Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01027

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01025 and MPMX20_01026 are separated by 307 nucleotidesMPMX20_01026 and MPMX20_01027 are separated by 330 nucleotidesMPMX20_01027 and MPMX20_01028 are separated by 260 nucleotides MPMX20_01025: MPMX20_01025 - hypothetical protein, at 1,078,726 to 1,079,304 _01025 MPMX20_01026: MPMX20_01026 - DNA-binding transcriptional regulator BolA, at 1,079,612 to 1,079,926 _01026 MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555 _01027 MPMX20_01028: MPMX20_01028 - ATP-dependent Clp protease proteolytic subunit, at 1,081,816 to 1,082,439 _01028 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 1079.378 kb on - strandat 1079.386 kb on - strandat 1079.391 kb on - strandat 1079.424 kb on - strandat 1079.452 kb on + strandat 1079.452 kb on + strandat 1079.452 kb on + strandat 1079.460 kb on + strandat 1079.460 kb on + strandat 1079.460 kb on - strandat 1079.460 kb on - strandat 1079.461 kb on - strandat 1079.461 kb on - strandat 1079.468 kb on - strandat 1079.468 kb on - strandat 1079.468 kb on - strandat 1079.468 kb on - strandat 1079.473 kb on + strandat 1079.496 kb on - strandat 1079.553 kb on - strandat 1079.583 kb on - strandat 1079.589 kb on - strandat 1079.591 kb on + strandat 1079.616 kb on + strandat 1079.638 kb on + strandat 1079.648 kb on + strand, within MPMX20_01026at 1079.648 kb on + strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.656 kb on - strand, within MPMX20_01026at 1079.658 kb on - strand, within MPMX20_01026at 1079.658 kb on - strand, within MPMX20_01026at 1079.658 kb on - strand, within MPMX20_01026at 1079.663 kb on - strand, within MPMX20_01026at 1079.749 kb on + strand, within MPMX20_01026at 1079.757 kb on - strand, within MPMX20_01026at 1079.757 kb on - strand, within MPMX20_01026at 1079.757 kb on - strand, within MPMX20_01026at 1079.812 kb on + strand, within MPMX20_01026at 1079.812 kb on + strand, within MPMX20_01026at 1079.812 kb on + strand, within MPMX20_01026at 1079.844 kb on + strand, within MPMX20_01026at 1079.851 kb on - strand, within MPMX20_01026at 1080.094 kb on + strandat 1080.120 kb on + strandat 1080.191 kb on + strandat 1080.200 kb on + strandat 1080.213 kb on + strandat 1080.213 kb on + strandat 1080.285 kb on + strandat 1080.352 kb on + strandat 1080.352 kb on + strandat 1080.352 kb on + strandat 1080.360 kb on - strandat 1080.360 kb on - strandat 1080.419 kb on + strand, within MPMX20_01027at 1080.424 kb on + strand, within MPMX20_01027at 1080.424 kb on + strand, within MPMX20_01027at 1080.448 kb on + strand, within MPMX20_01027at 1080.452 kb on + strand, within MPMX20_01027at 1080.543 kb on + strand, within MPMX20_01027at 1080.570 kb on + strand, within MPMX20_01027at 1080.578 kb on - strand, within MPMX20_01027at 1080.580 kb on + strand, within MPMX20_01027at 1080.588 kb on - strand, within MPMX20_01027at 1080.612 kb on + strand, within MPMX20_01027at 1080.612 kb on + strand, within MPMX20_01027at 1080.619 kb on - strand, within MPMX20_01027at 1080.656 kb on + strand, within MPMX20_01027at 1080.664 kb on - strand, within MPMX20_01027at 1080.683 kb on + strand, within MPMX20_01027at 1080.773 kb on - strand, within MPMX20_01027at 1080.800 kb on - strand, within MPMX20_01027at 1080.824 kb on + strand, within MPMX20_01027at 1080.824 kb on + strand, within MPMX20_01027at 1080.945 kb on - strand, within MPMX20_01027at 1080.972 kb on + strand, within MPMX20_01027at 1081.064 kb on - strand, within MPMX20_01027at 1081.083 kb on - strand, within MPMX20_01027at 1081.090 kb on + strand, within MPMX20_01027at 1081.100 kb on + strand, within MPMX20_01027at 1081.108 kb on - strand, within MPMX20_01027at 1081.398 kb on + strand, within MPMX20_01027at 1081.463 kb on - strandat 1081.487 kb on + strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.709 kb on - strandat 1081.713 kb on + strandat 1081.713 kb on + strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.767 kb on + strandat 1081.775 kb on - strandat 1081.826 kb on - strandat 1081.834 kb on + strandat 1081.866 kb on - strandat 1081.884 kb on + strand, within MPMX20_01028at 1081.892 kb on - strand, within MPMX20_01028at 1081.976 kb on - strand, within MPMX20_01028at 1082.108 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.237 kb on - strand, within MPMX20_01028at 1082.344 kb on - strand, within MPMX20_01028at 1082.530 kb on - strandat 1082.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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1,079,378 - -0.5
1,079,386 - +1.0
1,079,391 - -0.4
1,079,424 - -0.4
1,079,452 + -0.6
1,079,452 + +2.7
1,079,452 + -0.7
1,079,460 + +0.4
1,079,460 + -1.9
1,079,460 - +0.8
1,079,460 - +2.0
1,079,461 - -1.6
1,079,461 - +1.5
1,079,468 - +0.1
1,079,468 - -0.8
1,079,468 - +0.1
1,079,468 - +1.4
1,079,473 + +0.5
1,079,496 - -0.6
1,079,553 - +0.1
1,079,583 - +0.6
1,079,589 - -0.1
1,079,591 + +2.6
1,079,616 + -0.6
1,079,638 + -2.9
1,079,648 + MPMX20_01026 0.11 -1.4
1,079,648 + MPMX20_01026 0.11 +6.7
1,079,656 - MPMX20_01026 0.14 +1.7
1,079,656 - MPMX20_01026 0.14 -0.6
1,079,656 - MPMX20_01026 0.14 -0.4
1,079,656 - MPMX20_01026 0.14 +0.8
1,079,658 - MPMX20_01026 0.15 -4.2
1,079,658 - MPMX20_01026 0.15 -1.4
1,079,658 - MPMX20_01026 0.15 -2.5
1,079,663 - MPMX20_01026 0.16 -1.2
1,079,749 + MPMX20_01026 0.43 -2.0
1,079,757 - MPMX20_01026 0.46 -3.5
1,079,757 - MPMX20_01026 0.46 +1.2
1,079,757 - MPMX20_01026 0.46 -2.0
1,079,812 + MPMX20_01026 0.63 +7.7
1,079,812 + MPMX20_01026 0.63 +3.0
1,079,812 + MPMX20_01026 0.63 -2.8
1,079,844 + MPMX20_01026 0.74 +1.1
1,079,851 - MPMX20_01026 0.76 -0.4
1,080,094 + +0.1
1,080,120 + +0.4
1,080,191 + -1.7
1,080,200 + +0.1
1,080,213 + +0.8
1,080,213 + -3.5
1,080,285 + -1.0
1,080,352 + +0.9
1,080,352 + +1.4
1,080,352 + +0.1
1,080,360 - -2.7
1,080,360 - -2.0
1,080,419 + MPMX20_01027 0.12 +0.5
1,080,424 + MPMX20_01027 0.13 +1.2
1,080,424 + MPMX20_01027 0.13 +0.2
1,080,448 + MPMX20_01027 0.15 +0.3
1,080,452 + MPMX20_01027 0.15 +1.5
1,080,543 + MPMX20_01027 0.22 -0.5
1,080,570 + MPMX20_01027 0.24 -0.3
1,080,578 - MPMX20_01027 0.25 +0.3
1,080,580 + MPMX20_01027 0.25 +0.4
1,080,588 - MPMX20_01027 0.25 -0.6
1,080,612 + MPMX20_01027 0.27 +0.4
1,080,612 + MPMX20_01027 0.27 -0.7
1,080,619 - MPMX20_01027 0.28 -2.8
1,080,656 + MPMX20_01027 0.31 -0.1
1,080,664 - MPMX20_01027 0.31 -0.0
1,080,683 + MPMX20_01027 0.33 +1.4
1,080,773 - MPMX20_01027 0.40 +0.5
1,080,800 - MPMX20_01027 0.42 +0.6
1,080,824 + MPMX20_01027 0.44 +1.0
1,080,824 + MPMX20_01027 0.44 -0.8
1,080,945 - MPMX20_01027 0.53 +3.4
1,080,972 + MPMX20_01027 0.55 +1.7
1,081,064 - MPMX20_01027 0.62 +2.1
1,081,083 - MPMX20_01027 0.64 +2.7
1,081,090 + MPMX20_01027 0.64 -0.4
1,081,100 + MPMX20_01027 0.65 -2.2
1,081,108 - MPMX20_01027 0.66 +2.5
1,081,398 + MPMX20_01027 0.88 +1.5
1,081,463 - -1.6
1,081,487 + +1.0
1,081,634 - +0.2
1,081,634 - +5.0
1,081,634 - +0.3
1,081,634 - -2.5
1,081,634 - +1.8
1,081,709 - -0.2
1,081,713 + +0.9
1,081,713 + +0.7
1,081,721 - +2.2
1,081,721 - -0.5
1,081,721 - -0.0
1,081,721 - -1.2
1,081,721 - +1.4
1,081,767 + +2.1
1,081,775 - +1.1
1,081,826 - -1.0
1,081,834 + -0.0
1,081,866 - +0.6
1,081,884 + MPMX20_01028 0.11 +0.6
1,081,892 - MPMX20_01028 0.12 +2.0
1,081,976 - MPMX20_01028 0.26 +1.0
1,082,108 + MPMX20_01028 0.47 +1.0
1,082,175 + MPMX20_01028 0.58 -0.2
1,082,175 + MPMX20_01028 0.58 +0.2
1,082,175 + MPMX20_01028 0.58 +1.4
1,082,175 + MPMX20_01028 0.58 +0.2
1,082,237 - MPMX20_01028 0.67 +1.4
1,082,344 - MPMX20_01028 0.85 +0.2
1,082,530 - +1.2
1,082,535 + +0.3

Or see this region's nucleotide sequence