Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15525

Experiment: Time0_washed

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_washed
3,427,078	+		LRK54_RS15520	0.12	+0.0
3,427,078	+		LRK54_RS15520	0.12	-0.7
3,427,079	-		LRK54_RS15520	0.12	-0.7
3,427,079	-		LRK54_RS15520	0.12	-0.4
3,427,128	+		LRK54_RS15520	0.20	+0.5
3,427,128	+		LRK54_RS15520	0.20	+0.5
3,427,128	+		LRK54_RS15520	0.20	-0.7
3,427,128	+		LRK54_RS15520	0.20	-0.6
3,427,128	+		LRK54_RS15520	0.20	-1.4
3,427,129	-		LRK54_RS15520	0.20	-0.4
3,427,129	-		LRK54_RS15520	0.20	+0.0
3,427,158	+		LRK54_RS15520	0.24	+0.9
3,427,158	+		LRK54_RS15520	0.24	-2.2
3,427,190	-		LRK54_RS15520	0.29	+0.4
3,427,401	+		LRK54_RS15520	0.60	-0.9
3,427,401	+		LRK54_RS15520	0.60	+0.2
3,427,401	+		LRK54_RS15520	0.60	-0.1
3,427,401	+		LRK54_RS15520	0.60	+0.2
3,427,401	+		LRK54_RS15520	0.60	+0.3
3,427,401	+		LRK54_RS15520	0.60	+0.5
3,427,401	+		LRK54_RS15520	0.60	-0.1
3,427,401	+		LRK54_RS15520	0.60	-0.2
3,427,401	+		LRK54_RS15520	0.60	-0.4
3,427,401	+		LRK54_RS15520	0.60	-0.3
3,427,402	-		LRK54_RS15520	0.60	+1.6
3,427,402	-		LRK54_RS15520	0.60	-1.4
3,427,402	-		LRK54_RS15520	0.60	+0.3
3,427,402	-		LRK54_RS15520	0.60	-0.8
3,427,402	-		LRK54_RS15520	0.60	+0.8
3,427,402	-		LRK54_RS15520	0.60	+0.8
3,427,402	-		LRK54_RS15520	0.60	+0.6
3,427,402	-		LRK54_RS15520	0.60	+0.0
3,427,402	-		LRK54_RS15520	0.60	+0.5
3,427,570	-		LRK54_RS15520	0.85	+0.4
3,427,633	-				+0.1
3,427,732	+				+0.1
3,427,732	+				-0.9
3,427,732	+				-1.2
3,428,295	+		LRK54_RS15525	0.34	-1.3
3,428,295	+		LRK54_RS15525	0.34	-0.0
3,428,295	+		LRK54_RS15525	0.34	-0.6
3,428,295	+		LRK54_RS15525	0.34	-0.4
3,428,296	-		LRK54_RS15525	0.34	-0.2
3,428,296	-		LRK54_RS15525	0.34	-2.6
3,428,364	+		LRK54_RS15525	0.39	+1.3
3,428,364	+		LRK54_RS15525	0.39	+0.6
3,428,364	+		LRK54_RS15525	0.39	-0.3
3,428,364	+		LRK54_RS15525	0.39	-0.8
3,428,364	+		LRK54_RS15525	0.39	+0.0
3,428,364	+		LRK54_RS15525	0.39	-0.8
3,428,364	+		LRK54_RS15525	0.39	-1.8
3,428,365	-		LRK54_RS15525	0.39	-0.0
3,428,365	-		LRK54_RS15525	0.39	-1.4
3,428,365	-		LRK54_RS15525	0.39	+0.9
3,428,379	+		LRK54_RS15525	0.40	-0.4
3,428,379	+		LRK54_RS15525	0.40	-0.4
3,428,391	+		LRK54_RS15525	0.41	-1.2
3,428,391	+		LRK54_RS15525	0.41	-1.0
3,428,391	+		LRK54_RS15525	0.41	+1.2
3,428,391	+		LRK54_RS15525	0.41	-1.2
3,428,392	-		LRK54_RS15525	0.41	+1.1
3,428,392	-		LRK54_RS15525	0.41	-0.4
3,428,392	-		LRK54_RS15525	0.41	+0.3
3,428,392	-		LRK54_RS15525	0.41	+0.4
3,428,392	-		LRK54_RS15525	0.41	-0.6
3,428,392	-		LRK54_RS15525	0.41	-0.6
3,428,679	+		LRK54_RS15525	0.62	-0.5
3,428,679	+		LRK54_RS15525	0.62	-0.1
3,428,679	+		LRK54_RS15525	0.62	+0.6
3,428,679	+		LRK54_RS15525	0.62	+1.3
3,428,680	-		LRK54_RS15525	0.62	-0.6
3,428,680	-		LRK54_RS15525	0.62	-0.1
3,428,766	-		LRK54_RS15525	0.68	-0.6
3,428,766	-		LRK54_RS15525	0.68	-1.6
3,428,772	+		LRK54_RS15525	0.69	+0.6
3,428,772	+		LRK54_RS15525	0.69	-0.1
3,428,773	-		LRK54_RS15525	0.69	-0.4
3,428,773	-		LRK54_RS15525	0.69	-1.4
3,428,773	-		LRK54_RS15525	0.69	-0.9
3,428,773	-		LRK54_RS15525	0.69	-0.6
3,428,773	-		LRK54_RS15525	0.69	-0.7
3,428,856	+		LRK54_RS15525	0.75	-0.7
3,428,856	+		LRK54_RS15525	0.75	-0.7
3,428,856	+		LRK54_RS15525	0.75	-2.9
3,428,856	+		LRK54_RS15525	0.75	-0.8
3,428,856	+		LRK54_RS15525	0.75	-0.7
3,428,856	+		LRK54_RS15525	0.75	-0.1
3,428,856	+		LRK54_RS15525	0.75	-0.6
3,428,856	+		LRK54_RS15525	0.75	-0.1
3,428,856	+		LRK54_RS15525	0.75	-1.2
3,428,856	+		LRK54_RS15525	0.75	-0.0
3,428,857	-		LRK54_RS15525	0.75	+0.0
3,428,857	-		LRK54_RS15525	0.75	-1.9
3,428,857	-		LRK54_RS15525	0.75	-0.2
3,428,857	-		LRK54_RS15525	0.75	+0.6
3,428,857	-		LRK54_RS15525	0.75	-1.4
3,428,857	-		LRK54_RS15525	0.75	+0.4
3,428,857	-		LRK54_RS15525	0.75	-1.6
3,429,270	+				+1.0
3,429,270	+				+0.5
3,429,270	+				+0.4
3,429,270	+				+0.2
3,429,270	+				-0.4
3,429,270	+				+1.1
3,429,270	+				-2.8
3,429,270	+				+0.4
3,429,270	+				-1.0
3,429,270	+				+0.6
3,429,271	-				+0.8
3,429,271	-				-0.4
3,429,271	-				-1.7
3,429,271	-				+1.0
3,429,271	-				-0.7
3,429,271	-				-0.1
3,429,271	-				+0.1
3,429,271	-				-0.3
3,429,327	+				-1.2
3,429,327	+				-0.4
3,429,327	+				-1.9
3,429,327	+				-0.6
3,429,327	+				+0.6
3,429,327	+				-0.8
3,429,327	+				-0.7
3,429,327	+				-0.2
3,429,327	+				-0.5
3,429,327	+				+0.8
3,429,327	+				-0.9
3,429,327	+				-0.8
3,429,327	+				+0.7
3,429,327	+				+0.9
3,429,327	+				+1.1
3,429,327	+				-0.4
3,429,327	+				+1.0
3,429,327	+				+1.6
3,429,327	+				-0.6
3,429,327	+				+1.0
3,429,327	+				+1.2
3,429,328	-				+0.3
3,429,328	-				+0.7
3,429,328	-				-1.0
3,429,328	-				-1.0
3,429,328	-				+0.6
3,429,328	-				-0.2
3,429,328	-				+0.1
3,429,328	-				-1.2
3,429,328	-				-0.3
3,429,328	-				+1.6
3,429,328	-				+0.5
3,429,328	-				+1.0
3,429,328	-				-1.0
3,429,328	-				-0.4
3,429,328	-				-0.4
3,429,328	-				-0.6
3,429,328	-				+0.0
3,429,328	-				+1.3
3,429,331	+				-0.3
3,429,331	+				+0.6
3,429,331	+				+0.5
3,429,331	+				+1.1
3,429,331	+				-0.7
3,429,331	+				-0.1
3,429,331	+				-2.0
3,429,331	+				-1.2
3,429,331	+				-0.8
3,429,331	+				-1.1
3,429,331	+				+1.1
3,429,332	-				-0.2
3,429,332	-				-0.2
3,429,332	-				+0.4
3,429,332	-				+1.0
3,429,332	-				-0.8
3,429,332	-				-0.4
3,429,332	-				-1.7
3,429,332	-				-1.2
3,429,332	-				+0.4
3,429,332	-				-0.2
3,429,332	-				+1.8
3,429,332	-				-0.1
3,429,342	+				+1.2
3,429,342	+				+0.3
3,429,342	+				-2.1
3,429,342	+				-0.2
3,429,342	+				+0.5
3,429,342	+				-0.1
3,429,343	-				+1.3
3,429,343	-				-0.3
3,429,343	-				-0.4
3,429,343	-				+1.0
3,429,343	-				+0.4
3,429,343	-				-0.7
3,429,343	-				-1.0
3,429,343	-				-1.9
3,429,343	-				+1.6
3,429,343	-				+1.6
3,429,406	-		LRK54_RS15530	0.24	-1.4
3,429,406	-		LRK54_RS15530	0.24	+0.3
3,429,414	+		LRK54_RS15530	0.27	+1.3
3,429,414	+		LRK54_RS15530	0.27	-1.0
3,429,414	+		LRK54_RS15530	0.27	+1.1
3,429,414	+		LRK54_RS15530	0.27	-0.5
3,429,415	-		LRK54_RS15530	0.27	+0.0
3,429,415	-		LRK54_RS15530	0.27	+0.9
3,429,415	-		LRK54_RS15530	0.27	-0.3
3,429,416	+		LRK54_RS15530	0.27	+0.9
3,429,416	+		LRK54_RS15530	0.27	-0.9
3,429,416	+		LRK54_RS15530	0.27	-0.6
3,429,416	+		LRK54_RS15530	0.27	-3.2
3,429,416	+		LRK54_RS15530	0.27	-0.4
3,429,416	+		LRK54_RS15530	0.27	-1.4
3,429,416	+		LRK54_RS15530	0.27	+0.4
3,429,416	+		LRK54_RS15530	0.27	-2.0
3,429,416	+		LRK54_RS15530	0.27	+2.6
3,429,416	+		LRK54_RS15530	0.27	+0.3
3,429,416	+		LRK54_RS15530	0.27	+0.6
3,429,416	+		LRK54_RS15530	0.27	-0.8
3,429,416	+		LRK54_RS15530	0.27	-0.2
3,429,417	-		LRK54_RS15530	0.28	-0.1
3,429,417	-		LRK54_RS15530	0.28	+1.6
3,429,417	-		LRK54_RS15530	0.28	+1.9
3,429,417	-		LRK54_RS15530	0.28	+1.0
3,429,417	-		LRK54_RS15530	0.28	-1.0
3,429,531	+		LRK54_RS15530	0.60	-0.6
3,429,531	+		LRK54_RS15530	0.60	-0.3
3,429,532	-		LRK54_RS15530	0.61	-0.4
3,429,561	+		LRK54_RS15530	0.69	-0.4
3,429,561	+		LRK54_RS15530	0.69	+0.1
3,429,562	-		LRK54_RS15530	0.69	-0.4
3,429,562	-		LRK54_RS15530	0.69	+0.2
3,429,564	+		LRK54_RS15530	0.70	+0.9
3,429,564	+		LRK54_RS15530	0.70	+0.6
3,429,564	+		LRK54_RS15530	0.70	-0.7
3,429,564	+		LRK54_RS15530	0.70	-0.1
3,429,564	+		LRK54_RS15530	0.70	-0.4
3,429,564	+		LRK54_RS15530	0.70	-0.7
3,429,564	+		LRK54_RS15530	0.70	+0.7
3,429,564	+		LRK54_RS15530	0.70	-0.8
3,429,564	+		LRK54_RS15530	0.70	-0.1
3,429,564	+		LRK54_RS15530	0.70	-1.1
3,429,564	+		LRK54_RS15530	0.70	+0.0
3,429,565	-		LRK54_RS15530	0.70	+1.2
3,429,565	-		LRK54_RS15530	0.70	-0.4
3,429,565	-		LRK54_RS15530	0.70	-1.9
3,429,565	-		LRK54_RS15530	0.70	-0.9
3,429,565	-		LRK54_RS15530	0.70	-0.2
3,429,565	-		LRK54_RS15530	0.70	+0.0
3,429,565	-		LRK54_RS15530	0.70	+0.5
3,429,565	-		LRK54_RS15530	0.70	-0.4
3,429,666	+				+0.4
3,429,666	+				-0.3
3,429,666	+				-1.2
3,429,666	+				-0.9
3,429,666	+				-1.2
3,429,666	+				-0.5
3,429,666	+				+0.2
3,429,666	+				+0.0
3,429,666	+				+0.1
3,429,666	+				+1.9
3,429,666	+				-0.3
3,429,666	+				+0.2
3,429,666	+				-0.7
3,429,666	+				+0.6
3,429,666	+				+1.6
3,429,666	+				+1.0
3,429,666	+				-0.7
3,429,666	+				-1.0
3,429,666	+				-0.5
3,429,667	-				+0.8
3,429,667	-				-0.4
3,429,667	-				+0.1
3,429,667	-				-1.3
3,429,667	-				-0.6
3,429,667	-				+0.2
3,429,667	-				-0.4
3,429,667	-				-0.4
3,429,667	-				-0.7
3,429,667	-				-1.0
3,429,667	-				-0.3
3,429,667	-				-0.1
3,429,667	-				+1.2
3,429,667	-				+1.4
3,429,667	-				+0.0
3,429,667	-				+0.2
3,429,667	-				-0.0
3,429,667	-				-0.6
3,429,667	-				+0.3
3,429,667	-				+2.6
3,429,667	-				+0.3
3,429,724	+				-0.8