Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00970

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00969 and MPMX20_00970 are separated by 103 nucleotidesMPMX20_00970 and MPMX20_00971 are separated by 25 nucleotides MPMX20_00969: MPMX20_00969 - D-alanine--D-alanine ligase A, at 1,021,150 to 1,022,250 _00969 MPMX20_00970: MPMX20_00970 - hypothetical protein, at 1,022,354 to 1,023,037 _00970 MPMX20_00971: MPMX20_00971 - Staphyloferrin B transporter, at 1,023,063 to 1,024,421 _00971 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1021.380 kb on + strand, within MPMX20_00969at 1021.443 kb on + strand, within MPMX20_00969at 1021.509 kb on - strand, within MPMX20_00969at 1021.523 kb on + strand, within MPMX20_00969at 1021.541 kb on + strand, within MPMX20_00969at 1021.554 kb on - strand, within MPMX20_00969at 1021.558 kb on + strand, within MPMX20_00969at 1021.630 kb on - strand, within MPMX20_00969at 1021.722 kb on - strand, within MPMX20_00969at 1021.744 kb on + strand, within MPMX20_00969at 1021.749 kb on + strand, within MPMX20_00969at 1021.749 kb on + strand, within MPMX20_00969at 1021.754 kb on + strand, within MPMX20_00969at 1021.789 kb on + strand, within MPMX20_00969at 1021.797 kb on - strand, within MPMX20_00969at 1021.797 kb on - strand, within MPMX20_00969at 1021.807 kb on - strand, within MPMX20_00969at 1021.849 kb on + strand, within MPMX20_00969at 1021.857 kb on + strand, within MPMX20_00969at 1021.857 kb on + strand, within MPMX20_00969at 1021.865 kb on - strand, within MPMX20_00969at 1021.891 kb on - strand, within MPMX20_00969at 1021.935 kb on + strand, within MPMX20_00969at 1021.935 kb on - strand, within MPMX20_00969at 1021.996 kb on + strand, within MPMX20_00969at 1022.001 kb on + strand, within MPMX20_00969at 1022.024 kb on + strand, within MPMX20_00969at 1022.141 kb on - strandat 1022.196 kb on - strandat 1022.205 kb on + strandat 1022.224 kb on + strandat 1022.259 kb on + strandat 1022.267 kb on - strandat 1022.267 kb on - strandat 1022.304 kb on - strandat 1022.342 kb on + strandat 1022.475 kb on + strand, within MPMX20_00970at 1022.475 kb on + strand, within MPMX20_00970at 1022.483 kb on - strand, within MPMX20_00970at 1022.507 kb on + strand, within MPMX20_00970at 1022.515 kb on - strand, within MPMX20_00970at 1022.515 kb on - strand, within MPMX20_00970at 1022.564 kb on - strand, within MPMX20_00970at 1022.574 kb on - strand, within MPMX20_00970at 1022.580 kb on + strand, within MPMX20_00970at 1022.580 kb on + strand, within MPMX20_00970at 1022.588 kb on - strand, within MPMX20_00970at 1022.590 kb on - strand, within MPMX20_00970at 1022.631 kb on - strand, within MPMX20_00970at 1022.687 kb on - strand, within MPMX20_00970at 1022.699 kb on + strand, within MPMX20_00970at 1022.712 kb on - strand, within MPMX20_00970at 1022.813 kb on + strand, within MPMX20_00970at 1022.916 kb on + strand, within MPMX20_00970at 1022.925 kb on - strand, within MPMX20_00970at 1022.961 kb on + strand, within MPMX20_00970at 1022.972 kb on + strandat 1022.972 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.974 kb on + strandat 1022.980 kb on - strandat 1022.982 kb on - strandat 1022.982 kb on - strandat 1022.982 kb on - strandat 1022.982 kb on - strandat 1022.982 kb on - strandat 1022.982 kb on - strandat 1022.984 kb on + strandat 1022.992 kb on - strandat 1022.997 kb on + strandat 1023.007 kb on + strandat 1023.018 kb on + strandat 1023.018 kb on + strandat 1023.018 kb on + strandat 1023.026 kb on - strandat 1023.026 kb on - strandat 1023.026 kb on - strandat 1023.026 kb on - strandat 1023.026 kb on - strandat 1023.026 kb on - strandat 1023.047 kb on - strandat 1023.241 kb on + strand, within MPMX20_00971at 1023.279 kb on + strand, within MPMX20_00971at 1023.279 kb on + strand, within MPMX20_00971at 1023.304 kb on + strand, within MPMX20_00971at 1023.304 kb on + strand, within MPMX20_00971at 1023.325 kb on + strand, within MPMX20_00971at 1023.351 kb on + strand, within MPMX20_00971at 1023.351 kb on + strand, within MPMX20_00971at 1023.359 kb on - strand, within MPMX20_00971at 1023.359 kb on - strand, within MPMX20_00971at 1023.372 kb on + strand, within MPMX20_00971at 1023.404 kb on + strand, within MPMX20_00971at 1023.426 kb on + strand, within MPMX20_00971at 1023.441 kb on - strand, within MPMX20_00971at 1023.441 kb on - strand, within MPMX20_00971at 1023.464 kb on + strand, within MPMX20_00971at 1023.488 kb on - strand, within MPMX20_00971at 1023.500 kb on - strand, within MPMX20_00971at 1023.534 kb on + strand, within MPMX20_00971at 1023.577 kb on + strand, within MPMX20_00971at 1023.585 kb on - strand, within MPMX20_00971at 1023.585 kb on - strand, within MPMX20_00971at 1023.620 kb on + strand, within MPMX20_00971at 1023.620 kb on + strand, within MPMX20_00971at 1023.628 kb on - strand, within MPMX20_00971at 1023.628 kb on - strand, within MPMX20_00971at 1023.628 kb on - strand, within MPMX20_00971at 1023.630 kb on + strand, within MPMX20_00971at 1023.630 kb on + strand, within MPMX20_00971at 1023.630 kb on + strand, within MPMX20_00971at 1023.633 kb on - strand, within MPMX20_00971at 1023.664 kb on - strand, within MPMX20_00971at 1023.685 kb on + strand, within MPMX20_00971at 1023.702 kb on + strand, within MPMX20_00971at 1023.710 kb on - strand, within MPMX20_00971at 1023.830 kb on + strand, within MPMX20_00971at 1023.835 kb on + strand, within MPMX20_00971at 1023.835 kb on + strand, within MPMX20_00971at 1023.835 kb on + strand, within MPMX20_00971at 1023.840 kb on + strand, within MPMX20_00971at 1023.843 kb on - strand, within MPMX20_00971at 1023.890 kb on + strand, within MPMX20_00971at 1023.899 kb on - strand, within MPMX20_00971at 1023.933 kb on + strand, within MPMX20_00971at 1023.989 kb on - strand, within MPMX20_00971at 1023.999 kb on - strand, within MPMX20_00971at 1024.037 kb on + strand, within MPMX20_00971

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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1,021,380 + MPMX20_00969 0.21 -2.0
1,021,443 + MPMX20_00969 0.27 -1.8
1,021,509 - MPMX20_00969 0.33 -1.9
1,021,523 + MPMX20_00969 0.34 -1.4
1,021,541 + MPMX20_00969 0.36 +0.7
1,021,554 - MPMX20_00969 0.37 -0.9
1,021,558 + MPMX20_00969 0.37 -2.0
1,021,630 - MPMX20_00969 0.44 +1.1
1,021,722 - MPMX20_00969 0.52 +0.3
1,021,744 + MPMX20_00969 0.54 -0.4
1,021,749 + MPMX20_00969 0.54 +1.2
1,021,749 + MPMX20_00969 0.54 -1.1
1,021,754 + MPMX20_00969 0.55 -2.6
1,021,789 + MPMX20_00969 0.58 -1.2
1,021,797 - MPMX20_00969 0.59 -2.6
1,021,797 - MPMX20_00969 0.59 -0.1
1,021,807 - MPMX20_00969 0.60 +1.3
1,021,849 + MPMX20_00969 0.63 -1.0
1,021,857 + MPMX20_00969 0.64 +0.6
1,021,857 + MPMX20_00969 0.64 -1.4
1,021,865 - MPMX20_00969 0.65 -0.2
1,021,891 - MPMX20_00969 0.67 +0.7
1,021,935 + MPMX20_00969 0.71 -1.7
1,021,935 - MPMX20_00969 0.71 -1.2
1,021,996 + MPMX20_00969 0.77 +2.9
1,022,001 + MPMX20_00969 0.77 +0.8
1,022,024 + MPMX20_00969 0.79 -0.7
1,022,141 - -1.6
1,022,196 - +1.3
1,022,205 + -0.1
1,022,224 + +2.5
1,022,259 + -2.5
1,022,267 - +0.9
1,022,267 - -0.5
1,022,304 - -0.1
1,022,342 + +3.6
1,022,475 + MPMX20_00970 0.18 +4.8
1,022,475 + MPMX20_00970 0.18 +1.3
1,022,483 - MPMX20_00970 0.19 -1.5
1,022,507 + MPMX20_00970 0.22 +1.2
1,022,515 - MPMX20_00970 0.24 +0.0
1,022,515 - MPMX20_00970 0.24 +0.7
1,022,564 - MPMX20_00970 0.31 -0.8
1,022,574 - MPMX20_00970 0.32 +0.8
1,022,580 + MPMX20_00970 0.33 -1.0
1,022,580 + MPMX20_00970 0.33 -0.1
1,022,588 - MPMX20_00970 0.34 -1.1
1,022,590 - MPMX20_00970 0.35 -0.6
1,022,631 - MPMX20_00970 0.40 +1.0
1,022,687 - MPMX20_00970 0.49 -1.0
1,022,699 + MPMX20_00970 0.50 -0.5
1,022,712 - MPMX20_00970 0.52 -0.9
1,022,813 + MPMX20_00970 0.67 +3.7
1,022,916 + MPMX20_00970 0.82 +1.9
1,022,925 - MPMX20_00970 0.83 +0.9
1,022,961 + MPMX20_00970 0.89 +2.0
1,022,972 + +0.3
1,022,972 + +0.9
1,022,974 + +0.2
1,022,974 + -0.4
1,022,974 + -0.7
1,022,974 + -1.0
1,022,974 + -3.1
1,022,974 + -3.9
1,022,974 + +0.9
1,022,974 + -2.2
1,022,974 + +0.5
1,022,974 + +0.3
1,022,974 + -1.4
1,022,980 - +1.5
1,022,982 - +0.6
1,022,982 - -1.8
1,022,982 - +1.2
1,022,982 - +0.4
1,022,982 - -2.1
1,022,982 - -0.3
1,022,984 + -0.7
1,022,992 - -0.2
1,022,997 + -0.1
1,023,007 + -0.6
1,023,018 + +0.8
1,023,018 + +0.6
1,023,018 + +2.2
1,023,026 - -0.7
1,023,026 - +0.8
1,023,026 - +0.5
1,023,026 - +1.9
1,023,026 - +1.7
1,023,026 - -0.1
1,023,047 - -2.7
1,023,241 + MPMX20_00971 0.13 -1.1
1,023,279 + MPMX20_00971 0.16 -0.4
1,023,279 + MPMX20_00971 0.16 -2.0
1,023,304 + MPMX20_00971 0.18 -2.2
1,023,304 + MPMX20_00971 0.18 -0.8
1,023,325 + MPMX20_00971 0.19 -0.2
1,023,351 + MPMX20_00971 0.21 +1.3
1,023,351 + MPMX20_00971 0.21 +0.9
1,023,359 - MPMX20_00971 0.22 +1.0
1,023,359 - MPMX20_00971 0.22 +0.2
1,023,372 + MPMX20_00971 0.23 +0.6
1,023,404 + MPMX20_00971 0.25 -0.1
1,023,426 + MPMX20_00971 0.27 -2.4
1,023,441 - MPMX20_00971 0.28 -0.8
1,023,441 - MPMX20_00971 0.28 +0.6
1,023,464 + MPMX20_00971 0.30 -0.4
1,023,488 - MPMX20_00971 0.31 +1.0
1,023,500 - MPMX20_00971 0.32 -1.6
1,023,534 + MPMX20_00971 0.35 +0.6
1,023,577 + MPMX20_00971 0.38 -1.3
1,023,585 - MPMX20_00971 0.38 +0.1
1,023,585 - MPMX20_00971 0.38 +1.2
1,023,620 + MPMX20_00971 0.41 +4.5
1,023,620 + MPMX20_00971 0.41 -1.9
1,023,628 - MPMX20_00971 0.42 -2.5
1,023,628 - MPMX20_00971 0.42 -0.6
1,023,628 - MPMX20_00971 0.42 -0.7
1,023,630 + MPMX20_00971 0.42 +0.5
1,023,630 + MPMX20_00971 0.42 -1.3
1,023,630 + MPMX20_00971 0.42 +2.2
1,023,633 - MPMX20_00971 0.42 +3.1
1,023,664 - MPMX20_00971 0.44 -2.9
1,023,685 + MPMX20_00971 0.46 -4.1
1,023,702 + MPMX20_00971 0.47 +1.9
1,023,710 - MPMX20_00971 0.48 +0.6
1,023,830 + MPMX20_00971 0.56 -1.4
1,023,835 + MPMX20_00971 0.57 +1.1
1,023,835 + MPMX20_00971 0.57 -1.8
1,023,835 + MPMX20_00971 0.57 -0.4
1,023,840 + MPMX20_00971 0.57 +0.1
1,023,843 - MPMX20_00971 0.57 -0.5
1,023,890 + MPMX20_00971 0.61 -0.6
1,023,899 - MPMX20_00971 0.62 +1.2
1,023,933 + MPMX20_00971 0.64 -1.6
1,023,989 - MPMX20_00971 0.68 +1.3
1,023,999 - MPMX20_00971 0.69 +0.5
1,024,037 + MPMX20_00971 0.72 +1.2

Or see this region's nucleotide sequence