Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01841 and MPMX20_01842 are separated by 91 nucleotides MPMX20_01842 and MPMX20_01843 are separated by 47 nucleotides
MPMX20_01841: MPMX20_01841 - MltA-interacting protein, at 1,935,154 to 1,935,903
_01841
MPMX20_01842: MPMX20_01842 - putative oxidoreductase, at 1,935,995 to 1,936,849
_01842
MPMX20_01843: MPMX20_01843 - Putative glucose-6-phosphate 1-epimerase, at 1,936,897 to 1,937,781
_01843
Position (kb)
1935
1936
1937 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1935.024 kb on - strand at 1935.035 kb on - strand at 1935.054 kb on + strand at 1935.076 kb on - strand at 1935.107 kb on + strand at 1935.114 kb on - strand at 1935.116 kb on - strand at 1935.174 kb on + strand at 1935.214 kb on - strand at 1935.231 kb on + strand, within MPMX20_01841 at 1935.256 kb on - strand, within MPMX20_01841 at 1935.261 kb on - strand, within MPMX20_01841 at 1935.285 kb on - strand, within MPMX20_01841 at 1935.451 kb on - strand, within MPMX20_01841 at 1935.451 kb on - strand, within MPMX20_01841 at 1935.495 kb on + strand, within MPMX20_01841 at 1935.514 kb on + strand, within MPMX20_01841 at 1935.551 kb on + strand, within MPMX20_01841 at 1935.588 kb on - strand, within MPMX20_01841 at 1935.590 kb on + strand, within MPMX20_01841 at 1935.593 kb on - strand, within MPMX20_01841 at 1935.606 kb on - strand, within MPMX20_01841 at 1935.643 kb on + strand, within MPMX20_01841 at 1935.653 kb on - strand, within MPMX20_01841 at 1935.672 kb on + strand, within MPMX20_01841 at 1935.674 kb on + strand, within MPMX20_01841 at 1935.674 kb on + strand, within MPMX20_01841 at 1935.682 kb on - strand, within MPMX20_01841 at 1935.709 kb on + strand, within MPMX20_01841 at 1935.709 kb on + strand, within MPMX20_01841 at 1935.744 kb on + strand, within MPMX20_01841 at 1935.745 kb on - strand, within MPMX20_01841 at 1935.800 kb on - strand, within MPMX20_01841 at 1935.808 kb on - strand, within MPMX20_01841 at 1935.820 kb on - strand, within MPMX20_01841 at 1935.858 kb on + strand at 1935.909 kb on + strand at 1936.034 kb on + strand at 1936.121 kb on + strand, within MPMX20_01842 at 1936.148 kb on + strand, within MPMX20_01842 at 1936.170 kb on + strand, within MPMX20_01842 at 1936.273 kb on - strand, within MPMX20_01842 at 1936.297 kb on + strand, within MPMX20_01842 at 1936.305 kb on - strand, within MPMX20_01842 at 1936.324 kb on - strand, within MPMX20_01842 at 1936.380 kb on - strand, within MPMX20_01842 at 1936.466 kb on + strand, within MPMX20_01842 at 1936.470 kb on - strand, within MPMX20_01842 at 1936.542 kb on - strand, within MPMX20_01842 at 1936.590 kb on - strand, within MPMX20_01842 at 1936.602 kb on + strand, within MPMX20_01842 at 1936.684 kb on + strand, within MPMX20_01842 at 1936.686 kb on - strand, within MPMX20_01842 at 1936.747 kb on - strand, within MPMX20_01842 at 1936.758 kb on - strand, within MPMX20_01842 at 1936.762 kb on + strand, within MPMX20_01842 at 1936.765 kb on + strand at 1936.806 kb on - strand at 1936.829 kb on - strand at 1936.829 kb on - strand at 1936.862 kb on + strand at 1936.905 kb on + strand at 1936.905 kb on + strand at 1936.913 kb on - strand at 1936.931 kb on - strand at 1936.983 kb on - strand at 1936.988 kb on - strand, within MPMX20_01843 at 1936.998 kb on - strand, within MPMX20_01843 at 1937.066 kb on + strand, within MPMX20_01843 at 1937.084 kb on - strand, within MPMX20_01843 at 1937.099 kb on + strand, within MPMX20_01843 at 1937.127 kb on - strand, within MPMX20_01843 at 1937.184 kb on - strand, within MPMX20_01843 at 1937.199 kb on - strand, within MPMX20_01843 at 1937.234 kb on - strand, within MPMX20_01843 at 1937.238 kb on + strand, within MPMX20_01843 at 1937.253 kb on + strand, within MPMX20_01843 at 1937.261 kb on + strand, within MPMX20_01843 at 1937.269 kb on - strand, within MPMX20_01843 at 1937.287 kb on + strand, within MPMX20_01843 at 1937.295 kb on - strand, within MPMX20_01843 at 1937.303 kb on - strand, within MPMX20_01843 at 1937.401 kb on + strand, within MPMX20_01843 at 1937.421 kb on + strand, within MPMX20_01843 at 1937.421 kb on + strand, within MPMX20_01843 at 1937.421 kb on + strand, within MPMX20_01843 at 1937.428 kb on + strand, within MPMX20_01843 at 1937.428 kb on + strand, within MPMX20_01843 at 1937.428 kb on + strand, within MPMX20_01843 at 1937.429 kb on - strand, within MPMX20_01843 at 1937.429 kb on - strand, within MPMX20_01843 at 1937.429 kb on - strand, within MPMX20_01843 at 1937.436 kb on - strand, within MPMX20_01843 at 1937.533 kb on - strand, within MPMX20_01843 at 1937.534 kb on - strand, within MPMX20_01843 at 1937.605 kb on + strand, within MPMX20_01843 at 1937.643 kb on + strand, within MPMX20_01843 at 1937.646 kb on - strand, within MPMX20_01843 at 1937.726 kb on - strand at 1937.735 kb on + strand at 1937.735 kb on + strand at 1937.737 kb on + strand at 1937.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 1,935,024 - +0.3 1,935,035 - -0.1 1,935,054 + +0.2 1,935,076 - +0.1 1,935,107 + -1.3 1,935,114 - +0.3 1,935,116 - -0.0 1,935,174 + +1.1 1,935,214 - -1.3 1,935,231 + MPMX20_01841 0.10 +1.1 1,935,256 - MPMX20_01841 0.14 -0.2 1,935,261 - MPMX20_01841 0.14 +1.3 1,935,285 - MPMX20_01841 0.17 +0.3 1,935,451 - MPMX20_01841 0.40 +0.5 1,935,451 - MPMX20_01841 0.40 +1.2 1,935,495 + MPMX20_01841 0.45 -2.5 1,935,514 + MPMX20_01841 0.48 +1.0 1,935,551 + MPMX20_01841 0.53 +0.3 1,935,588 - MPMX20_01841 0.58 -1.9 1,935,590 + MPMX20_01841 0.58 -0.0 1,935,593 - MPMX20_01841 0.59 +1.5 1,935,606 - MPMX20_01841 0.60 -1.9 1,935,643 + MPMX20_01841 0.65 -0.2 1,935,653 - MPMX20_01841 0.67 -0.8 1,935,672 + MPMX20_01841 0.69 +0.3 1,935,674 + MPMX20_01841 0.69 -1.0 1,935,674 + MPMX20_01841 0.69 -0.1 1,935,682 - MPMX20_01841 0.70 -2.1 1,935,709 + MPMX20_01841 0.74 -0.7 1,935,709 + MPMX20_01841 0.74 +0.5 1,935,744 + MPMX20_01841 0.79 -3.4 1,935,745 - MPMX20_01841 0.79 +0.9 1,935,800 - MPMX20_01841 0.86 -3.3 1,935,808 - MPMX20_01841 0.87 -0.3 1,935,820 - MPMX20_01841 0.89 -1.3 1,935,858 + -0.5 1,935,909 + -2.3 1,936,034 + -1.0 1,936,121 + MPMX20_01842 0.15 +5.9 1,936,148 + MPMX20_01842 0.18 -0.7 1,936,170 + MPMX20_01842 0.20 +0.3 1,936,273 - MPMX20_01842 0.33 -1.6 1,936,297 + MPMX20_01842 0.35 +1.3 1,936,305 - MPMX20_01842 0.36 -0.8 1,936,324 - MPMX20_01842 0.38 -0.7 1,936,380 - MPMX20_01842 0.45 -3.0 1,936,466 + MPMX20_01842 0.55 -1.8 1,936,470 - MPMX20_01842 0.56 -0.7 1,936,542 - MPMX20_01842 0.64 -1.6 1,936,590 - MPMX20_01842 0.70 -2.7 1,936,602 + MPMX20_01842 0.71 -1.2 1,936,684 + MPMX20_01842 0.81 +1.5 1,936,686 - MPMX20_01842 0.81 +2.2 1,936,747 - MPMX20_01842 0.88 +2.6 1,936,758 - MPMX20_01842 0.89 +0.3 1,936,762 + MPMX20_01842 0.90 +0.7 1,936,765 + +0.3 1,936,806 - +0.2 1,936,829 - +1.9 1,936,829 - +1.7 1,936,862 + +0.1 1,936,905 + -1.0 1,936,905 + -2.0 1,936,913 - -0.6 1,936,931 - -1.8 1,936,983 - -0.3 1,936,988 - MPMX20_01843 0.10 +0.2 1,936,998 - MPMX20_01843 0.11 -1.0 1,937,066 + MPMX20_01843 0.19 +0.6 1,937,084 - MPMX20_01843 0.21 -0.5 1,937,099 + MPMX20_01843 0.23 +1.9 1,937,127 - MPMX20_01843 0.26 -0.2 1,937,184 - MPMX20_01843 0.32 +2.0 1,937,199 - MPMX20_01843 0.34 -0.1 1,937,234 - MPMX20_01843 0.38 +0.5 1,937,238 + MPMX20_01843 0.39 -0.5 1,937,253 + MPMX20_01843 0.40 +1.5 1,937,261 + MPMX20_01843 0.41 +1.3 1,937,269 - MPMX20_01843 0.42 -0.2 1,937,287 + MPMX20_01843 0.44 -0.1 1,937,295 - MPMX20_01843 0.45 +0.5 1,937,303 - MPMX20_01843 0.46 -0.9 1,937,401 + MPMX20_01843 0.57 +2.0 1,937,421 + MPMX20_01843 0.59 +0.0 1,937,421 + MPMX20_01843 0.59 +5.7 1,937,421 + MPMX20_01843 0.59 -0.8 1,937,428 + MPMX20_01843 0.60 -0.7 1,937,428 + MPMX20_01843 0.60 -1.5 1,937,428 + MPMX20_01843 0.60 -2.5 1,937,429 - MPMX20_01843 0.60 +0.4 1,937,429 - MPMX20_01843 0.60 +1.3 1,937,429 - MPMX20_01843 0.60 -0.3 1,937,436 - MPMX20_01843 0.61 -0.4 1,937,533 - MPMX20_01843 0.72 -1.0 1,937,534 - MPMX20_01843 0.72 +0.3 1,937,605 + MPMX20_01843 0.80 -0.9 1,937,643 + MPMX20_01843 0.84 -1.2 1,937,646 - MPMX20_01843 0.85 +0.6 1,937,726 - -0.3 1,937,735 + -0.1 1,937,735 + +1.3 1,937,737 + +0.7 1,937,738 - -1.8
Or see this region's nucleotide sequence