Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00456 and MPMX20_00457 are separated by 71 nucleotides MPMX20_00457 and MPMX20_00458 are separated by 62 nucleotides
MPMX20_00456: MPMX20_00456 - Modulator of FtsH protease HflC, at 471,118 to 472,122
_00456
MPMX20_00457: MPMX20_00457 - hypothetical protein, at 472,194 to 472,391
_00457
MPMX20_00458: MPMX20_00458 - Adenylosuccinate synthetase, at 472,454 to 473,794
_00458
Position (kb) 472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 471.276 kb on - strand, within MPMX20_00456 at 471.291 kb on + strand, within MPMX20_00456 at 471.325 kb on - strand, within MPMX20_00456 at 471.410 kb on - strand, within MPMX20_00456 at 471.428 kb on + strand, within MPMX20_00456 at 471.428 kb on + strand, within MPMX20_00456 at 471.590 kb on - strand, within MPMX20_00456 at 471.663 kb on - strand, within MPMX20_00456 at 471.705 kb on + strand, within MPMX20_00456 at 471.705 kb on + strand, within MPMX20_00456 at 471.713 kb on - strand, within MPMX20_00456 at 471.715 kb on + strand, within MPMX20_00456 at 471.715 kb on - strand, within MPMX20_00456 at 471.723 kb on - strand, within MPMX20_00456 at 471.743 kb on + strand, within MPMX20_00456 at 471.774 kb on + strand, within MPMX20_00456 at 471.784 kb on + strand, within MPMX20_00456 at 471.842 kb on + strand, within MPMX20_00456 at 471.898 kb on - strand, within MPMX20_00456 at 471.928 kb on - strand, within MPMX20_00456 at 471.928 kb on - strand, within MPMX20_00456 at 471.935 kb on + strand, within MPMX20_00456 at 471.993 kb on - strand, within MPMX20_00456 at 472.104 kb on + strand at 472.104 kb on + strand at 472.104 kb on + strand at 472.141 kb on + strand at 472.210 kb on + strand at 472.220 kb on + strand, within MPMX20_00457 at 472.243 kb on + strand, within MPMX20_00457 at 472.243 kb on + strand, within MPMX20_00457 at 472.243 kb on + strand, within MPMX20_00457 at 472.280 kb on + strand, within MPMX20_00457 at 472.288 kb on - strand, within MPMX20_00457 at 472.291 kb on + strand, within MPMX20_00457 at 472.336 kb on + strand, within MPMX20_00457 at 472.336 kb on + strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457 at 472.344 kb on - strand, within MPMX20_00457
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 471,276 - MPMX20_00456 0.16 -0.8 471,291 + MPMX20_00456 0.17 -0.2 471,325 - MPMX20_00456 0.21 +1.3 471,410 - MPMX20_00456 0.29 -1.0 471,428 + MPMX20_00456 0.31 -0.8 471,428 + MPMX20_00456 0.31 -0.3 471,590 - MPMX20_00456 0.47 -1.3 471,663 - MPMX20_00456 0.54 -3.0 471,705 + MPMX20_00456 0.58 -2.7 471,705 + MPMX20_00456 0.58 -1.6 471,713 - MPMX20_00456 0.59 +2.1 471,715 + MPMX20_00456 0.59 +1.9 471,715 - MPMX20_00456 0.59 -0.0 471,723 - MPMX20_00456 0.60 +0.1 471,743 + MPMX20_00456 0.62 -1.3 471,774 + MPMX20_00456 0.65 -1.4 471,784 + MPMX20_00456 0.66 -0.2 471,842 + MPMX20_00456 0.72 -0.2 471,898 - MPMX20_00456 0.78 -1.0 471,928 - MPMX20_00456 0.81 -2.0 471,928 - MPMX20_00456 0.81 -1.2 471,935 + MPMX20_00456 0.81 -2.0 471,993 - MPMX20_00456 0.87 +0.6 472,104 + -1.0 472,104 + -0.1 472,104 + -1.2 472,141 + -0.9 472,210 + +0.4 472,220 + MPMX20_00457 0.13 +0.1 472,243 + MPMX20_00457 0.25 -1.3 472,243 + MPMX20_00457 0.25 +2.6 472,243 + MPMX20_00457 0.25 +1.3 472,280 + MPMX20_00457 0.43 +2.1 472,288 - MPMX20_00457 0.47 -1.2 472,291 + MPMX20_00457 0.49 +0.6 472,336 + MPMX20_00457 0.72 +1.7 472,336 + MPMX20_00457 0.72 +1.3 472,344 - MPMX20_00457 0.76 -0.7 472,344 - MPMX20_00457 0.76 -0.4 472,344 - MPMX20_00457 0.76 +1.0 472,344 - MPMX20_00457 0.76 -1.6
Or see this region's nucleotide sequence