Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00614

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00612 and MPMX20_00613 are separated by 102 nucleotidesMPMX20_00613 and MPMX20_00614 overlap by 14 nucleotidesMPMX20_00614 and MPMX20_00615 are separated by 100 nucleotides MPMX20_00612: MPMX20_00612 - HTH-type transcriptional regulatory protein GabR, at 638,176 to 639,564 _00612 MPMX20_00613: MPMX20_00613 - hypothetical protein, at 639,667 to 640,146 _00613 MPMX20_00614: MPMX20_00614 - HTH-type transcriptional regulator PgrR, at 640,133 to 641,035 _00614 MPMX20_00615: MPMX20_00615 - Putative aldehyde dehydrogenase, at 641,136 to 642,551 _00615 Position (kb) 640 641 642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 639.262 kb on + strand, within MPMX20_00612at 639.262 kb on + strand, within MPMX20_00612at 639.298 kb on + strand, within MPMX20_00612at 639.324 kb on + strand, within MPMX20_00612at 639.331 kb on + strand, within MPMX20_00612at 639.332 kb on - strand, within MPMX20_00612at 639.354 kb on + strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.381 kb on + strand, within MPMX20_00612at 639.408 kb on - strand, within MPMX20_00612at 639.408 kb on - strand, within MPMX20_00612at 639.449 kb on + strandat 639.449 kb on + strandat 639.449 kb on + strandat 639.457 kb on - strandat 639.535 kb on + strandat 639.543 kb on - strandat 639.543 kb on - strandat 639.604 kb on + strandat 639.633 kb on + strandat 639.701 kb on - strandat 639.701 kb on - strandat 639.706 kb on - strandat 639.720 kb on + strand, within MPMX20_00613at 639.726 kb on + strand, within MPMX20_00613at 639.806 kb on + strand, within MPMX20_00613at 639.826 kb on - strand, within MPMX20_00613at 639.830 kb on + strand, within MPMX20_00613at 639.830 kb on - strand, within MPMX20_00613at 639.876 kb on - strand, within MPMX20_00613at 639.936 kb on - strand, within MPMX20_00613at 639.936 kb on - strand, within MPMX20_00613at 639.995 kb on - strand, within MPMX20_00613at 640.000 kb on + strand, within MPMX20_00613at 640.003 kb on - strand, within MPMX20_00613at 640.033 kb on - strand, within MPMX20_00613at 640.060 kb on + strand, within MPMX20_00613at 640.114 kb on + strandat 640.133 kb on - strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.262 kb on + strand, within MPMX20_00614at 640.262 kb on + strand, within MPMX20_00614at 640.392 kb on - strand, within MPMX20_00614at 640.425 kb on - strand, within MPMX20_00614at 640.439 kb on - strand, within MPMX20_00614at 640.486 kb on - strand, within MPMX20_00614at 640.530 kb on + strand, within MPMX20_00614at 640.730 kb on - strand, within MPMX20_00614at 640.737 kb on - strand, within MPMX20_00614at 640.754 kb on + strand, within MPMX20_00614at 640.770 kb on + strand, within MPMX20_00614at 640.793 kb on + strand, within MPMX20_00614at 640.813 kb on + strand, within MPMX20_00614at 640.833 kb on + strand, within MPMX20_00614at 640.838 kb on + strand, within MPMX20_00614at 640.841 kb on - strand, within MPMX20_00614at 640.858 kb on + strand, within MPMX20_00614at 640.866 kb on - strand, within MPMX20_00614at 640.894 kb on + strand, within MPMX20_00614at 640.968 kb on - strandat 640.995 kb on + strandat 641.005 kb on + strandat 641.028 kb on - strandat 641.107 kb on - strandat 641.151 kb on - strandat 641.198 kb on - strandat 641.431 kb on + strand, within MPMX20_00615at 641.433 kb on + strand, within MPMX20_00615at 641.474 kb on - strand, within MPMX20_00615at 641.530 kb on + strand, within MPMX20_00615at 641.578 kb on + strand, within MPMX20_00615at 641.583 kb on + strand, within MPMX20_00615at 641.583 kb on + strand, within MPMX20_00615at 641.591 kb on - strand, within MPMX20_00615at 641.591 kb on - strand, within MPMX20_00615at 641.621 kb on + strand, within MPMX20_00615at 641.717 kb on + strand, within MPMX20_00615at 641.738 kb on + strand, within MPMX20_00615at 641.738 kb on + strand, within MPMX20_00615at 641.746 kb on - strand, within MPMX20_00615at 641.804 kb on + strand, within MPMX20_00615at 641.836 kb on - strand, within MPMX20_00615at 641.845 kb on + strand, within MPMX20_00615at 641.853 kb on - strand, within MPMX20_00615at 641.853 kb on - strand, within MPMX20_00615at 641.963 kb on + strand, within MPMX20_00615

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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639,262 + MPMX20_00612 0.78 +1.3
639,262 + MPMX20_00612 0.78 -1.3
639,298 + MPMX20_00612 0.81 -1.2
639,324 + MPMX20_00612 0.83 -0.3
639,331 + MPMX20_00612 0.83 -1.3
639,332 - MPMX20_00612 0.83 +0.7
639,354 + MPMX20_00612 0.85 -3.3
639,362 - MPMX20_00612 0.85 -0.7
639,362 - MPMX20_00612 0.85 -0.0
639,362 - MPMX20_00612 0.85 -1.3
639,381 + MPMX20_00612 0.87 +1.4
639,408 - MPMX20_00612 0.89 +1.0
639,408 - MPMX20_00612 0.89 -1.5
639,449 + +1.8
639,449 + +0.3
639,449 + -2.3
639,457 - +0.3
639,535 + +0.6
639,543 - +0.6
639,543 - -2.4
639,604 + -0.0
639,633 + +1.9
639,701 - +1.4
639,701 - +0.3
639,706 - -2.7
639,720 + MPMX20_00613 0.11 +2.6
639,726 + MPMX20_00613 0.12 -1.4
639,806 + MPMX20_00613 0.29 -0.4
639,826 - MPMX20_00613 0.33 -1.0
639,830 + MPMX20_00613 0.34 -1.4
639,830 - MPMX20_00613 0.34 -0.3
639,876 - MPMX20_00613 0.44 -0.6
639,936 - MPMX20_00613 0.56 -2.0
639,936 - MPMX20_00613 0.56 -2.1
639,995 - MPMX20_00613 0.68 -0.1
640,000 + MPMX20_00613 0.69 -0.4
640,003 - MPMX20_00613 0.70 -1.1
640,033 - MPMX20_00613 0.76 +0.7
640,060 + MPMX20_00613 0.82 -0.3
640,114 + -0.4
640,133 - -1.7
640,212 - +3.4
640,212 - -1.9
640,262 + MPMX20_00614 0.14 +1.3
640,262 + MPMX20_00614 0.14 -0.6
640,392 - MPMX20_00614 0.29 +4.6
640,425 - MPMX20_00614 0.32 -2.5
640,439 - MPMX20_00614 0.34 +3.0
640,486 - MPMX20_00614 0.39 -0.1
640,530 + MPMX20_00614 0.44 -1.0
640,730 - MPMX20_00614 0.66 -1.4
640,737 - MPMX20_00614 0.67 -1.3
640,754 + MPMX20_00614 0.69 -0.3
640,770 + MPMX20_00614 0.71 -0.7
640,793 + MPMX20_00614 0.73 +2.3
640,813 + MPMX20_00614 0.75 +1.3
640,833 + MPMX20_00614 0.78 +1.9
640,838 + MPMX20_00614 0.78 +0.6
640,841 - MPMX20_00614 0.78 +0.1
640,858 + MPMX20_00614 0.80 -1.7
640,866 - MPMX20_00614 0.81 +0.4
640,894 + MPMX20_00614 0.84 +1.5
640,968 - +0.2
640,995 + +0.6
641,005 + +0.2
641,028 - -0.7
641,107 - -0.9
641,151 - -0.4
641,198 - +0.1
641,431 + MPMX20_00615 0.21 +0.2
641,433 + MPMX20_00615 0.21 +0.9
641,474 - MPMX20_00615 0.24 +0.3
641,530 + MPMX20_00615 0.28 +0.1
641,578 + MPMX20_00615 0.31 -0.3
641,583 + MPMX20_00615 0.32 -1.5
641,583 + MPMX20_00615 0.32 -1.0
641,591 - MPMX20_00615 0.32 -1.3
641,591 - MPMX20_00615 0.32 -0.0
641,621 + MPMX20_00615 0.34 +2.0
641,717 + MPMX20_00615 0.41 +0.7
641,738 + MPMX20_00615 0.43 -1.5
641,738 + MPMX20_00615 0.43 +1.3
641,746 - MPMX20_00615 0.43 +0.4
641,804 + MPMX20_00615 0.47 -0.4
641,836 - MPMX20_00615 0.49 +0.8
641,845 + MPMX20_00615 0.50 +0.3
641,853 - MPMX20_00615 0.51 +0.4
641,853 - MPMX20_00615 0.51 -1.2
641,963 + MPMX20_00615 0.58 -1.2

Or see this region's nucleotide sequence