Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00969 and MPMX20_00970 are separated by 103 nucleotides MPMX20_00970 and MPMX20_00971 are separated by 25 nucleotides
MPMX20_00969: MPMX20_00969 - D-alanine--D-alanine ligase A, at 1,021,150 to 1,022,250
_00969
MPMX20_00970: MPMX20_00970 - hypothetical protein, at 1,022,354 to 1,023,037
_00970
MPMX20_00971: MPMX20_00971 - Staphyloferrin B transporter, at 1,023,063 to 1,024,421
_00971
Position (kb)
1022
1023
1024 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1021.380 kb on + strand, within MPMX20_00969 at 1021.443 kb on + strand, within MPMX20_00969 at 1021.509 kb on - strand, within MPMX20_00969 at 1021.523 kb on + strand, within MPMX20_00969 at 1021.541 kb on + strand, within MPMX20_00969 at 1021.554 kb on - strand, within MPMX20_00969 at 1021.558 kb on + strand, within MPMX20_00969 at 1021.630 kb on - strand, within MPMX20_00969 at 1021.722 kb on - strand, within MPMX20_00969 at 1021.744 kb on + strand, within MPMX20_00969 at 1021.749 kb on + strand, within MPMX20_00969 at 1021.749 kb on + strand, within MPMX20_00969 at 1021.754 kb on + strand, within MPMX20_00969 at 1021.789 kb on + strand, within MPMX20_00969 at 1021.797 kb on - strand, within MPMX20_00969 at 1021.797 kb on - strand, within MPMX20_00969 at 1021.807 kb on - strand, within MPMX20_00969 at 1021.849 kb on + strand, within MPMX20_00969 at 1021.857 kb on + strand, within MPMX20_00969 at 1021.857 kb on + strand, within MPMX20_00969 at 1021.865 kb on - strand, within MPMX20_00969 at 1021.891 kb on - strand, within MPMX20_00969 at 1021.935 kb on + strand, within MPMX20_00969 at 1021.935 kb on - strand, within MPMX20_00969 at 1021.996 kb on + strand, within MPMX20_00969 at 1022.001 kb on + strand, within MPMX20_00969 at 1022.024 kb on + strand, within MPMX20_00969 at 1022.141 kb on - strand at 1022.196 kb on - strand at 1022.205 kb on + strand at 1022.224 kb on + strand at 1022.259 kb on + strand at 1022.267 kb on - strand at 1022.267 kb on - strand at 1022.304 kb on - strand at 1022.342 kb on + strand at 1022.475 kb on + strand, within MPMX20_00970 at 1022.475 kb on + strand, within MPMX20_00970 at 1022.483 kb on - strand, within MPMX20_00970 at 1022.507 kb on + strand, within MPMX20_00970 at 1022.515 kb on - strand, within MPMX20_00970 at 1022.515 kb on - strand, within MPMX20_00970 at 1022.564 kb on - strand, within MPMX20_00970 at 1022.574 kb on - strand, within MPMX20_00970 at 1022.580 kb on + strand, within MPMX20_00970 at 1022.580 kb on + strand, within MPMX20_00970 at 1022.588 kb on - strand, within MPMX20_00970 at 1022.590 kb on - strand, within MPMX20_00970 at 1022.631 kb on - strand, within MPMX20_00970 at 1022.687 kb on - strand, within MPMX20_00970 at 1022.699 kb on + strand, within MPMX20_00970 at 1022.712 kb on - strand, within MPMX20_00970 at 1022.813 kb on + strand, within MPMX20_00970 at 1022.916 kb on + strand, within MPMX20_00970 at 1022.925 kb on - strand, within MPMX20_00970 at 1022.961 kb on + strand, within MPMX20_00970 at 1022.972 kb on + strand at 1022.972 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.974 kb on + strand at 1022.980 kb on - strand at 1022.982 kb on - strand at 1022.982 kb on - strand at 1022.982 kb on - strand at 1022.982 kb on - strand at 1022.982 kb on - strand at 1022.982 kb on - strand at 1022.984 kb on + strand at 1022.992 kb on - strand at 1022.997 kb on + strand at 1023.007 kb on + strand at 1023.018 kb on + strand at 1023.018 kb on + strand at 1023.018 kb on + strand at 1023.026 kb on - strand at 1023.026 kb on - strand at 1023.026 kb on - strand at 1023.026 kb on - strand at 1023.026 kb on - strand at 1023.026 kb on - strand at 1023.047 kb on - strand at 1023.241 kb on + strand, within MPMX20_00971 at 1023.279 kb on + strand, within MPMX20_00971 at 1023.279 kb on + strand, within MPMX20_00971 at 1023.304 kb on + strand, within MPMX20_00971 at 1023.304 kb on + strand, within MPMX20_00971 at 1023.325 kb on + strand, within MPMX20_00971 at 1023.351 kb on + strand, within MPMX20_00971 at 1023.351 kb on + strand, within MPMX20_00971 at 1023.359 kb on - strand, within MPMX20_00971 at 1023.359 kb on - strand, within MPMX20_00971 at 1023.372 kb on + strand, within MPMX20_00971 at 1023.404 kb on + strand, within MPMX20_00971 at 1023.426 kb on + strand, within MPMX20_00971 at 1023.441 kb on - strand, within MPMX20_00971 at 1023.441 kb on - strand, within MPMX20_00971 at 1023.464 kb on + strand, within MPMX20_00971 at 1023.488 kb on - strand, within MPMX20_00971 at 1023.500 kb on - strand, within MPMX20_00971 at 1023.534 kb on + strand, within MPMX20_00971 at 1023.577 kb on + strand, within MPMX20_00971 at 1023.585 kb on - strand, within MPMX20_00971 at 1023.585 kb on - strand, within MPMX20_00971 at 1023.620 kb on + strand, within MPMX20_00971 at 1023.620 kb on + strand, within MPMX20_00971 at 1023.628 kb on - strand, within MPMX20_00971 at 1023.628 kb on - strand, within MPMX20_00971 at 1023.628 kb on - strand, within MPMX20_00971 at 1023.630 kb on + strand, within MPMX20_00971 at 1023.630 kb on + strand, within MPMX20_00971 at 1023.630 kb on + strand, within MPMX20_00971 at 1023.633 kb on - strand, within MPMX20_00971 at 1023.664 kb on - strand, within MPMX20_00971 at 1023.685 kb on + strand, within MPMX20_00971 at 1023.702 kb on + strand, within MPMX20_00971 at 1023.710 kb on - strand, within MPMX20_00971 at 1023.830 kb on + strand, within MPMX20_00971 at 1023.835 kb on + strand, within MPMX20_00971 at 1023.835 kb on + strand, within MPMX20_00971 at 1023.835 kb on + strand, within MPMX20_00971 at 1023.840 kb on + strand, within MPMX20_00971 at 1023.843 kb on - strand, within MPMX20_00971 at 1023.890 kb on + strand, within MPMX20_00971 at 1023.899 kb on - strand, within MPMX20_00971 at 1023.933 kb on + strand, within MPMX20_00971 at 1023.989 kb on - strand, within MPMX20_00971 at 1023.999 kb on - strand, within MPMX20_00971 at 1024.037 kb on + strand, within MPMX20_00971
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 1,021,380 + MPMX20_00969 0.21 -2.0 1,021,443 + MPMX20_00969 0.27 -1.8 1,021,509 - MPMX20_00969 0.33 -1.9 1,021,523 + MPMX20_00969 0.34 -1.4 1,021,541 + MPMX20_00969 0.36 +0.7 1,021,554 - MPMX20_00969 0.37 -0.9 1,021,558 + MPMX20_00969 0.37 -2.0 1,021,630 - MPMX20_00969 0.44 +1.1 1,021,722 - MPMX20_00969 0.52 +0.3 1,021,744 + MPMX20_00969 0.54 -0.4 1,021,749 + MPMX20_00969 0.54 +1.2 1,021,749 + MPMX20_00969 0.54 -1.1 1,021,754 + MPMX20_00969 0.55 -2.6 1,021,789 + MPMX20_00969 0.58 -1.2 1,021,797 - MPMX20_00969 0.59 -2.6 1,021,797 - MPMX20_00969 0.59 -0.1 1,021,807 - MPMX20_00969 0.60 +1.3 1,021,849 + MPMX20_00969 0.63 -1.0 1,021,857 + MPMX20_00969 0.64 +0.6 1,021,857 + MPMX20_00969 0.64 -1.4 1,021,865 - MPMX20_00969 0.65 -0.2 1,021,891 - MPMX20_00969 0.67 +0.7 1,021,935 + MPMX20_00969 0.71 -1.7 1,021,935 - MPMX20_00969 0.71 -1.2 1,021,996 + MPMX20_00969 0.77 +2.9 1,022,001 + MPMX20_00969 0.77 +0.8 1,022,024 + MPMX20_00969 0.79 -0.7 1,022,141 - -1.6 1,022,196 - +1.3 1,022,205 + -0.1 1,022,224 + +2.5 1,022,259 + -2.5 1,022,267 - +0.9 1,022,267 - -0.5 1,022,304 - -0.1 1,022,342 + +3.6 1,022,475 + MPMX20_00970 0.18 +4.8 1,022,475 + MPMX20_00970 0.18 +1.3 1,022,483 - MPMX20_00970 0.19 -1.5 1,022,507 + MPMX20_00970 0.22 +1.2 1,022,515 - MPMX20_00970 0.24 +0.0 1,022,515 - MPMX20_00970 0.24 +0.7 1,022,564 - MPMX20_00970 0.31 -0.8 1,022,574 - MPMX20_00970 0.32 +0.8 1,022,580 + MPMX20_00970 0.33 -1.0 1,022,580 + MPMX20_00970 0.33 -0.1 1,022,588 - MPMX20_00970 0.34 -1.1 1,022,590 - MPMX20_00970 0.35 -0.6 1,022,631 - MPMX20_00970 0.40 +1.0 1,022,687 - MPMX20_00970 0.49 -1.0 1,022,699 + MPMX20_00970 0.50 -0.5 1,022,712 - MPMX20_00970 0.52 -0.9 1,022,813 + MPMX20_00970 0.67 +3.7 1,022,916 + MPMX20_00970 0.82 +1.9 1,022,925 - MPMX20_00970 0.83 +0.9 1,022,961 + MPMX20_00970 0.89 +2.0 1,022,972 + +0.3 1,022,972 + +0.9 1,022,974 + +0.2 1,022,974 + -0.4 1,022,974 + -0.7 1,022,974 + -1.0 1,022,974 + -3.1 1,022,974 + -3.9 1,022,974 + +0.9 1,022,974 + -2.2 1,022,974 + +0.5 1,022,974 + +0.3 1,022,974 + -1.4 1,022,980 - +1.5 1,022,982 - +0.6 1,022,982 - -1.8 1,022,982 - +1.2 1,022,982 - +0.4 1,022,982 - -2.1 1,022,982 - -0.3 1,022,984 + -0.7 1,022,992 - -0.2 1,022,997 + -0.1 1,023,007 + -0.6 1,023,018 + +0.8 1,023,018 + +0.6 1,023,018 + +2.2 1,023,026 - -0.7 1,023,026 - +0.8 1,023,026 - +0.5 1,023,026 - +1.9 1,023,026 - +1.7 1,023,026 - -0.1 1,023,047 - -2.7 1,023,241 + MPMX20_00971 0.13 -1.1 1,023,279 + MPMX20_00971 0.16 -0.4 1,023,279 + MPMX20_00971 0.16 -2.0 1,023,304 + MPMX20_00971 0.18 -2.2 1,023,304 + MPMX20_00971 0.18 -0.8 1,023,325 + MPMX20_00971 0.19 -0.2 1,023,351 + MPMX20_00971 0.21 +1.3 1,023,351 + MPMX20_00971 0.21 +0.9 1,023,359 - MPMX20_00971 0.22 +1.0 1,023,359 - MPMX20_00971 0.22 +0.2 1,023,372 + MPMX20_00971 0.23 +0.6 1,023,404 + MPMX20_00971 0.25 -0.1 1,023,426 + MPMX20_00971 0.27 -2.4 1,023,441 - MPMX20_00971 0.28 -0.8 1,023,441 - MPMX20_00971 0.28 +0.6 1,023,464 + MPMX20_00971 0.30 -0.4 1,023,488 - MPMX20_00971 0.31 +1.0 1,023,500 - MPMX20_00971 0.32 -1.6 1,023,534 + MPMX20_00971 0.35 +0.6 1,023,577 + MPMX20_00971 0.38 -1.3 1,023,585 - MPMX20_00971 0.38 +0.1 1,023,585 - MPMX20_00971 0.38 +1.2 1,023,620 + MPMX20_00971 0.41 +4.5 1,023,620 + MPMX20_00971 0.41 -1.9 1,023,628 - MPMX20_00971 0.42 -2.5 1,023,628 - MPMX20_00971 0.42 -0.6 1,023,628 - MPMX20_00971 0.42 -0.7 1,023,630 + MPMX20_00971 0.42 +0.5 1,023,630 + MPMX20_00971 0.42 -1.3 1,023,630 + MPMX20_00971 0.42 +2.2 1,023,633 - MPMX20_00971 0.42 +3.1 1,023,664 - MPMX20_00971 0.44 -2.9 1,023,685 + MPMX20_00971 0.46 -4.1 1,023,702 + MPMX20_00971 0.47 +1.9 1,023,710 - MPMX20_00971 0.48 +0.6 1,023,830 + MPMX20_00971 0.56 -1.4 1,023,835 + MPMX20_00971 0.57 +1.1 1,023,835 + MPMX20_00971 0.57 -1.8 1,023,835 + MPMX20_00971 0.57 -0.4 1,023,840 + MPMX20_00971 0.57 +0.1 1,023,843 - MPMX20_00971 0.57 -0.5 1,023,890 + MPMX20_00971 0.61 -0.6 1,023,899 - MPMX20_00971 0.62 +1.2 1,023,933 + MPMX20_00971 0.64 -1.6 1,023,989 - MPMX20_00971 0.68 +1.3 1,023,999 - MPMX20_00971 0.69 +0.5 1,024,037 + MPMX20_00971 0.72 +1.2
Or see this region's nucleotide sequence