Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01990

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01988 and MPMX20_01989 are separated by 149 nucleotidesMPMX20_01989 and MPMX20_01990 are separated by 48 nucleotidesMPMX20_01990 and MPMX20_01991 are separated by 79 nucleotidesMPMX20_01991 and MPMX20_01992 overlap by 22 nucleotides MPMX20_01988: MPMX20_01988 - Phosphoethanolamine transferase EptA, at 2,077,950 to 2,079,575 _01988 MPMX20_01989: MPMX20_01989 - hypothetical protein, at 2,079,725 to 2,079,964 _01989 MPMX20_01990: MPMX20_01990 - Oxidoreductase YdhF, at 2,080,013 to 2,080,909 _01990 MPMX20_01991: MPMX20_01991 - Superoxide dismutase [Cu-Zn], at 2,080,989 to 2,081,507 _01991 MPMX20_01992: MPMX20_01992 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 2,081,486 to 2,083,519 _01992 Position (kb) 2080 2081Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2079.058 kb on + strand, within MPMX20_01988at 2079.105 kb on - strand, within MPMX20_01988at 2079.160 kb on - strand, within MPMX20_01988at 2079.190 kb on - strand, within MPMX20_01988at 2079.225 kb on + strand, within MPMX20_01988at 2079.233 kb on - strand, within MPMX20_01988at 2079.238 kb on - strand, within MPMX20_01988at 2079.271 kb on + strand, within MPMX20_01988at 2079.345 kb on + strand, within MPMX20_01988at 2079.518 kb on + strandat 2079.525 kb on + strandat 2079.533 kb on - strandat 2079.550 kb on + strandat 2079.618 kb on - strandat 2079.644 kb on - strandat 2079.686 kb on - strandat 2079.721 kb on + strandat 2079.721 kb on + strandat 2079.750 kb on - strand, within MPMX20_01989at 2079.782 kb on - strand, within MPMX20_01989at 2079.845 kb on + strand, within MPMX20_01989at 2079.864 kb on + strand, within MPMX20_01989at 2079.975 kb on - strandat 2079.981 kb on + strandat 2079.992 kb on - strandat 2080.078 kb on - strandat 2080.078 kb on - strandat 2080.104 kb on + strand, within MPMX20_01990at 2080.141 kb on - strand, within MPMX20_01990at 2080.148 kb on - strand, within MPMX20_01990at 2080.189 kb on + strand, within MPMX20_01990at 2080.320 kb on + strand, within MPMX20_01990at 2080.328 kb on - strand, within MPMX20_01990at 2080.346 kb on - strand, within MPMX20_01990at 2080.348 kb on + strand, within MPMX20_01990at 2080.481 kb on + strand, within MPMX20_01990at 2080.518 kb on + strand, within MPMX20_01990at 2080.531 kb on - strand, within MPMX20_01990at 2080.531 kb on - strand, within MPMX20_01990at 2080.535 kb on + strand, within MPMX20_01990at 2080.560 kb on - strand, within MPMX20_01990at 2080.671 kb on - strand, within MPMX20_01990at 2080.739 kb on + strand, within MPMX20_01990at 2080.744 kb on + strand, within MPMX20_01990at 2080.891 kb on + strandat 2080.899 kb on - strandat 2080.899 kb on - strandat 2080.899 kb on - strandat 2080.937 kb on + strandat 2080.948 kb on + strandat 2080.996 kb on + strandat 2081.032 kb on - strandat 2081.032 kb on - strandat 2081.037 kb on - strandat 2081.077 kb on + strand, within MPMX20_01991at 2081.080 kb on + strand, within MPMX20_01991at 2081.084 kb on + strand, within MPMX20_01991at 2081.086 kb on - strand, within MPMX20_01991at 2081.091 kb on + strand, within MPMX20_01991at 2081.092 kb on - strand, within MPMX20_01991at 2081.141 kb on - strand, within MPMX20_01991at 2081.215 kb on - strand, within MPMX20_01991at 2081.218 kb on + strand, within MPMX20_01991at 2081.226 kb on - strand, within MPMX20_01991at 2081.228 kb on + strand, within MPMX20_01991at 2081.228 kb on + strand, within MPMX20_01991at 2081.236 kb on - strand, within MPMX20_01991at 2081.242 kb on - strand, within MPMX20_01991at 2081.284 kb on - strand, within MPMX20_01991at 2081.295 kb on + strand, within MPMX20_01991at 2081.475 kb on + strandat 2081.548 kb on + strandat 2081.556 kb on - strandat 2081.619 kb on - strandat 2081.619 kb on - strandat 2081.668 kb on + strandat 2081.674 kb on - strandat 2081.684 kb on + strandat 2081.684 kb on + strandat 2081.704 kb on + strand, within MPMX20_01992at 2081.784 kb on - strand, within MPMX20_01992at 2081.786 kb on + strand, within MPMX20_01992at 2081.832 kb on - strand, within MPMX20_01992at 2081.854 kb on + strand, within MPMX20_01992

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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2,079,058 + MPMX20_01988 0.68 -1.3
2,079,105 - MPMX20_01988 0.71 +2.3
2,079,160 - MPMX20_01988 0.74 -0.2
2,079,190 - MPMX20_01988 0.76 -2.8
2,079,225 + MPMX20_01988 0.78 -2.6
2,079,233 - MPMX20_01988 0.79 +1.3
2,079,238 - MPMX20_01988 0.79 +0.2
2,079,271 + MPMX20_01988 0.81 +0.8
2,079,345 + MPMX20_01988 0.86 +4.2
2,079,518 + +2.4
2,079,525 + +1.7
2,079,533 - -1.8
2,079,550 + -1.1
2,079,618 - +2.1
2,079,644 - +0.0
2,079,686 - +3.3
2,079,721 + +1.4
2,079,721 + -0.5
2,079,750 - MPMX20_01989 0.10 +0.2
2,079,782 - MPMX20_01989 0.24 -0.5
2,079,845 + MPMX20_01989 0.50 +2.9
2,079,864 + MPMX20_01989 0.58 +0.2
2,079,975 - -0.5
2,079,981 + +1.4
2,079,992 - -1.1
2,080,078 - +0.8
2,080,078 - -1.6
2,080,104 + MPMX20_01990 0.10 -0.5
2,080,141 - MPMX20_01990 0.14 +1.9
2,080,148 - MPMX20_01990 0.15 -2.1
2,080,189 + MPMX20_01990 0.20 -0.1
2,080,320 + MPMX20_01990 0.34 +0.0
2,080,328 - MPMX20_01990 0.35 +0.3
2,080,346 - MPMX20_01990 0.37 +2.6
2,080,348 + MPMX20_01990 0.37 +1.3
2,080,481 + MPMX20_01990 0.52 +0.2
2,080,518 + MPMX20_01990 0.56 +4.2
2,080,531 - MPMX20_01990 0.58 +1.3
2,080,531 - MPMX20_01990 0.58 +4.9
2,080,535 + MPMX20_01990 0.58 +0.4
2,080,560 - MPMX20_01990 0.61 -1.1
2,080,671 - MPMX20_01990 0.73 -0.1
2,080,739 + MPMX20_01990 0.81 +2.2
2,080,744 + MPMX20_01990 0.81 +0.6
2,080,891 + -1.8
2,080,899 - -0.7
2,080,899 - +0.9
2,080,899 - +1.5
2,080,937 + +0.0
2,080,948 + -2.3
2,080,996 + -2.1
2,081,032 - +1.2
2,081,032 - -0.1
2,081,037 - +1.9
2,081,077 + MPMX20_01991 0.17 +0.2
2,081,080 + MPMX20_01991 0.18 -2.1
2,081,084 + MPMX20_01991 0.18 +0.2
2,081,086 - MPMX20_01991 0.19 -0.3
2,081,091 + MPMX20_01991 0.20 -2.7
2,081,092 - MPMX20_01991 0.20 +0.6
2,081,141 - MPMX20_01991 0.29 -1.4
2,081,215 - MPMX20_01991 0.44 -1.2
2,081,218 + MPMX20_01991 0.44 -3.7
2,081,226 - MPMX20_01991 0.46 -0.5
2,081,228 + MPMX20_01991 0.46 -2.7
2,081,228 + MPMX20_01991 0.46 -0.5
2,081,236 - MPMX20_01991 0.48 -1.3
2,081,242 - MPMX20_01991 0.49 -1.8
2,081,284 - MPMX20_01991 0.57 -1.1
2,081,295 + MPMX20_01991 0.59 +1.2
2,081,475 + +0.3
2,081,548 + +0.5
2,081,556 - +1.0
2,081,619 - -0.8
2,081,619 - -1.4
2,081,668 + -2.2
2,081,674 - -0.3
2,081,684 + -0.8
2,081,684 + -2.0
2,081,704 + MPMX20_01992 0.11 -0.1
2,081,784 - MPMX20_01992 0.15 -1.9
2,081,786 + MPMX20_01992 0.15 -1.4
2,081,832 - MPMX20_01992 0.17 -0.1
2,081,854 + MPMX20_01992 0.18 -0.6

Or see this region's nucleotide sequence