Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15550

Experiment: Time0_washed

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_washed
3,431,088	-		LRK54_RS15540	0.32	-0.1
3,431,088	-		LRK54_RS15540	0.32	+1.8
3,431,372	+				+0.3
3,431,372	+				+0.5
3,431,421	+				+0.6
3,431,422	-				+0.4
3,431,422	-				+0.6
3,431,422	-				+1.6
3,431,422	-				+0.7
3,431,513	+				+0.2
3,431,513	+				+0.6
3,431,513	+				+0.1
3,431,513	+				-1.1
3,431,513	+				+1.1
3,431,513	+				+0.6
3,431,514	-				+0.2
3,431,514	-				+2.6
3,431,612	+		LRK54_RS15545	0.21	-0.4
3,431,612	+		LRK54_RS15545	0.21	-0.1
3,431,612	+		LRK54_RS15545	0.21	-1.7
3,431,612	+		LRK54_RS15545	0.21	+0.0
3,431,612	+		LRK54_RS15545	0.21	-0.6
3,431,612	+		LRK54_RS15545	0.21	-0.2
3,431,612	+		LRK54_RS15545	0.21	+1.8
3,431,612	+		LRK54_RS15545	0.21	+0.2
3,431,612	+		LRK54_RS15545	0.21	-0.2
3,431,612	+		LRK54_RS15545	0.21	-1.0
3,431,612	+		LRK54_RS15545	0.21	-1.1
3,431,612	+		LRK54_RS15545	0.21	-1.0
3,431,612	+		LRK54_RS15545	0.21	-2.2
3,431,613	-		LRK54_RS15545	0.21	+0.6
3,431,613	-		LRK54_RS15545	0.21	+0.2
3,431,613	-		LRK54_RS15545	0.21	+0.4
3,431,613	-		LRK54_RS15545	0.21	-0.6
3,431,613	-		LRK54_RS15545	0.21	-1.6
3,431,613	-		LRK54_RS15545	0.21	-0.4
3,431,613	-		LRK54_RS15545	0.21	+0.4
3,431,613	-		LRK54_RS15545	0.21	-0.2
3,431,613	-		LRK54_RS15545	0.21	-0.4
3,431,613	-		LRK54_RS15545	0.21	-0.2
3,431,613	-		LRK54_RS15545	0.21	-1.4
3,431,613	-		LRK54_RS15545	0.21	+0.4
3,431,613	-		LRK54_RS15545	0.21	+0.3
3,431,613	-		LRK54_RS15545	0.21	-0.5
3,431,613	-		LRK54_RS15545	0.21	-1.0
3,431,613	-		LRK54_RS15545	0.21	-0.8
3,431,613	-		LRK54_RS15545	0.21	+0.2
3,431,613	-		LRK54_RS15545	0.21	-0.0
3,431,613	-		LRK54_RS15545	0.21	+1.6
3,431,672	+		LRK54_RS15545	0.31	-0.0
3,431,673	-		LRK54_RS15545	0.31	-0.6
3,431,673	-		LRK54_RS15545	0.31	+2.8
3,431,747	+		LRK54_RS15545	0.44	+0.6
3,431,747	+		LRK54_RS15545	0.44	-0.3
3,431,747	+		LRK54_RS15545	0.44	+0.0
3,431,748	-		LRK54_RS15545	0.44	+1.6
3,431,748	-		LRK54_RS15545	0.44	-0.2
3,431,748	-		LRK54_RS15545	0.44	-0.6
3,431,748	-		LRK54_RS15545	0.44	-1.0
3,431,748	-		LRK54_RS15545	0.44	-0.8
3,431,807	+		LRK54_RS15545	0.54	-0.6
3,431,807	+		LRK54_RS15545	0.54	-0.1
3,431,807	+		LRK54_RS15545	0.54	-0.4
3,431,807	+		LRK54_RS15545	0.54	-1.7
3,431,807	+		LRK54_RS15545	0.54	+0.4
3,431,807	+		LRK54_RS15545	0.54	+0.2
3,431,808	-		LRK54_RS15545	0.54	+1.1
3,431,808	-		LRK54_RS15545	0.54	+0.6
3,431,808	-		LRK54_RS15545	0.54	+0.6
3,431,808	-		LRK54_RS15545	0.54	-1.3
3,431,808	-		LRK54_RS15545	0.54	+0.5
3,431,828	+		LRK54_RS15545	0.57	-0.7
3,431,828	+		LRK54_RS15545	0.57	-0.5
3,431,828	+		LRK54_RS15545	0.57	+0.9
3,431,829	-		LRK54_RS15545	0.57	+0.0
3,431,829	-		LRK54_RS15545	0.57	+0.4
3,431,829	-		LRK54_RS15545	0.57	+0.0
3,431,829	-		LRK54_RS15545	0.57	-1.6
3,431,933	+		LRK54_RS15545	0.75	-1.6
3,431,934	-		LRK54_RS15545	0.75	-1.0
3,431,934	-		LRK54_RS15545	0.75	+0.6
3,431,934	-		LRK54_RS15545	0.75	+1.4
3,432,005	+		LRK54_RS15545	0.87	+0.5
3,432,005	+		LRK54_RS15545	0.87	-0.8
3,432,005	+		LRK54_RS15545	0.87	-0.8
3,432,005	+		LRK54_RS15545	0.87	+1.2
3,432,005	+		LRK54_RS15545	0.87	-0.7
3,432,005	+		LRK54_RS15545	0.87	+0.3
3,432,005	+		LRK54_RS15545	0.87	-0.8
3,432,005	+		LRK54_RS15545	0.87	+1.1
3,432,005	+		LRK54_RS15545	0.87	-0.1
3,432,005	+		LRK54_RS15545	0.87	+0.0
3,432,005	+		LRK54_RS15545	0.87	-1.0
3,432,006	-		LRK54_RS15545	0.87	-0.4
3,432,006	-		LRK54_RS15545	0.87	-0.3
3,432,006	-		LRK54_RS15545	0.87	-1.4
3,432,006	-		LRK54_RS15545	0.87	+1.0
3,432,006	-		LRK54_RS15545	0.87	-0.1
3,432,006	-		LRK54_RS15545	0.87	-0.8
3,432,006	-		LRK54_RS15545	0.87	-0.6
3,432,006	-		LRK54_RS15545	0.87	-0.6
3,432,006	-		LRK54_RS15545	0.87	+0.1
3,432,053	+				-0.7
3,432,053	+				+1.6
3,432,053	+				-1.7
3,432,053	+				+1.6
3,432,054	-				-0.5
3,432,059	+				-0.3
3,432,059	+				-0.1
3,432,059	+				-0.7
3,432,059	+				-1.6
3,432,060	-				+0.9
3,432,060	-				+1.1
3,432,060	-				+1.0
3,432,060	-				-0.5
3,432,424	+		LRK54_RS15550	0.59	-1.6
3,432,424	+		LRK54_RS15550	0.59	-0.2
3,432,424	+		LRK54_RS15550	0.59	-1.0
3,432,424	+		LRK54_RS15550	0.59	-1.2
3,432,425	-		LRK54_RS15550	0.60	-1.2
3,432,425	-		LRK54_RS15550	0.60	-0.6
3,432,425	-		LRK54_RS15550	0.60	-0.2
3,432,499	+		LRK54_RS15550	0.72	-0.5
3,432,499	+		LRK54_RS15550	0.72	+0.4
3,432,499	+		LRK54_RS15550	0.72	-2.3
3,432,500	-		LRK54_RS15550	0.73	-2.3
3,432,500	-		LRK54_RS15550	0.73	-0.3
3,432,655	+				+1.6
3,432,655	+				-1.1
3,432,655	+				+2.8
3,432,655	+				-0.7
3,432,655	+				+0.6
3,432,655	+				+1.2
3,432,656	-				+0.2
3,432,773	+				+0.5
3,432,773	+				+0.9
3,432,869	-		LRK54_RS15555	0.17	+0.8
3,432,981	+		LRK54_RS15555	0.49	-1.1
3,432,981	+		LRK54_RS15555	0.49	-0.9
3,432,982	-		LRK54_RS15555	0.50	+0.1
3,432,982	-		LRK54_RS15555	0.50	+0.2
3,433,122	+				-0.1
3,433,122	+				-0.6
3,433,122	+				-1.0
3,433,122	+				+1.0
3,433,122	+				-0.7
3,433,122	+				+0.5
3,433,122	+				-1.2
3,433,122	+				+1.2
3,433,122	+				+0.6
3,433,122	+				-0.1
3,433,122	+				-0.1
3,433,123	-				-0.4
3,433,123	-				+0.9
3,433,123	-				+2.6
3,433,123	-				-1.4
3,433,123	-				+1.6
3,433,123	-				+1.0
3,433,123	-				-0.2
3,433,123	-				+0.0
3,433,124	-				+3.6
3,433,251	+				+0.6
3,433,473	+		LRK54_RS15560	0.32	+0.9
3,433,473	+		LRK54_RS15560	0.32	+0.2
3,433,473	+		LRK54_RS15560	0.32	-0.7
3,433,473	+		LRK54_RS15560	0.32	-0.1
3,433,474	-		LRK54_RS15560	0.32	+0.5
3,433,474	-		LRK54_RS15560	0.32	+1.1
3,433,485	+		LRK54_RS15560	0.34	+1.0
3,433,485	+		LRK54_RS15560	0.34	-1.0
3,433,486	-		LRK54_RS15560	0.34	-1.0
3,433,506	+		LRK54_RS15560	0.37	-0.4
3,433,506	+		LRK54_RS15560	0.37	-0.8
3,433,507	-		LRK54_RS15560	0.37	-0.3
3,433,507	-		LRK54_RS15560	0.37	+0.4
3,433,507	-		LRK54_RS15560	0.37	+0.3