Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00485

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00484 and MPMX20_00485 are separated by 65 nucleotidesMPMX20_00485 and MPMX20_00486 are separated by 246 nucleotides MPMX20_00484: MPMX20_00484 - D-serine/D-alanine/glycine transporter, at 496,400 to 497,809 _00484 MPMX20_00485: MPMX20_00485 - Iron-sulfur cluster repair protein YtfE, at 497,875 to 498,537 _00485 MPMX20_00486: MPMX20_00486 - Methyl-accepting chemotaxis protein I, at 498,784 to 500,433 _00486 Position (kb) 497 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 496.882 kb on + strand, within MPMX20_00484at 496.895 kb on - strand, within MPMX20_00484at 496.895 kb on - strand, within MPMX20_00484at 496.957 kb on + strand, within MPMX20_00484at 496.982 kb on - strand, within MPMX20_00484at 497.063 kb on + strand, within MPMX20_00484at 497.079 kb on + strand, within MPMX20_00484at 497.087 kb on - strand, within MPMX20_00484at 497.097 kb on - strand, within MPMX20_00484at 497.097 kb on - strand, within MPMX20_00484at 497.097 kb on - strand, within MPMX20_00484at 497.151 kb on - strand, within MPMX20_00484at 497.174 kb on - strand, within MPMX20_00484at 497.191 kb on + strand, within MPMX20_00484at 497.221 kb on - strand, within MPMX20_00484at 497.223 kb on + strand, within MPMX20_00484at 497.223 kb on + strand, within MPMX20_00484at 497.231 kb on - strand, within MPMX20_00484at 497.231 kb on - strand, within MPMX20_00484at 497.266 kb on + strand, within MPMX20_00484at 497.269 kb on - strand, within MPMX20_00484at 497.275 kb on + strand, within MPMX20_00484at 497.275 kb on + strand, within MPMX20_00484at 497.306 kb on + strand, within MPMX20_00484at 497.306 kb on + strand, within MPMX20_00484at 497.306 kb on + strand, within MPMX20_00484at 497.314 kb on - strand, within MPMX20_00484at 497.342 kb on - strand, within MPMX20_00484at 497.355 kb on + strand, within MPMX20_00484at 497.363 kb on - strand, within MPMX20_00484at 497.363 kb on - strand, within MPMX20_00484at 497.363 kb on - strand, within MPMX20_00484at 497.385 kb on + strand, within MPMX20_00484at 497.385 kb on + strand, within MPMX20_00484at 497.393 kb on - strand, within MPMX20_00484at 497.393 kb on - strand, within MPMX20_00484at 497.413 kb on + strand, within MPMX20_00484at 497.421 kb on - strand, within MPMX20_00484at 497.421 kb on - strand, within MPMX20_00484at 497.421 kb on - strand, within MPMX20_00484at 497.421 kb on - strand, within MPMX20_00484at 497.421 kb on - strand, within MPMX20_00484at 497.438 kb on + strand, within MPMX20_00484at 497.469 kb on + strand, within MPMX20_00484at 497.472 kb on - strand, within MPMX20_00484at 497.495 kb on - strand, within MPMX20_00484at 497.543 kb on - strand, within MPMX20_00484at 497.545 kb on + strand, within MPMX20_00484at 497.554 kb on + strand, within MPMX20_00484at 497.569 kb on + strand, within MPMX20_00484at 497.585 kb on + strand, within MPMX20_00484at 497.601 kb on + strand, within MPMX20_00484at 497.601 kb on + strand, within MPMX20_00484at 497.609 kb on - strand, within MPMX20_00484at 497.648 kb on + strand, within MPMX20_00484at 497.712 kb on + strandat 497.748 kb on - strandat 497.754 kb on + strandat 497.759 kb on + strandat 497.845 kb on + strandat 497.853 kb on - strandat 497.853 kb on - strandat 497.894 kb on + strandat 497.902 kb on - strandat 497.902 kb on - strandat 497.902 kb on - strandat 497.918 kb on + strandat 497.921 kb on - strandat 497.923 kb on + strandat 497.926 kb on - strandat 497.965 kb on + strand, within MPMX20_00485at 497.973 kb on - strand, within MPMX20_00485at 497.984 kb on + strand, within MPMX20_00485at 497.984 kb on + strand, within MPMX20_00485at 497.992 kb on - strand, within MPMX20_00485at 498.003 kb on + strand, within MPMX20_00485at 498.003 kb on + strand, within MPMX20_00485at 498.101 kb on + strand, within MPMX20_00485at 498.101 kb on + strand, within MPMX20_00485at 498.101 kb on + strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.130 kb on + strand, within MPMX20_00485at 498.162 kb on + strand, within MPMX20_00485at 498.257 kb on + strand, within MPMX20_00485at 498.321 kb on - strand, within MPMX20_00485at 498.332 kb on - strand, within MPMX20_00485at 498.332 kb on - strand, within MPMX20_00485at 498.365 kb on - strand, within MPMX20_00485at 498.380 kb on + strand, within MPMX20_00485at 498.410 kb on - strand, within MPMX20_00485at 498.423 kb on - strand, within MPMX20_00485at 498.431 kb on - strand, within MPMX20_00485at 498.431 kb on - strand, within MPMX20_00485at 498.451 kb on - strand, within MPMX20_00485at 498.456 kb on - strand, within MPMX20_00485at 498.456 kb on - strand, within MPMX20_00485at 498.532 kb on + strandat 498.532 kb on + strandat 498.532 kb on + strandat 498.540 kb on - strandat 498.547 kb on - strandat 498.596 kb on + strandat 498.597 kb on + strandat 498.604 kb on - strandat 498.605 kb on - strandat 498.605 kb on - strandat 498.714 kb on + strandat 498.717 kb on - strandat 498.751 kb on - strandat 498.754 kb on + strandat 498.762 kb on - strandat 498.786 kb on + strandat 498.801 kb on + strandat 498.802 kb on + strandat 498.802 kb on - strandat 498.811 kb on - strandat 498.813 kb on + strandat 498.834 kb on + strandat 498.915 kb on + strandat 498.915 kb on + strandat 498.930 kb on - strandat 498.940 kb on - strandat 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.962 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.972 kb on - strand, within MPMX20_00486at 498.974 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.982 kb on - strand, within MPMX20_00486at 498.982 kb on - strand, within MPMX20_00486at 498.982 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 499.026 kb on + strand, within MPMX20_00486at 499.034 kb on - strand, within MPMX20_00486at 499.061 kb on - strand, within MPMX20_00486at 499.063 kb on + strand, within MPMX20_00486at 499.104 kb on + strand, within MPMX20_00486at 499.116 kb on + strand, within MPMX20_00486at 499.116 kb on + strand, within MPMX20_00486at 499.124 kb on + strand, within MPMX20_00486at 499.124 kb on - strand, within MPMX20_00486at 499.124 kb on - strand, within MPMX20_00486at 499.124 kb on - strand, within MPMX20_00486at 499.140 kb on + strand, within MPMX20_00486at 499.170 kb on - strand, within MPMX20_00486at 499.213 kb on + strand, within MPMX20_00486at 499.223 kb on + strand, within MPMX20_00486at 499.286 kb on - strand, within MPMX20_00486at 499.286 kb on - strand, within MPMX20_00486at 499.335 kb on - strand, within MPMX20_00486at 499.368 kb on - strand, within MPMX20_00486at 499.415 kb on + strand, within MPMX20_00486at 499.430 kb on + strand, within MPMX20_00486at 499.497 kb on - strand, within MPMX20_00486

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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496,882 + MPMX20_00484 0.34 +0.9
496,895 - MPMX20_00484 0.35 -2.0
496,895 - MPMX20_00484 0.35 -1.3
496,957 + MPMX20_00484 0.40 -0.8
496,982 - MPMX20_00484 0.41 -1.2
497,063 + MPMX20_00484 0.47 -1.7
497,079 + MPMX20_00484 0.48 +0.3
497,087 - MPMX20_00484 0.49 -0.3
497,097 - MPMX20_00484 0.49 -0.6
497,097 - MPMX20_00484 0.49 -0.8
497,097 - MPMX20_00484 0.49 -0.3
497,151 - MPMX20_00484 0.53 -3.3
497,174 - MPMX20_00484 0.55 -0.2
497,191 + MPMX20_00484 0.56 -1.8
497,221 - MPMX20_00484 0.58 -2.1
497,223 + MPMX20_00484 0.58 +0.3
497,223 + MPMX20_00484 0.58 -0.6
497,231 - MPMX20_00484 0.59 +0.6
497,231 - MPMX20_00484 0.59 +0.1
497,266 + MPMX20_00484 0.61 -2.0
497,269 - MPMX20_00484 0.62 +1.9
497,275 + MPMX20_00484 0.62 +0.1
497,275 + MPMX20_00484 0.62 -1.1
497,306 + MPMX20_00484 0.64 +1.1
497,306 + MPMX20_00484 0.64 -2.0
497,306 + MPMX20_00484 0.64 -0.7
497,314 - MPMX20_00484 0.65 +2.3
497,342 - MPMX20_00484 0.67 +0.8
497,355 + MPMX20_00484 0.68 +0.8
497,363 - MPMX20_00484 0.68 -0.2
497,363 - MPMX20_00484 0.68 -0.9
497,363 - MPMX20_00484 0.68 +1.3
497,385 + MPMX20_00484 0.70 +0.3
497,385 + MPMX20_00484 0.70 +0.6
497,393 - MPMX20_00484 0.70 -1.5
497,393 - MPMX20_00484 0.70 -2.0
497,413 + MPMX20_00484 0.72 -0.4
497,421 - MPMX20_00484 0.72 -1.6
497,421 - MPMX20_00484 0.72 +0.4
497,421 - MPMX20_00484 0.72 -0.4
497,421 - MPMX20_00484 0.72 +2.4
497,421 - MPMX20_00484 0.72 -1.6
497,438 + MPMX20_00484 0.74 -3.3
497,469 + MPMX20_00484 0.76 -0.8
497,472 - MPMX20_00484 0.76 -1.6
497,495 - MPMX20_00484 0.78 +0.5
497,543 - MPMX20_00484 0.81 -0.8
497,545 + MPMX20_00484 0.81 -0.8
497,554 + MPMX20_00484 0.82 -0.3
497,569 + MPMX20_00484 0.83 +0.4
497,585 + MPMX20_00484 0.84 -0.7
497,601 + MPMX20_00484 0.85 +0.9
497,601 + MPMX20_00484 0.85 +0.6
497,609 - MPMX20_00484 0.86 +0.6
497,648 + MPMX20_00484 0.89 +0.1
497,712 + -1.3
497,748 - -1.3
497,754 + +0.1
497,759 + -0.5
497,845 + +0.3
497,853 - +0.7
497,853 - +0.0
497,894 + -0.4
497,902 - -1.5
497,902 - +1.0
497,902 - -1.4
497,918 + +0.5
497,921 - -2.6
497,923 + -1.3
497,926 - -1.6
497,965 + MPMX20_00485 0.14 -0.6
497,973 - MPMX20_00485 0.15 +1.8
497,984 + MPMX20_00485 0.16 -0.8
497,984 + MPMX20_00485 0.16 -0.3
497,992 - MPMX20_00485 0.18 -1.3
498,003 + MPMX20_00485 0.19 +0.8
498,003 + MPMX20_00485 0.19 +2.9
498,101 + MPMX20_00485 0.34 +0.2
498,101 + MPMX20_00485 0.34 +2.1
498,101 + MPMX20_00485 0.34 +0.7
498,109 - MPMX20_00485 0.35 +0.1
498,109 - MPMX20_00485 0.35 +1.3
498,109 - MPMX20_00485 0.35 -1.9
498,109 - MPMX20_00485 0.35 -2.1
498,109 - MPMX20_00485 0.35 -0.5
498,109 - MPMX20_00485 0.35 -0.2
498,130 + MPMX20_00485 0.38 +0.7
498,162 + MPMX20_00485 0.43 +3.9
498,257 + MPMX20_00485 0.58 -0.6
498,321 - MPMX20_00485 0.67 +0.5
498,332 - MPMX20_00485 0.69 +1.3
498,332 - MPMX20_00485 0.69 +0.6
498,365 - MPMX20_00485 0.74 -0.7
498,380 + MPMX20_00485 0.76 -2.1
498,410 - MPMX20_00485 0.81 +1.8
498,423 - MPMX20_00485 0.83 -0.5
498,431 - MPMX20_00485 0.84 -0.2
498,431 - MPMX20_00485 0.84 +0.3
498,451 - MPMX20_00485 0.87 +1.8
498,456 - MPMX20_00485 0.88 +0.8
498,456 - MPMX20_00485 0.88 +1.9
498,532 + +0.1
498,532 + -1.4
498,532 + +0.9
498,540 - -0.3
498,547 - -0.6
498,596 + -1.4
498,597 + +0.9
498,604 - +0.2
498,605 - -1.9
498,605 - -1.2
498,714 + +0.8
498,717 - -1.0
498,751 - +2.5
498,754 + +0.9
498,762 - +0.5
498,786 + +0.1
498,801 + +2.3
498,802 + -0.7
498,802 - -0.5
498,811 - -1.3
498,813 + -1.5
498,834 + -0.8
498,915 + -0.9
498,915 + -2.4
498,930 - +2.9
498,940 - -3.7
498,959 + MPMX20_00486 0.11 +0.7
498,959 + MPMX20_00486 0.11 +0.4
498,959 + MPMX20_00486 0.11 +0.5
498,959 + MPMX20_00486 0.11 -0.3
498,959 + MPMX20_00486 0.11 -2.3
498,959 + MPMX20_00486 0.11 -0.7
498,959 + MPMX20_00486 0.11 -0.8
498,962 - MPMX20_00486 0.11 +0.6
498,967 - MPMX20_00486 0.11 -2.0
498,967 - MPMX20_00486 0.11 +0.3
498,967 - MPMX20_00486 0.11 +0.2
498,967 - MPMX20_00486 0.11 -0.1
498,967 - MPMX20_00486 0.11 -2.3
498,972 - MPMX20_00486 0.11 -1.3
498,974 + MPMX20_00486 0.12 -1.6
498,979 + MPMX20_00486 0.12 +2.9
498,979 + MPMX20_00486 0.12 -0.9
498,979 + MPMX20_00486 0.12 -3.4
498,979 + MPMX20_00486 0.12 +0.5
498,979 + MPMX20_00486 0.12 -1.6
498,979 + MPMX20_00486 0.12 +0.9
498,982 - MPMX20_00486 0.12 -2.0
498,982 - MPMX20_00486 0.12 -0.5
498,982 - MPMX20_00486 0.12 -0.1
498,987 - MPMX20_00486 0.12 +0.5
498,987 - MPMX20_00486 0.12 -0.6
498,987 - MPMX20_00486 0.12 -0.9
498,987 - MPMX20_00486 0.12 -2.5
498,987 - MPMX20_00486 0.12 -0.1
498,987 - MPMX20_00486 0.12 -0.9
498,987 - MPMX20_00486 0.12 -1.3
499,026 + MPMX20_00486 0.15 -2.9
499,034 - MPMX20_00486 0.15 +0.3
499,061 - MPMX20_00486 0.17 +0.6
499,063 + MPMX20_00486 0.17 -1.1
499,104 + MPMX20_00486 0.19 +2.6
499,116 + MPMX20_00486 0.20 -2.6
499,116 + MPMX20_00486 0.20 -1.0
499,124 + MPMX20_00486 0.21 -1.5
499,124 - MPMX20_00486 0.21 +1.4
499,124 - MPMX20_00486 0.21 -2.5
499,124 - MPMX20_00486 0.21 -2.3
499,140 + MPMX20_00486 0.22 -0.7
499,170 - MPMX20_00486 0.23 -0.8
499,213 + MPMX20_00486 0.26 +0.0
499,223 + MPMX20_00486 0.27 +0.6
499,286 - MPMX20_00486 0.30 -1.0
499,286 - MPMX20_00486 0.30 -0.1
499,335 - MPMX20_00486 0.33 -0.4
499,368 - MPMX20_00486 0.35 +0.0
499,415 + MPMX20_00486 0.38 +0.5
499,430 + MPMX20_00486 0.39 -0.8
499,497 - MPMX20_00486 0.43 -0.3

Or see this region's nucleotide sequence