Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01042

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01041 and MPMX20_01042 are separated by 222 nucleotidesMPMX20_01042 and MPMX20_01043 are separated by 35 nucleotides MPMX20_01041: MPMX20_01041 - Multidrug resistance-like ATP-binding protein MdlB, at 1,096,893 to 1,098,674 _01041 MPMX20_01042: MPMX20_01042 - Nitrogen regulatory protein P-II 2, at 1,098,897 to 1,099,235 _01042 MPMX20_01043: MPMX20_01043 - Ammonia channel, at 1,099,271 to 1,100,557 _01043 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 1097.927 kb on + strand, within MPMX20_01041at 1097.977 kb on - strand, within MPMX20_01041at 1097.995 kb on + strand, within MPMX20_01041at 1098.050 kb on + strand, within MPMX20_01041at 1098.058 kb on - strand, within MPMX20_01041at 1098.118 kb on + strand, within MPMX20_01041at 1098.192 kb on + strand, within MPMX20_01041at 1098.201 kb on - strand, within MPMX20_01041at 1098.211 kb on + strand, within MPMX20_01041at 1098.227 kb on + strand, within MPMX20_01041at 1098.239 kb on + strand, within MPMX20_01041at 1098.247 kb on - strand, within MPMX20_01041at 1098.252 kb on - strand, within MPMX20_01041at 1098.282 kb on + strand, within MPMX20_01041at 1098.313 kb on + strand, within MPMX20_01041at 1098.320 kb on - strand, within MPMX20_01041at 1098.341 kb on + strand, within MPMX20_01041at 1098.429 kb on - strand, within MPMX20_01041at 1098.524 kb on - strandat 1098.545 kb on + strandat 1098.557 kb on - strandat 1098.573 kb on - strandat 1098.905 kb on + strandat 1099.039 kb on + strand, within MPMX20_01042at 1099.039 kb on + strand, within MPMX20_01042at 1099.041 kb on + strand, within MPMX20_01042at 1099.041 kb on + strand, within MPMX20_01042at 1099.044 kb on + strand, within MPMX20_01042at 1099.047 kb on - strand, within MPMX20_01042at 1099.059 kb on - strand, within MPMX20_01042at 1099.230 kb on + strandat 1099.251 kb on + strandat 1099.251 kb on + strandat 1099.253 kb on + strandat 1099.259 kb on - strandat 1099.261 kb on - strandat 1099.261 kb on - strandat 1099.313 kb on + strandat 1099.391 kb on - strandat 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.426 kb on + strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.434 kb on - strand, within MPMX20_01043at 1099.444 kb on - strand, within MPMX20_01043at 1099.506 kb on - strand, within MPMX20_01043at 1099.506 kb on - strand, within MPMX20_01043at 1099.524 kb on - strand, within MPMX20_01043at 1099.723 kb on - strand, within MPMX20_01043at 1099.725 kb on + strand, within MPMX20_01043at 1099.743 kb on - strand, within MPMX20_01043at 1099.743 kb on - strand, within MPMX20_01043at 1099.743 kb on - strand, within MPMX20_01043at 1099.760 kb on - strand, within MPMX20_01043at 1099.774 kb on + strand, within MPMX20_01043at 1099.816 kb on - strand, within MPMX20_01043at 1099.835 kb on + strand, within MPMX20_01043at 1099.838 kb on - strand, within MPMX20_01043at 1099.848 kb on - strand, within MPMX20_01043at 1099.869 kb on + strand, within MPMX20_01043at 1099.877 kb on - strand, within MPMX20_01043at 1099.877 kb on - strand, within MPMX20_01043at 1099.903 kb on - strand, within MPMX20_01043at 1099.927 kb on - strand, within MPMX20_01043at 1099.937 kb on + strand, within MPMX20_01043at 1099.962 kb on + strand, within MPMX20_01043at 1100.018 kb on + strand, within MPMX20_01043at 1100.023 kb on + strand, within MPMX20_01043at 1100.026 kb on - strand, within MPMX20_01043at 1100.044 kb on + strand, within MPMX20_01043at 1100.047 kb on - strand, within MPMX20_01043at 1100.054 kb on + strand, within MPMX20_01043at 1100.075 kb on - strand, within MPMX20_01043at 1100.095 kb on + strand, within MPMX20_01043at 1100.095 kb on + strand, within MPMX20_01043at 1100.101 kb on + strand, within MPMX20_01043at 1100.103 kb on - strand, within MPMX20_01043at 1100.121 kb on + strand, within MPMX20_01043at 1100.151 kb on - strand, within MPMX20_01043at 1100.154 kb on + strand, within MPMX20_01043

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
remove
1,097,927 + MPMX20_01041 0.58 -0.5
1,097,977 - MPMX20_01041 0.61 -1.7
1,097,995 + MPMX20_01041 0.62 -1.5
1,098,050 + MPMX20_01041 0.65 +1.6
1,098,058 - MPMX20_01041 0.65 -2.9
1,098,118 + MPMX20_01041 0.69 -2.5
1,098,192 + MPMX20_01041 0.73 -0.8
1,098,201 - MPMX20_01041 0.73 -1.0
1,098,211 + MPMX20_01041 0.74 -0.6
1,098,227 + MPMX20_01041 0.75 -4.0
1,098,239 + MPMX20_01041 0.76 -0.7
1,098,247 - MPMX20_01041 0.76 -0.8
1,098,252 - MPMX20_01041 0.76 -1.3
1,098,282 + MPMX20_01041 0.78 +1.3
1,098,313 + MPMX20_01041 0.80 +0.8
1,098,320 - MPMX20_01041 0.80 -0.0
1,098,341 + MPMX20_01041 0.81 +1.2
1,098,429 - MPMX20_01041 0.86 +1.7
1,098,524 - -0.4
1,098,545 + -2.7
1,098,557 - -1.6
1,098,573 - +0.8
1,098,905 + +0.1
1,099,039 + MPMX20_01042 0.42 +0.6
1,099,039 + MPMX20_01042 0.42 +0.0
1,099,041 + MPMX20_01042 0.42 +1.3
1,099,041 + MPMX20_01042 0.42 +0.6
1,099,044 + MPMX20_01042 0.43 -1.6
1,099,047 - MPMX20_01042 0.44 +0.9
1,099,059 - MPMX20_01042 0.48 +1.3
1,099,230 + -1.0
1,099,251 + +2.0
1,099,251 + -0.2
1,099,253 + +0.5
1,099,259 - -1.6
1,099,261 - -2.0
1,099,261 - -0.4
1,099,313 + +0.6
1,099,391 - -1.7
1,099,426 + MPMX20_01043 0.12 -0.3
1,099,426 + MPMX20_01043 0.12 -1.2
1,099,426 + MPMX20_01043 0.12 +1.4
1,099,426 + MPMX20_01043 0.12 -0.4
1,099,426 + MPMX20_01043 0.12 +0.8
1,099,426 + MPMX20_01043 0.12 +0.0
1,099,426 + MPMX20_01043 0.12 -0.4
1,099,426 + MPMX20_01043 0.12 +1.0
1,099,434 - MPMX20_01043 0.13 +2.3
1,099,434 - MPMX20_01043 0.13 +0.5
1,099,434 - MPMX20_01043 0.13 -1.7
1,099,434 - MPMX20_01043 0.13 -3.6
1,099,434 - MPMX20_01043 0.13 +0.4
1,099,434 - MPMX20_01043 0.13 -3.4
1,099,434 - MPMX20_01043 0.13 -0.7
1,099,434 - MPMX20_01043 0.13 +0.5
1,099,444 - MPMX20_01043 0.13 -1.6
1,099,506 - MPMX20_01043 0.18 +3.0
1,099,506 - MPMX20_01043 0.18 -1.4
1,099,524 - MPMX20_01043 0.20 +1.2
1,099,723 - MPMX20_01043 0.35 -1.7
1,099,725 + MPMX20_01043 0.35 +0.2
1,099,743 - MPMX20_01043 0.37 -3.0
1,099,743 - MPMX20_01043 0.37 -3.6
1,099,743 - MPMX20_01043 0.37 +7.1
1,099,760 - MPMX20_01043 0.38 -1.5
1,099,774 + MPMX20_01043 0.39 +0.5
1,099,816 - MPMX20_01043 0.42 -2.3
1,099,835 + MPMX20_01043 0.44 +0.2
1,099,838 - MPMX20_01043 0.44 -2.1
1,099,848 - MPMX20_01043 0.45 +2.0
1,099,869 + MPMX20_01043 0.46 -0.9
1,099,877 - MPMX20_01043 0.47 +0.4
1,099,877 - MPMX20_01043 0.47 -0.6
1,099,903 - MPMX20_01043 0.49 -0.5
1,099,927 - MPMX20_01043 0.51 -1.6
1,099,937 + MPMX20_01043 0.52 -1.6
1,099,962 + MPMX20_01043 0.54 -0.1
1,100,018 + MPMX20_01043 0.58 -0.1
1,100,023 + MPMX20_01043 0.58 -2.8
1,100,026 - MPMX20_01043 0.59 +0.8
1,100,044 + MPMX20_01043 0.60 +1.3
1,100,047 - MPMX20_01043 0.60 +0.6
1,100,054 + MPMX20_01043 0.61 +0.3
1,100,075 - MPMX20_01043 0.62 -0.0
1,100,095 + MPMX20_01043 0.64 +0.7
1,100,095 + MPMX20_01043 0.64 -1.1
1,100,101 + MPMX20_01043 0.64 +1.2
1,100,103 - MPMX20_01043 0.65 +0.4
1,100,121 + MPMX20_01043 0.66 -0.2
1,100,151 - MPMX20_01043 0.68 -0.0
1,100,154 + MPMX20_01043 0.69 +0.4

Or see this region's nucleotide sequence