Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01025 and MPMX20_01026 are separated by 307 nucleotides MPMX20_01026 and MPMX20_01027 are separated by 330 nucleotides MPMX20_01027 and MPMX20_01028 are separated by 260 nucleotides
MPMX20_01025: MPMX20_01025 - hypothetical protein, at 1,078,726 to 1,079,304
_01025
MPMX20_01026: MPMX20_01026 - DNA-binding transcriptional regulator BolA, at 1,079,612 to 1,079,926
_01026
MPMX20_01027: MPMX20_01027 - Trigger factor, at 1,080,257 to 1,081,555
_01027
MPMX20_01028: MPMX20_01028 - ATP-dependent Clp protease proteolytic subunit, at 1,081,816 to 1,082,439
_01028
Position (kb)
1080
1081
1082 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 1079.378 kb on - strand at 1079.386 kb on - strand at 1079.391 kb on - strand at 1079.424 kb on - strand at 1079.452 kb on + strand at 1079.452 kb on + strand at 1079.452 kb on + strand at 1079.460 kb on + strand at 1079.460 kb on + strand at 1079.460 kb on - strand at 1079.460 kb on - strand at 1079.461 kb on - strand at 1079.461 kb on - strand at 1079.468 kb on - strand at 1079.468 kb on - strand at 1079.468 kb on - strand at 1079.468 kb on - strand at 1079.473 kb on + strand at 1079.496 kb on - strand at 1079.553 kb on - strand at 1079.583 kb on - strand at 1079.589 kb on - strand at 1079.591 kb on + strand at 1079.616 kb on + strand at 1079.638 kb on + strand at 1079.648 kb on + strand, within MPMX20_01026 at 1079.648 kb on + strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.656 kb on - strand, within MPMX20_01026 at 1079.658 kb on - strand, within MPMX20_01026 at 1079.658 kb on - strand, within MPMX20_01026 at 1079.658 kb on - strand, within MPMX20_01026 at 1079.663 kb on - strand, within MPMX20_01026 at 1079.749 kb on + strand, within MPMX20_01026 at 1079.757 kb on - strand, within MPMX20_01026 at 1079.757 kb on - strand, within MPMX20_01026 at 1079.757 kb on - strand, within MPMX20_01026 at 1079.812 kb on + strand, within MPMX20_01026 at 1079.812 kb on + strand, within MPMX20_01026 at 1079.812 kb on + strand, within MPMX20_01026 at 1079.844 kb on + strand, within MPMX20_01026 at 1079.851 kb on - strand, within MPMX20_01026 at 1080.094 kb on + strand at 1080.120 kb on + strand at 1080.191 kb on + strand at 1080.200 kb on + strand at 1080.213 kb on + strand at 1080.213 kb on + strand at 1080.285 kb on + strand at 1080.352 kb on + strand at 1080.352 kb on + strand at 1080.352 kb on + strand at 1080.360 kb on - strand at 1080.360 kb on - strand at 1080.419 kb on + strand, within MPMX20_01027 at 1080.424 kb on + strand, within MPMX20_01027 at 1080.424 kb on + strand, within MPMX20_01027 at 1080.448 kb on + strand, within MPMX20_01027 at 1080.452 kb on + strand, within MPMX20_01027 at 1080.543 kb on + strand, within MPMX20_01027 at 1080.570 kb on + strand, within MPMX20_01027 at 1080.578 kb on - strand, within MPMX20_01027 at 1080.580 kb on + strand, within MPMX20_01027 at 1080.588 kb on - strand, within MPMX20_01027 at 1080.612 kb on + strand, within MPMX20_01027 at 1080.612 kb on + strand, within MPMX20_01027 at 1080.619 kb on - strand, within MPMX20_01027 at 1080.656 kb on + strand, within MPMX20_01027 at 1080.664 kb on - strand, within MPMX20_01027 at 1080.683 kb on + strand, within MPMX20_01027 at 1080.773 kb on - strand, within MPMX20_01027 at 1080.800 kb on - strand, within MPMX20_01027 at 1080.824 kb on + strand, within MPMX20_01027 at 1080.824 kb on + strand, within MPMX20_01027 at 1080.945 kb on - strand, within MPMX20_01027 at 1080.972 kb on + strand, within MPMX20_01027 at 1081.064 kb on - strand, within MPMX20_01027 at 1081.083 kb on - strand, within MPMX20_01027 at 1081.090 kb on + strand, within MPMX20_01027 at 1081.100 kb on + strand, within MPMX20_01027 at 1081.108 kb on - strand, within MPMX20_01027 at 1081.398 kb on + strand, within MPMX20_01027 at 1081.463 kb on - strand at 1081.487 kb on + strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.634 kb on - strand at 1081.709 kb on - strand at 1081.713 kb on + strand at 1081.713 kb on + strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.721 kb on - strand at 1081.767 kb on + strand at 1081.775 kb on - strand at 1081.826 kb on - strand at 1081.834 kb on + strand at 1081.866 kb on - strand at 1081.884 kb on + strand, within MPMX20_01028 at 1081.892 kb on - strand, within MPMX20_01028 at 1081.976 kb on - strand, within MPMX20_01028 at 1082.108 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.175 kb on + strand, within MPMX20_01028 at 1082.237 kb on - strand, within MPMX20_01028 at 1082.344 kb on - strand, within MPMX20_01028 at 1082.530 kb on - strand at 1082.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 1,079,378 - -0.5 1,079,386 - +1.0 1,079,391 - -0.4 1,079,424 - -0.4 1,079,452 + -0.6 1,079,452 + +2.7 1,079,452 + -0.7 1,079,460 + +0.4 1,079,460 + -1.9 1,079,460 - +0.8 1,079,460 - +2.0 1,079,461 - -1.6 1,079,461 - +1.5 1,079,468 - +0.1 1,079,468 - -0.8 1,079,468 - +0.1 1,079,468 - +1.4 1,079,473 + +0.5 1,079,496 - -0.6 1,079,553 - +0.1 1,079,583 - +0.6 1,079,589 - -0.1 1,079,591 + +2.6 1,079,616 + -0.6 1,079,638 + -2.9 1,079,648 + MPMX20_01026 0.11 -1.4 1,079,648 + MPMX20_01026 0.11 +6.7 1,079,656 - MPMX20_01026 0.14 +1.7 1,079,656 - MPMX20_01026 0.14 -0.6 1,079,656 - MPMX20_01026 0.14 -0.4 1,079,656 - MPMX20_01026 0.14 +0.8 1,079,658 - MPMX20_01026 0.15 -4.2 1,079,658 - MPMX20_01026 0.15 -1.4 1,079,658 - MPMX20_01026 0.15 -2.5 1,079,663 - MPMX20_01026 0.16 -1.2 1,079,749 + MPMX20_01026 0.43 -2.0 1,079,757 - MPMX20_01026 0.46 -3.5 1,079,757 - MPMX20_01026 0.46 +1.2 1,079,757 - MPMX20_01026 0.46 -2.0 1,079,812 + MPMX20_01026 0.63 +7.7 1,079,812 + MPMX20_01026 0.63 +3.0 1,079,812 + MPMX20_01026 0.63 -2.8 1,079,844 + MPMX20_01026 0.74 +1.1 1,079,851 - MPMX20_01026 0.76 -0.4 1,080,094 + +0.1 1,080,120 + +0.4 1,080,191 + -1.7 1,080,200 + +0.1 1,080,213 + +0.8 1,080,213 + -3.5 1,080,285 + -1.0 1,080,352 + +0.9 1,080,352 + +1.4 1,080,352 + +0.1 1,080,360 - -2.7 1,080,360 - -2.0 1,080,419 + MPMX20_01027 0.12 +0.5 1,080,424 + MPMX20_01027 0.13 +1.2 1,080,424 + MPMX20_01027 0.13 +0.2 1,080,448 + MPMX20_01027 0.15 +0.3 1,080,452 + MPMX20_01027 0.15 +1.5 1,080,543 + MPMX20_01027 0.22 -0.5 1,080,570 + MPMX20_01027 0.24 -0.3 1,080,578 - MPMX20_01027 0.25 +0.3 1,080,580 + MPMX20_01027 0.25 +0.4 1,080,588 - MPMX20_01027 0.25 -0.6 1,080,612 + MPMX20_01027 0.27 +0.4 1,080,612 + MPMX20_01027 0.27 -0.7 1,080,619 - MPMX20_01027 0.28 -2.8 1,080,656 + MPMX20_01027 0.31 -0.1 1,080,664 - MPMX20_01027 0.31 -0.0 1,080,683 + MPMX20_01027 0.33 +1.4 1,080,773 - MPMX20_01027 0.40 +0.5 1,080,800 - MPMX20_01027 0.42 +0.6 1,080,824 + MPMX20_01027 0.44 +1.0 1,080,824 + MPMX20_01027 0.44 -0.8 1,080,945 - MPMX20_01027 0.53 +3.4 1,080,972 + MPMX20_01027 0.55 +1.7 1,081,064 - MPMX20_01027 0.62 +2.1 1,081,083 - MPMX20_01027 0.64 +2.7 1,081,090 + MPMX20_01027 0.64 -0.4 1,081,100 + MPMX20_01027 0.65 -2.2 1,081,108 - MPMX20_01027 0.66 +2.5 1,081,398 + MPMX20_01027 0.88 +1.5 1,081,463 - -1.6 1,081,487 + +1.0 1,081,634 - +0.2 1,081,634 - +5.0 1,081,634 - +0.3 1,081,634 - -2.5 1,081,634 - +1.8 1,081,709 - -0.2 1,081,713 + +0.9 1,081,713 + +0.7 1,081,721 - +2.2 1,081,721 - -0.5 1,081,721 - -0.0 1,081,721 - -1.2 1,081,721 - +1.4 1,081,767 + +2.1 1,081,775 - +1.1 1,081,826 - -1.0 1,081,834 + -0.0 1,081,866 - +0.6 1,081,884 + MPMX20_01028 0.11 +0.6 1,081,892 - MPMX20_01028 0.12 +2.0 1,081,976 - MPMX20_01028 0.26 +1.0 1,082,108 + MPMX20_01028 0.47 +1.0 1,082,175 + MPMX20_01028 0.58 -0.2 1,082,175 + MPMX20_01028 0.58 +0.2 1,082,175 + MPMX20_01028 0.58 +1.4 1,082,175 + MPMX20_01028 0.58 +0.2 1,082,237 - MPMX20_01028 0.67 +1.4 1,082,344 - MPMX20_01028 0.85 +0.2 1,082,530 - +1.2 1,082,535 + +0.3
Or see this region's nucleotide sequence