Experiment: LB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02543 and MPMX20_02544 are separated by 136 nucleotides MPMX20_02544 and MPMX20_02545 are separated by 37 nucleotides MPMX20_02545 and MPMX20_02546 are separated by 248 nucleotides
MPMX20_02543: MPMX20_02543 - NADH dehydrogenase-like protein, at 2,681,457 to 2,682,662
_02543
MPMX20_02544: MPMX20_02544 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX, at 2,682,799 to 2,683,551
_02544
MPMX20_02545: MPMX20_02545 - hypothetical protein, at 2,683,589 to 2,683,936
_02545
MPMX20_02546: MPMX20_02546 - hypothetical protein, at 2,684,185 to 2,685,075
_02546
Position (kb)
2683
2684 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2682.595 kb on - strand at 2682.595 kb on - strand at 2682.595 kb on - strand at 2682.595 kb on - strand at 2682.595 kb on - strand at 2682.622 kb on - strand at 2682.623 kb on - strand at 2682.678 kb on - strand at 2682.678 kb on - strand at 2682.678 kb on - strand at 2682.678 kb on - strand at 2682.678 kb on - strand at 2682.678 kb on - strand at 2682.713 kb on - strand at 2682.714 kb on - strand at 2682.729 kb on - strand at 2682.792 kb on - strand at 2682.804 kb on - strand at 2682.806 kb on - strand at 2682.839 kb on - strand at 2682.839 kb on - strand at 2682.851 kb on - strand at 2682.851 kb on - strand at 2682.851 kb on - strand at 2682.851 kb on - strand at 2682.861 kb on - strand at 2682.861 kb on - strand at 2682.879 kb on - strand, within MPMX20_02544 at 2682.879 kb on - strand, within MPMX20_02544 at 2682.879 kb on - strand, within MPMX20_02544 at 2682.879 kb on - strand, within MPMX20_02544 at 2682.889 kb on - strand, within MPMX20_02544 at 2682.891 kb on - strand, within MPMX20_02544 at 2682.894 kb on + strand, within MPMX20_02544 at 2682.902 kb on - strand, within MPMX20_02544 at 2682.902 kb on - strand, within MPMX20_02544 at 2682.902 kb on - strand, within MPMX20_02544 at 2682.907 kb on - strand, within MPMX20_02544 at 2682.913 kb on + strand, within MPMX20_02544 at 2682.921 kb on - strand, within MPMX20_02544 at 2682.926 kb on - strand, within MPMX20_02544 at 2682.929 kb on - strand, within MPMX20_02544 at 2683.004 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.005 kb on + strand, within MPMX20_02544 at 2683.011 kb on + strand, within MPMX20_02544 at 2683.030 kb on + strand, within MPMX20_02544 at 2683.040 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.041 kb on + strand, within MPMX20_02544 at 2683.053 kb on + strand, within MPMX20_02544 at 2683.055 kb on + strand, within MPMX20_02544 at 2683.063 kb on + strand, within MPMX20_02544 at 2683.065 kb on + strand, within MPMX20_02544 at 2683.085 kb on + strand, within MPMX20_02544 at 2683.085 kb on + strand, within MPMX20_02544 at 2683.085 kb on + strand, within MPMX20_02544 at 2683.097 kb on + strand, within MPMX20_02544 at 2683.097 kb on + strand, within MPMX20_02544 at 2683.097 kb on + strand, within MPMX20_02544 at 2683.131 kb on + strand, within MPMX20_02544 at 2683.131 kb on + strand, within MPMX20_02544 at 2683.485 kb on - strand at 2683.577 kb on - strand at 2683.593 kb on - strand at 2683.599 kb on - strand at 2683.599 kb on - strand at 2683.600 kb on - strand at 2683.601 kb on - strand at 2683.601 kb on - strand at 2683.653 kb on - strand, within MPMX20_02545 at 2683.653 kb on - strand, within MPMX20_02545 at 2683.658 kb on - strand, within MPMX20_02545 at 2683.658 kb on - strand, within MPMX20_02545 at 2683.658 kb on - strand, within MPMX20_02545 at 2683.658 kb on - strand, within MPMX20_02545 at 2683.677 kb on - strand, within MPMX20_02545 at 2683.677 kb on - strand, within MPMX20_02545 at 2683.682 kb on - strand, within MPMX20_02545 at 2683.687 kb on - strand, within MPMX20_02545 at 2683.687 kb on - strand, within MPMX20_02545 at 2683.687 kb on - strand, within MPMX20_02545 at 2683.687 kb on - strand, within MPMX20_02545 at 2683.687 kb on - strand, within MPMX20_02545 at 2683.692 kb on - strand, within MPMX20_02545 at 2683.692 kb on - strand, within MPMX20_02545 at 2683.692 kb on - strand, within MPMX20_02545 at 2683.692 kb on - strand, within MPMX20_02545 at 2683.692 kb on - strand, within MPMX20_02545 at 2683.699 kb on - strand, within MPMX20_02545 at 2683.699 kb on - strand, within MPMX20_02545 at 2683.699 kb on - strand, within MPMX20_02545 at 2683.704 kb on - strand, within MPMX20_02545 at 2683.719 kb on - strand, within MPMX20_02545 at 2683.727 kb on - strand, within MPMX20_02545 at 2683.745 kb on - strand, within MPMX20_02545 at 2683.756 kb on + strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.764 kb on - strand, within MPMX20_02545 at 2683.794 kb on - strand, within MPMX20_02545 at 2683.829 kb on - strand, within MPMX20_02545 at 2683.844 kb on - strand, within MPMX20_02545 at 2683.847 kb on - strand, within MPMX20_02545 at 2683.873 kb on - strand, within MPMX20_02545 at 2683.873 kb on - strand, within MPMX20_02545 at 2683.884 kb on - strand, within MPMX20_02545 at 2683.896 kb on - strand, within MPMX20_02545 at 2683.896 kb on - strand, within MPMX20_02545 at 2683.896 kb on - strand, within MPMX20_02545 at 2683.899 kb on - strand, within MPMX20_02545 at 2683.913 kb on - strand at 2683.913 kb on - strand at 2683.921 kb on + strand at 2683.921 kb on + strand at 2683.921 kb on + strand at 2683.921 kb on + strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.929 kb on - strand at 2683.938 kb on + strand at 2683.945 kb on + strand at 2683.946 kb on - strand at 2683.946 kb on - strand at 2683.946 kb on - strand at 2683.946 kb on - strand at 2683.955 kb on + strand at 2683.956 kb on - strand at 2683.961 kb on + strand at 2683.961 kb on + strand at 2683.961 kb on - strand at 2683.963 kb on + strand at 2683.963 kb on + strand at 2683.963 kb on + strand at 2683.968 kb on + strand at 2683.969 kb on - strand at 2683.969 kb on - strand at 2683.971 kb on - strand at 2683.971 kb on - strand at 2683.971 kb on - strand at 2683.971 kb on - strand at 2683.971 kb on - strand at 2683.971 kb on - strand at 2683.988 kb on + strand at 2683.993 kb on + strand at 2683.995 kb on + strand at 2684.000 kb on + strand at 2684.014 kb on - strand at 2684.123 kb on + strand at 2684.123 kb on + strand at 2684.123 kb on + strand at 2684.127 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.132 kb on + strand at 2684.135 kb on - strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.137 kb on + strand at 2684.147 kb on + strand at 2684.155 kb on + strand at 2684.155 kb on + strand at 2684.155 kb on + strand at 2684.155 kb on + strand at 2684.155 kb on + strand at 2684.155 kb on + strand at 2684.158 kb on + strand at 2684.180 kb on + strand at 2684.267 kb on + strand at 2684.350 kb on + strand, within MPMX20_02546 at 2684.355 kb on + strand, within MPMX20_02546 at 2684.498 kb on + strand, within MPMX20_02546 at 2684.506 kb on - strand, within MPMX20_02546 at 2684.828 kb on + strand, within MPMX20_02546
Per-strain Table
Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 2,682,595 - -0.3 2,682,595 - +1.3 2,682,595 - -0.1 2,682,595 - +0.6 2,682,595 - -0.5 2,682,622 - -1.6 2,682,623 - +1.3 2,682,678 - +0.9 2,682,678 - -2.1 2,682,678 - -1.5 2,682,678 - +0.5 2,682,678 - +1.9 2,682,678 - +1.9 2,682,713 - +0.9 2,682,714 - +0.5 2,682,729 - +0.5 2,682,792 - -1.2 2,682,804 - +1.3 2,682,806 - +2.0 2,682,839 - +1.3 2,682,839 - -0.9 2,682,851 - +1.9 2,682,851 - -0.7 2,682,851 - -2.0 2,682,851 - +1.3 2,682,861 - +0.9 2,682,861 - -1.7 2,682,879 - MPMX20_02544 0.11 +0.3 2,682,879 - MPMX20_02544 0.11 -0.9 2,682,879 - MPMX20_02544 0.11 -0.7 2,682,879 - MPMX20_02544 0.11 -1.7 2,682,889 - MPMX20_02544 0.12 -2.2 2,682,891 - MPMX20_02544 0.12 -0.4 2,682,894 + MPMX20_02544 0.13 -0.6 2,682,902 - MPMX20_02544 0.14 -1.3 2,682,902 - MPMX20_02544 0.14 -2.2 2,682,902 - MPMX20_02544 0.14 +1.9 2,682,907 - MPMX20_02544 0.14 -0.7 2,682,913 + MPMX20_02544 0.15 +0.9 2,682,921 - MPMX20_02544 0.16 -3.4 2,682,926 - MPMX20_02544 0.17 +1.9 2,682,929 - MPMX20_02544 0.17 +1.3 2,683,004 + MPMX20_02544 0.27 +0.9 2,683,005 + MPMX20_02544 0.27 +3.9 2,683,005 + MPMX20_02544 0.27 +0.4 2,683,005 + MPMX20_02544 0.27 -1.5 2,683,005 + MPMX20_02544 0.27 -0.4 2,683,005 + MPMX20_02544 0.27 -0.7 2,683,005 + MPMX20_02544 0.27 +0.7 2,683,005 + MPMX20_02544 0.27 +0.2 2,683,005 + MPMX20_02544 0.27 -1.6 2,683,005 + MPMX20_02544 0.27 +1.7 2,683,005 + MPMX20_02544 0.27 +0.9 2,683,005 + MPMX20_02544 0.27 +3.8 2,683,005 + MPMX20_02544 0.27 -1.5 2,683,005 + MPMX20_02544 0.27 +1.7 2,683,005 + MPMX20_02544 0.27 -1.6 2,683,005 + MPMX20_02544 0.27 +0.9 2,683,005 + MPMX20_02544 0.27 -0.5 2,683,005 + MPMX20_02544 0.27 -2.0 2,683,005 + MPMX20_02544 0.27 -2.8 2,683,005 + MPMX20_02544 0.27 -2.0 2,683,005 + MPMX20_02544 0.27 +0.1 2,683,005 + MPMX20_02544 0.27 -1.5 2,683,011 + MPMX20_02544 0.28 -2.5 2,683,030 + MPMX20_02544 0.31 +2.9 2,683,040 + MPMX20_02544 0.32 -1.0 2,683,041 + MPMX20_02544 0.32 +0.9 2,683,041 + MPMX20_02544 0.32 -2.3 2,683,041 + MPMX20_02544 0.32 -1.6 2,683,041 + MPMX20_02544 0.32 -3.0 2,683,041 + MPMX20_02544 0.32 -0.6 2,683,041 + MPMX20_02544 0.32 +0.1 2,683,041 + MPMX20_02544 0.32 +2.9 2,683,041 + MPMX20_02544 0.32 +3.9 2,683,041 + MPMX20_02544 0.32 -0.8 2,683,041 + MPMX20_02544 0.32 -0.8 2,683,053 + MPMX20_02544 0.34 +0.5 2,683,055 + MPMX20_02544 0.34 -2.1 2,683,063 + MPMX20_02544 0.35 -3.1 2,683,065 + MPMX20_02544 0.35 +1.3 2,683,085 + MPMX20_02544 0.38 -0.7 2,683,085 + MPMX20_02544 0.38 -1.0 2,683,085 + MPMX20_02544 0.38 +2.9 2,683,097 + MPMX20_02544 0.40 -3.2 2,683,097 + MPMX20_02544 0.40 +0.4 2,683,097 + MPMX20_02544 0.40 +0.3 2,683,131 + MPMX20_02544 0.44 -0.1 2,683,131 + MPMX20_02544 0.44 +2.9 2,683,485 - -1.1 2,683,577 - +0.5 2,683,593 - -0.3 2,683,599 - -1.5 2,683,599 - -0.1 2,683,600 - -1.0 2,683,601 - -0.9 2,683,601 - -0.8 2,683,653 - MPMX20_02545 0.18 -2.0 2,683,653 - MPMX20_02545 0.18 -0.9 2,683,658 - MPMX20_02545 0.20 +0.9 2,683,658 - MPMX20_02545 0.20 -1.3 2,683,658 - MPMX20_02545 0.20 +0.3 2,683,658 - MPMX20_02545 0.20 -0.8 2,683,677 - MPMX20_02545 0.25 +0.3 2,683,677 - MPMX20_02545 0.25 -1.5 2,683,682 - MPMX20_02545 0.27 -1.9 2,683,687 - MPMX20_02545 0.28 +0.3 2,683,687 - MPMX20_02545 0.28 -1.8 2,683,687 - MPMX20_02545 0.28 -1.1 2,683,687 - MPMX20_02545 0.28 -2.3 2,683,687 - MPMX20_02545 0.28 +1.3 2,683,692 - MPMX20_02545 0.30 -0.3 2,683,692 - MPMX20_02545 0.30 -1.5 2,683,692 - MPMX20_02545 0.30 -1.7 2,683,692 - MPMX20_02545 0.30 -0.1 2,683,692 - MPMX20_02545 0.30 -1.2 2,683,699 - MPMX20_02545 0.32 +1.4 2,683,699 - MPMX20_02545 0.32 -1.5 2,683,699 - MPMX20_02545 0.32 -0.1 2,683,704 - MPMX20_02545 0.33 -0.5 2,683,719 - MPMX20_02545 0.37 -1.2 2,683,727 - MPMX20_02545 0.40 -1.8 2,683,745 - MPMX20_02545 0.45 -1.5 2,683,756 + MPMX20_02545 0.48 -1.3 2,683,764 - MPMX20_02545 0.50 -1.0 2,683,764 - MPMX20_02545 0.50 -0.3 2,683,764 - MPMX20_02545 0.50 -3.0 2,683,764 - MPMX20_02545 0.50 +0.9 2,683,764 - MPMX20_02545 0.50 -0.9 2,683,764 - MPMX20_02545 0.50 -0.9 2,683,764 - MPMX20_02545 0.50 -1.4 2,683,764 - MPMX20_02545 0.50 +0.5 2,683,764 - MPMX20_02545 0.50 -1.4 2,683,794 - MPMX20_02545 0.59 -1.0 2,683,829 - MPMX20_02545 0.69 +0.5 2,683,844 - MPMX20_02545 0.73 -1.3 2,683,847 - MPMX20_02545 0.74 -0.5 2,683,873 - MPMX20_02545 0.82 -0.7 2,683,873 - MPMX20_02545 0.82 +0.4 2,683,884 - MPMX20_02545 0.85 -0.7 2,683,896 - MPMX20_02545 0.88 +0.4 2,683,896 - MPMX20_02545 0.88 -2.4 2,683,896 - MPMX20_02545 0.88 +0.1 2,683,899 - MPMX20_02545 0.89 -0.2 2,683,913 - +1.2 2,683,913 - -2.2 2,683,921 + +1.3 2,683,921 + +0.9 2,683,921 + -2.9 2,683,921 + -0.3 2,683,929 - -0.6 2,683,929 - -0.7 2,683,929 - +0.3 2,683,929 - -1.5 2,683,929 - -1.4 2,683,929 - -1.7 2,683,929 - +2.5 2,683,929 - -1.7 2,683,929 - -0.1 2,683,929 - +0.3 2,683,929 - +0.1 2,683,929 - -0.5 2,683,938 + +0.9 2,683,945 + +5.6 2,683,946 - -0.5 2,683,946 - -0.6 2,683,946 - -1.4 2,683,946 - -1.7 2,683,955 + -0.9 2,683,956 - -1.5 2,683,961 + -0.1 2,683,961 + -1.7 2,683,961 - +1.5 2,683,963 + -0.7 2,683,963 + +0.1 2,683,963 + +0.1 2,683,968 + -0.8 2,683,969 - +0.1 2,683,969 - -0.3 2,683,971 - -0.9 2,683,971 - -0.6 2,683,971 - +0.3 2,683,971 - -1.0 2,683,971 - -0.1 2,683,971 - +1.3 2,683,988 + +0.3 2,683,993 + -1.8 2,683,995 + +2.9 2,684,000 + -1.5 2,684,014 - +0.3 2,684,123 + -1.7 2,684,123 + +1.1 2,684,123 + -0.3 2,684,127 + -0.9 2,684,132 + -0.9 2,684,132 + +0.3 2,684,132 + +1.9 2,684,132 + +2.9 2,684,132 + +1.3 2,684,132 + +1.5 2,684,132 + +0.9 2,684,132 + -0.8 2,684,132 + -1.1 2,684,132 + +1.3 2,684,135 - -0.1 2,684,137 + +0.9 2,684,137 + -0.7 2,684,137 + +1.4 2,684,137 + +1.9 2,684,137 + -0.9 2,684,137 + -0.1 2,684,137 + +0.5 2,684,137 + +0.5 2,684,137 + +0.5 2,684,137 + -1.8 2,684,137 + -0.3 2,684,147 + +0.8 2,684,155 + +0.1 2,684,155 + -1.3 2,684,155 + +0.9 2,684,155 + +0.9 2,684,155 + +0.3 2,684,155 + +1.9 2,684,158 + -2.7 2,684,180 + -2.0 2,684,267 + +1.9 2,684,350 + MPMX20_02546 0.19 +1.3 2,684,355 + MPMX20_02546 0.19 +0.5 2,684,498 + MPMX20_02546 0.35 +1.9 2,684,506 - MPMX20_02546 0.36 -1.5 2,684,828 + MPMX20_02546 0.72 +0.9
Or see this region's nucleotide sequence