.991 kb on + strand at 2374.992 kb on + strand at 2374.995 kb on - strand at 2375.046 kb on + strand at 2375.056 kb on - strand at 2375.163 kb on + strand, within MPMX20_02264 at 2375.171 kb on - strand, within MPMX20_02264 at 2375.173 kb on - strand, within MPMX20_02264 at 2375.178 kb on - strand, within MPMX20_02264 at 2375.178 kb on - strand, within MPMX20_02264 at 2375.214 kb on + strand, within MPMX20_02264 at 2375.227 kb on + strand, within MPMX20_02264 at 2375.260 kb on + strand, within MPMX20_02264 at 2375.268 kb on - strand, within MPMX20_02264 at 2375.278 kb on - strand, within MPMX20_02264 at 2375.283 kb on + strand, within MPMX20_02264 at 2375.397 kb on + strand, within MPMX20_02264 at 2375.413 kb on - strand, within MPMX20_02264 at 2375.534 kb on + strand, within MPMX20_02264 at 2375.535 kb on + strand, within MPMX20_02264 at 2375.576 kb on + strand, within MPMX20_02264 at 2375.582 kb on + strand, within MPMX20_02264 at 2375.584 kb on - strand, within MPMX20_02264 at 2375.652 kb on - strand, within MPMX20_02264 at 2375.763 kb on + strand, within MPMX20_02264 at 2375.825 kb on - strand at 2375.837 kb on - strand at 2375.847 kb on - strand at 2375.910 kb on - strand at 2375.912 kb on + strand at 2375.966 kb on + strand at 2375.966 kb on + strand at 2375.974 kb on - strand at 2375.974 kb on - strand at 2375.974 kb on - strand at 2375.981 kb on + strand at 2375.981 kb on + strand at 2375.989 kb on + strand at 2375.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 2,373,247 - MPMX20_02262 0.32 -0.8 2,373,287 - MPMX20_02262 0.35 +0.6 2,373,365 + MPMX20_02262 0.42 +1.8 2,373,368 + MPMX20_02262 0.42 +0.0 2,373,375 + MPMX20_02262 0.42 +0.4 2,373,383 - MPMX20_02262 0.43 +1.8 2,373,383 - MPMX20_02262 0.43 +0.8 2,373,384 + MPMX20_02262 0.43 +1.5 2,373,384 + MPMX20_02262 0.43 -0.6 2,373,385 + MPMX20_02262 0.43 -0.5 2,373,393 - MPMX20_02262 0.44 -0.8 2,373,606 + MPMX20_02262 0.62 +1.0 2,373,606 + MPMX20_02262 0.62 -1.0 2,373,614 - MPMX20_02262 0.62 -0.7 2,373,614 - MPMX20_02262 0.62 -1.2 2,373,711 + MPMX20_02262 0.70 +1.5 2,373,839 + MPMX20_02262 0.81 -0.9 2,373,857 + MPMX20_02262 0.83 +0.6 2,373,873 + MPMX20_02262 0.84 -1.6 2,373,873 + MPMX20_02262 0.84 +1.8 2,373,895 - MPMX20_02262 0.86 -1.4 2,373,900 + MPMX20_02262 0.86 +0.2 2,373,905 + MPMX20_02262 0.87 +0.4 2,373,905 + MPMX20_02262 0.87 -1.0 2,373,908 - MPMX20_02262 0.87 -0.7 2,373,910 + MPMX20_02262 0.87 -2.6 2,373,913 - MPMX20_02262 0.87 +1.2 2,373,970 - -0.6 2,374,043 + -0.7 2,374,049 - -2.4 2,374,347 + MPMX20_02263 0.13 +0.2 2,374,347 - MPMX20_02263 0.13 +1.0 2,374,357 - MPMX20_02263 0.15 +1.2 2,374,362 - MPMX20_02263 0.15 -1.6 2,374,367 + MPMX20_02263 0.16 -2.5 2,374,424 - MPMX20_02263 0.23 -0.0 2,374,451 + MPMX20_02263 0.26 +0.2 2,374,479 + MPMX20_02263 0.30 -0.6 2,374,487 - MPMX20_02263 0.31 +1.2 2,374,510 - MPMX20_02263 0.34 -1.7 2,374,555 - MPMX20_02263 0.40 -0.8 2,374,679 + MPMX20_02263 0.55 +0.6 2,374,712 + MPMX20_02263 0.60 +1.6 2,374,845 - MPMX20_02263 0.76 -1.3 2,374,850 + MPMX20_02263 0.77 +4.5 2,374,858 - MPMX20_02263 0.78 -1.8 2,374,919 - MPMX20_02263 0.86 -0.4 2,374,925 + MPMX20_02263 0.87 +1.0 2,374,944 + MPMX20_02263 0.89 -1.1 2,374,944 + MPMX20_02263 0.89 +2.0 2,374,950 - MPMX20_02263 0.90 -1.4 2,374,966 - -0.7 2,374,991 + -3.1 2,374,992 + -1.9 2,374,995 - -0.4 2,375,046 + -2.9 2,375,056 - -0.2 2,375,163 + MPMX20_02264 0.13 -0.5 2,375,171 - MPMX20_02264 0.14 +0.6 2,375,173 - MPMX20_02264 0.14 -0.6 2,375,178 - MPMX20_02264 0.15 -2.3 2,375,178 - MPMX20_02264 0.15 -0.8 2,375,214 + MPMX20_02264 0.19 +0.2 2,375,227 + MPMX20_02264 0.21 -2.2 2,375,260 + MPMX20_02264 0.25 +0.8 2,375,268 - MPMX20_02264 0.26 +0.1 2,375,278 - MPMX20_02264 0.27 -2.7 2,375,283 + MPMX20_02264 0.28 -1.0 2,375,397 + MPMX20_02264 0.42 +1.2 2,375,413 - MPMX20_02264 0.44 +0.7 2,375,534 + MPMX20_02264 0.59 -0.6 2,375,535 + MPMX20_02264 0.60 -0.5 2,375,576 + MPMX20_02264 0.65 +1.8 2,375,582 + MPMX20_02264 0.65 -0.3 2,375,584 - MPMX20_02264 0.66 -2.4 2,375,652 - MPMX20_02264 0.74 +1.5 2,375,763 + MPMX20_02264 0.88 +0.1 2,375,825 - +1.0 2,375,837 - -1.6 2,375,847 - -0.6 2,375,910 - -0.6 2,375,912 + +0.8 2,375,966 + -0.8 2,375,966 + -1.6 2,375,974 - -1.5 2,375,974 - -1.1 2,375,974 - -0.5 2,375,981 + -1.6 2,375,981 + -2.6 2,375,989 + +0.5 2,375,990 - -2.0
Or see this region's nucleotide sequence