Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00458 and MPMX20_00459 are separated by 192 nucleotides MPMX20_00459 and MPMX20_00460 are separated by 38 nucleotides
MPMX20_00458: MPMX20_00458 - Adenylosuccinate synthetase, at 472,454 to 473,794
_00458
MPMX20_00459: MPMX20_00459 - HTH-type transcriptional repressor NsrR, at 473,987 to 474,412
_00459
MPMX20_00460: MPMX20_00460 - Ribonuclease R, at 474,451 to 476,892
_00460
Position (kb) 473
474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 473.804 kb on + strand at 473.804 kb on + strand at 473.812 kb on - strand at 473.812 kb on - strand at 473.944 kb on + strand at 474.008 kb on + strand at 474.028 kb on + strand at 474.028 kb on + strand at 474.028 kb on + strand at 474.028 kb on + strand at 474.036 kb on - strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.085 kb on + strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.093 kb on - strand, within MPMX20_00459 at 474.130 kb on + strand, within MPMX20_00459 at 474.149 kb on - strand, within MPMX20_00459 at 474.187 kb on + strand, within MPMX20_00459 at 474.212 kb on - strand, within MPMX20_00459 at 474.212 kb on - strand, within MPMX20_00459 at 474.294 kb on + strand, within MPMX20_00459 at 474.356 kb on - strand, within MPMX20_00459 at 474.384 kb on - strand at 474.428 kb on + strand at 474.510 kb on - strand at 474.529 kb on - strand at 474.603 kb on + strand at 474.606 kb on - strand at 474.692 kb on + strand at 474.741 kb on - strand, within MPMX20_00460 at 474.768 kb on + strand, within MPMX20_00460 at 474.782 kb on + strand, within MPMX20_00460 at 474.790 kb on - strand, within MPMX20_00460 at 474.822 kb on - strand, within MPMX20_00460 at 474.854 kb on - strand, within MPMX20_00460 at 474.882 kb on - strand, within MPMX20_00460 at 474.888 kb on + strand, within MPMX20_00460 at 474.939 kb on - strand, within MPMX20_00460 at 474.994 kb on + strand, within MPMX20_00460 at 474.996 kb on + strand, within MPMX20_00460 at 475.046 kb on + strand, within MPMX20_00460 at 475.205 kb on + strand, within MPMX20_00460 at 475.386 kb on + strand, within MPMX20_00460 at 475.389 kb on - strand, within MPMX20_00460 at 475.411 kb on - strand, within MPMX20_00460
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 473,804 + +0.3 473,804 + -0.4 473,812 - -0.4 473,812 - -0.8 473,944 + +1.2 474,008 + +2.3 474,028 + +1.2 474,028 + +1.1 474,028 + +0.3 474,028 + +0.9 474,036 - MPMX20_00459 0.12 -0.4 474,085 + MPMX20_00459 0.23 +0.9 474,085 + MPMX20_00459 0.23 +3.2 474,085 + MPMX20_00459 0.23 +0.1 474,085 + MPMX20_00459 0.23 +1.4 474,085 + MPMX20_00459 0.23 +3.4 474,085 + MPMX20_00459 0.23 +1.7 474,085 + MPMX20_00459 0.23 +0.1 474,085 + MPMX20_00459 0.23 +5.7 474,093 - MPMX20_00459 0.25 -0.6 474,093 - MPMX20_00459 0.25 +1.2 474,093 - MPMX20_00459 0.25 +2.8 474,093 - MPMX20_00459 0.25 -2.8 474,093 - MPMX20_00459 0.25 -2.7 474,093 - MPMX20_00459 0.25 +0.6 474,093 - MPMX20_00459 0.25 +0.2 474,093 - MPMX20_00459 0.25 -0.6 474,093 - MPMX20_00459 0.25 -0.5 474,093 - MPMX20_00459 0.25 -0.3 474,093 - MPMX20_00459 0.25 -0.4 474,093 - MPMX20_00459 0.25 -0.2 474,130 + MPMX20_00459 0.34 -3.0 474,149 - MPMX20_00459 0.38 +2.5 474,187 + MPMX20_00459 0.47 -0.7 474,212 - MPMX20_00459 0.53 +2.2 474,212 - MPMX20_00459 0.53 +0.3 474,294 + MPMX20_00459 0.72 +1.3 474,356 - MPMX20_00459 0.87 -0.1 474,384 - -0.7 474,428 + -1.1 474,510 - -1.9 474,529 - -0.4 474,603 + +0.3 474,606 - -2.9 474,692 + -0.6 474,741 - MPMX20_00460 0.12 +0.6 474,768 + MPMX20_00460 0.13 -0.9 474,782 + MPMX20_00460 0.14 -0.4 474,790 - MPMX20_00460 0.14 -0.9 474,822 - MPMX20_00460 0.15 -1.6 474,854 - MPMX20_00460 0.17 -0.6 474,882 - MPMX20_00460 0.18 -0.4 474,888 + MPMX20_00460 0.18 -0.1 474,939 - MPMX20_00460 0.20 -0.1 474,994 + MPMX20_00460 0.22 -1.9 474,996 + MPMX20_00460 0.22 +1.4 475,046 + MPMX20_00460 0.24 -3.5 475,205 + MPMX20_00460 0.31 -0.8 475,386 + MPMX20_00460 0.38 -1.2 475,389 - MPMX20_00460 0.38 -2.3 475,411 - MPMX20_00460 0.39 -1.4
Or see this region's nucleotide sequence