Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01988 and MPMX20_01989 are separated by 149 nucleotides MPMX20_01989 and MPMX20_01990 are separated by 48 nucleotides MPMX20_01990 and MPMX20_01991 are separated by 79 nucleotides MPMX20_01991 and MPMX20_01992 overlap by 22 nucleotides
MPMX20_01988: MPMX20_01988 - Phosphoethanolamine transferase EptA, at 2,077,950 to 2,079,575
_01988
MPMX20_01989: MPMX20_01989 - hypothetical protein, at 2,079,725 to 2,079,964
_01989
MPMX20_01990: MPMX20_01990 - Oxidoreductase YdhF, at 2,080,013 to 2,080,909
_01990
MPMX20_01991: MPMX20_01991 - Superoxide dismutase [Cu-Zn], at 2,080,989 to 2,081,507
_01991
MPMX20_01992: MPMX20_01992 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 2,081,486 to 2,083,519
_01992
Position (kb)
2080
2081 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2079.058 kb on + strand, within MPMX20_01988 at 2079.105 kb on - strand, within MPMX20_01988 at 2079.160 kb on - strand, within MPMX20_01988 at 2079.190 kb on - strand, within MPMX20_01988 at 2079.225 kb on + strand, within MPMX20_01988 at 2079.233 kb on - strand, within MPMX20_01988 at 2079.238 kb on - strand, within MPMX20_01988 at 2079.271 kb on + strand, within MPMX20_01988 at 2079.345 kb on + strand, within MPMX20_01988 at 2079.518 kb on + strand at 2079.525 kb on + strand at 2079.533 kb on - strand at 2079.550 kb on + strand at 2079.618 kb on - strand at 2079.644 kb on - strand at 2079.686 kb on - strand at 2079.721 kb on + strand at 2079.721 kb on + strand at 2079.750 kb on - strand, within MPMX20_01989 at 2079.782 kb on - strand, within MPMX20_01989 at 2079.845 kb on + strand, within MPMX20_01989 at 2079.864 kb on + strand, within MPMX20_01989 at 2079.975 kb on - strand at 2079.981 kb on + strand at 2079.992 kb on - strand at 2080.078 kb on - strand at 2080.078 kb on - strand at 2080.104 kb on + strand, within MPMX20_01990 at 2080.141 kb on - strand, within MPMX20_01990 at 2080.148 kb on - strand, within MPMX20_01990 at 2080.189 kb on + strand, within MPMX20_01990 at 2080.320 kb on + strand, within MPMX20_01990 at 2080.328 kb on - strand, within MPMX20_01990 at 2080.346 kb on - strand, within MPMX20_01990 at 2080.348 kb on + strand, within MPMX20_01990 at 2080.481 kb on + strand, within MPMX20_01990 at 2080.518 kb on + strand, within MPMX20_01990 at 2080.531 kb on - strand, within MPMX20_01990 at 2080.531 kb on - strand, within MPMX20_01990 at 2080.535 kb on + strand, within MPMX20_01990 at 2080.560 kb on - strand, within MPMX20_01990 at 2080.671 kb on - strand, within MPMX20_01990 at 2080.739 kb on + strand, within MPMX20_01990 at 2080.744 kb on + strand, within MPMX20_01990 at 2080.891 kb on + strand at 2080.899 kb on - strand at 2080.899 kb on - strand at 2080.899 kb on - strand at 2080.937 kb on + strand at 2080.948 kb on + strand at 2080.996 kb on + strand at 2081.032 kb on - strand at 2081.032 kb on - strand at 2081.037 kb on - strand at 2081.077 kb on + strand, within MPMX20_01991 at 2081.080 kb on + strand, within MPMX20_01991 at 2081.084 kb on + strand, within MPMX20_01991 at 2081.086 kb on - strand, within MPMX20_01991 at 2081.091 kb on + strand, within MPMX20_01991 at 2081.092 kb on - strand, within MPMX20_01991 at 2081.141 kb on - strand, within MPMX20_01991 at 2081.215 kb on - strand, within MPMX20_01991 at 2081.218 kb on + strand, within MPMX20_01991 at 2081.226 kb on - strand, within MPMX20_01991 at 2081.228 kb on + strand, within MPMX20_01991 at 2081.228 kb on + strand, within MPMX20_01991 at 2081.236 kb on - strand, within MPMX20_01991 at 2081.242 kb on - strand, within MPMX20_01991 at 2081.284 kb on - strand, within MPMX20_01991 at 2081.295 kb on + strand, within MPMX20_01991 at 2081.475 kb on + strand at 2081.548 kb on + strand at 2081.556 kb on - strand at 2081.619 kb on - strand at 2081.619 kb on - strand at 2081.668 kb on + strand at 2081.674 kb on - strand at 2081.684 kb on + strand at 2081.684 kb on + strand at 2081.704 kb on + strand, within MPMX20_01992 at 2081.784 kb on - strand, within MPMX20_01992 at 2081.786 kb on + strand, within MPMX20_01992 at 2081.832 kb on - strand, within MPMX20_01992 at 2081.854 kb on + strand, within MPMX20_01992
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 2,079,058 + MPMX20_01988 0.68 -1.3 2,079,105 - MPMX20_01988 0.71 +2.3 2,079,160 - MPMX20_01988 0.74 -0.2 2,079,190 - MPMX20_01988 0.76 -2.8 2,079,225 + MPMX20_01988 0.78 -2.6 2,079,233 - MPMX20_01988 0.79 +1.3 2,079,238 - MPMX20_01988 0.79 +0.2 2,079,271 + MPMX20_01988 0.81 +0.8 2,079,345 + MPMX20_01988 0.86 +4.2 2,079,518 + +2.4 2,079,525 + +1.7 2,079,533 - -1.8 2,079,550 + -1.1 2,079,618 - +2.1 2,079,644 - +0.0 2,079,686 - +3.3 2,079,721 + +1.4 2,079,721 + -0.5 2,079,750 - MPMX20_01989 0.10 +0.2 2,079,782 - MPMX20_01989 0.24 -0.5 2,079,845 + MPMX20_01989 0.50 +2.9 2,079,864 + MPMX20_01989 0.58 +0.2 2,079,975 - -0.5 2,079,981 + +1.4 2,079,992 - -1.1 2,080,078 - +0.8 2,080,078 - -1.6 2,080,104 + MPMX20_01990 0.10 -0.5 2,080,141 - MPMX20_01990 0.14 +1.9 2,080,148 - MPMX20_01990 0.15 -2.1 2,080,189 + MPMX20_01990 0.20 -0.1 2,080,320 + MPMX20_01990 0.34 +0.0 2,080,328 - MPMX20_01990 0.35 +0.3 2,080,346 - MPMX20_01990 0.37 +2.6 2,080,348 + MPMX20_01990 0.37 +1.3 2,080,481 + MPMX20_01990 0.52 +0.2 2,080,518 + MPMX20_01990 0.56 +4.2 2,080,531 - MPMX20_01990 0.58 +1.3 2,080,531 - MPMX20_01990 0.58 +4.9 2,080,535 + MPMX20_01990 0.58 +0.4 2,080,560 - MPMX20_01990 0.61 -1.1 2,080,671 - MPMX20_01990 0.73 -0.1 2,080,739 + MPMX20_01990 0.81 +2.2 2,080,744 + MPMX20_01990 0.81 +0.6 2,080,891 + -1.8 2,080,899 - -0.7 2,080,899 - +0.9 2,080,899 - +1.5 2,080,937 + +0.0 2,080,948 + -2.3 2,080,996 + -2.1 2,081,032 - +1.2 2,081,032 - -0.1 2,081,037 - +1.9 2,081,077 + MPMX20_01991 0.17 +0.2 2,081,080 + MPMX20_01991 0.18 -2.1 2,081,084 + MPMX20_01991 0.18 +0.2 2,081,086 - MPMX20_01991 0.19 -0.3 2,081,091 + MPMX20_01991 0.20 -2.7 2,081,092 - MPMX20_01991 0.20 +0.6 2,081,141 - MPMX20_01991 0.29 -1.4 2,081,215 - MPMX20_01991 0.44 -1.2 2,081,218 + MPMX20_01991 0.44 -3.7 2,081,226 - MPMX20_01991 0.46 -0.5 2,081,228 + MPMX20_01991 0.46 -2.7 2,081,228 + MPMX20_01991 0.46 -0.5 2,081,236 - MPMX20_01991 0.48 -1.3 2,081,242 - MPMX20_01991 0.49 -1.8 2,081,284 - MPMX20_01991 0.57 -1.1 2,081,295 + MPMX20_01991 0.59 +1.2 2,081,475 + +0.3 2,081,548 + +0.5 2,081,556 - +1.0 2,081,619 - -0.8 2,081,619 - -1.4 2,081,668 + -2.2 2,081,674 - -0.3 2,081,684 + -0.8 2,081,684 + -2.0 2,081,704 + MPMX20_01992 0.11 -0.1 2,081,784 - MPMX20_01992 0.15 -1.9 2,081,786 + MPMX20_01992 0.15 -1.4 2,081,832 - MPMX20_01992 0.17 -0.1 2,081,854 + MPMX20_01992 0.18 -0.6
Or see this region's nucleotide sequence