Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14785

Experiment: Time0_washed

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_washed
3,269,595	+				+3.2
3,269,596	-				-1.4
3,269,596	-				+1.0
3,269,643	+		LRK54_RS14780	0.14	-0.7
3,269,643	+		LRK54_RS14780	0.14	+0.1
3,269,643	+		LRK54_RS14780	0.14	-1.4
3,269,643	+		LRK54_RS14780	0.14	-1.2
3,269,643	+		LRK54_RS14780	0.14	-0.7
3,269,644	-		LRK54_RS14780	0.14	-0.4
3,269,644	-		LRK54_RS14780	0.14	+1.0
3,269,644	-		LRK54_RS14780	0.14	+0.6
3,269,644	-		LRK54_RS14780	0.14	+0.6
3,269,644	-		LRK54_RS14780	0.14	-2.0
3,269,644	-		LRK54_RS14780	0.14	+0.0
3,269,644	-		LRK54_RS14780	0.14	+0.4
3,269,644	-		LRK54_RS14780	0.14	-0.2
3,269,644	-		LRK54_RS14780	0.14	-1.5
3,269,679	+		LRK54_RS14780	0.18	+0.1
3,269,679	+		LRK54_RS14780	0.18	-0.1
3,269,679	+		LRK54_RS14780	0.18	+0.8
3,269,679	+		LRK54_RS14780	0.18	-0.6
3,269,679	+		LRK54_RS14780	0.18	-0.1
3,269,679	+		LRK54_RS14780	0.18	-0.6
3,269,679	+		LRK54_RS14780	0.18	+0.0
3,269,679	+		LRK54_RS14780	0.18	-0.4
3,269,679	+		LRK54_RS14780	0.18	-0.6
3,269,679	+		LRK54_RS14780	0.18	-2.3
3,269,680	-		LRK54_RS14780	0.18	-0.1
3,269,680	-		LRK54_RS14780	0.18	+0.6
3,269,680	-		LRK54_RS14780	0.18	+1.6
3,269,680	-		LRK54_RS14780	0.18	-0.3
3,269,680	-		LRK54_RS14780	0.18	-0.4
3,269,680	-		LRK54_RS14780	0.18	+0.2
3,269,680	-		LRK54_RS14780	0.18	-0.6
3,269,680	-		LRK54_RS14780	0.18	-1.0
3,269,680	-		LRK54_RS14780	0.18	+1.0
3,269,680	-		LRK54_RS14780	0.18	+0.6
3,269,680	-		LRK54_RS14780	0.18	-1.1
3,269,680	-		LRK54_RS14780	0.18	+0.7
3,269,680	-		LRK54_RS14780	0.18	+0.0
3,269,680	-		LRK54_RS14780	0.18	-0.8
3,269,907	+		LRK54_RS14780	0.43	+1.2
3,269,907	+		LRK54_RS14780	0.43	+1.3
3,269,908	-		LRK54_RS14780	0.43	-0.2
3,269,908	-		LRK54_RS14780	0.43	-0.4
3,269,908	-		LRK54_RS14780	0.43	-1.6
3,269,908	-		LRK54_RS14780	0.43	-0.3
3,269,908	-		LRK54_RS14780	0.43	-1.2
3,269,908	-		LRK54_RS14780	0.43	+0.9
3,269,968	-		LRK54_RS14780	0.49	-1.0
3,270,009	+		LRK54_RS14780	0.54	-0.6
3,270,009	+		LRK54_RS14780	0.54	-0.6
3,270,009	+		LRK54_RS14780	0.54	-2.4
3,270,009	+		LRK54_RS14780	0.54	-1.4
3,270,009	+		LRK54_RS14780	0.54	+1.6
3,270,009	+		LRK54_RS14780	0.54	-1.2
3,270,009	+		LRK54_RS14780	0.54	+2.6
3,270,009	+		LRK54_RS14780	0.54	+0.1
3,270,009	+		LRK54_RS14780	0.54	-0.5
3,270,009	+		LRK54_RS14780	0.54	+0.6
3,270,009	+		LRK54_RS14780	0.54	+1.9
3,270,009	+		LRK54_RS14780	0.54	+0.1
3,270,009	+		LRK54_RS14780	0.54	+0.4
3,270,009	+		LRK54_RS14780	0.54	-0.6
3,270,009	+		LRK54_RS14780	0.54	-0.6
3,270,009	+		LRK54_RS14780	0.54	+0.3
3,270,009	+		LRK54_RS14780	0.54	-0.2
3,270,010	-		LRK54_RS14780	0.54	+0.6
3,270,010	-		LRK54_RS14780	0.54	-1.3
3,270,010	-		LRK54_RS14780	0.54	-0.0
3,270,010	-		LRK54_RS14780	0.54	+1.9
3,270,010	-		LRK54_RS14780	0.54	-0.5
3,270,010	-		LRK54_RS14780	0.54	-0.9
3,270,010	-		LRK54_RS14780	0.54	-0.3
3,270,010	-		LRK54_RS14780	0.54	-1.4
3,270,010	-		LRK54_RS14780	0.54	-2.2
3,270,010	-		LRK54_RS14780	0.54	+2.0
3,270,010	-		LRK54_RS14780	0.54	+0.0
3,270,010	-		LRK54_RS14780	0.54	-0.4
3,270,010	-		LRK54_RS14780	0.54	-0.5
3,270,010	-		LRK54_RS14780	0.54	-0.3
3,270,010	-		LRK54_RS14780	0.54	+0.0
3,270,045	+		LRK54_RS14780	0.58	+1.6
3,270,045	+		LRK54_RS14780	0.58	+0.1
3,270,046	-		LRK54_RS14780	0.58	+4.2
3,270,046	-		LRK54_RS14780	0.58	-0.5
3,270,559	+				+0.7
3,270,559	+				+0.4
3,270,559	+				-2.1
3,270,559	+				-0.5
3,270,559	+				-0.4
3,270,559	+				+0.1
3,270,559	+				-0.2
3,270,560	-				+0.0
3,270,560	-				-0.6
3,270,560	-				+0.4
3,271,021	+		LRK54_RS14785	0.51	-1.2
3,271,021	+		LRK54_RS14785	0.51	-0.6
3,271,021	+		LRK54_RS14785	0.51	+0.6
3,271,021	+		LRK54_RS14785	0.51	-1.0
3,271,021	+		LRK54_RS14785	0.51	+1.0
3,271,021	+		LRK54_RS14785	0.51	-0.5
3,271,021	+		LRK54_RS14785	0.51	-0.6
3,271,021	+		LRK54_RS14785	0.51	-2.1
3,271,021	+		LRK54_RS14785	0.51	-0.2
3,271,022	-		LRK54_RS14785	0.51	+0.2
3,271,022	-		LRK54_RS14785	0.51	+1.2
3,271,022	-		LRK54_RS14785	0.51	-1.4
3,271,319	-		LRK54_RS14785	0.79	+0.6
3,271,319	-		LRK54_RS14785	0.79	-0.5
3,271,319	-		LRK54_RS14785	0.79	+0.8
3,271,319	-		LRK54_RS14785	0.79	-1.4
3,271,471	+				+0.3
3,271,471	+				-2.0
3,271,471	+				+0.3
3,271,471	+				-0.9
3,271,471	+				+1.0
3,271,471	+				-0.2
3,271,471	+				-1.6
3,271,471	+				-0.9
3,271,471	+				-1.4
3,271,471	+				+0.6
3,271,471	+				-0.2
3,271,471	+				+0.3
3,271,472	-				+2.0
3,271,472	-				+0.0
3,271,472	-				-0.6
3,271,472	-				+0.3
3,271,472	-				-1.1
3,271,528	+				+0.9
3,271,528	+				+1.3
3,271,529	-				-0.4
3,271,529	-				+0.7
3,271,543	+				-0.4
3,271,543	+				-1.4
3,271,543	+				+0.1
3,271,543	+				-0.6
3,271,543	+				+1.2
3,271,543	+				-0.9
3,271,544	-				+0.3
3,271,544	-				+0.8
3,271,544	-				-0.1
3,271,544	-				-1.2
3,271,544	-				-1.0
3,271,544	-				+0.2
3,271,544	-				+1.3
3,271,544	-				-1.6
3,271,593	+				-2.3
3,271,594	-				+0.7
3,271,594	-				-2.0
3,271,594	-				-0.6
3,271,681	+		LRK54_RS14790	0.13	-1.1
3,271,681	+		LRK54_RS14790	0.13	+0.6
3,271,681	+		LRK54_RS14790	0.13	-1.2
3,271,681	+		LRK54_RS14790	0.13	+0.6
3,271,681	+		LRK54_RS14790	0.13	+0.9
3,271,681	+		LRK54_RS14790	0.13	-0.9
3,271,681	+		LRK54_RS14790	0.13	-0.2
3,271,681	+		LRK54_RS14790	0.13	+1.0
3,271,681	+		LRK54_RS14790	0.13	+0.6
3,271,681	+		LRK54_RS14790	0.13	-0.3
3,271,681	+		LRK54_RS14790	0.13	-1.6
3,271,681	+		LRK54_RS14790	0.13	-0.4
3,271,681	+		LRK54_RS14790	0.13	+2.0
3,271,681	+		LRK54_RS14790	0.13	-1.9
3,271,681	+		LRK54_RS14790	0.13	-0.3
3,271,682	-		LRK54_RS14790	0.13	-0.4
3,271,682	-		LRK54_RS14790	0.13	+0.5
3,271,682	-		LRK54_RS14790	0.13	-0.1
3,271,682	-		LRK54_RS14790	0.13	+0.1
3,271,682	-		LRK54_RS14790	0.13	+0.9
3,271,682	-		LRK54_RS14790	0.13	+0.6
3,271,682	-		LRK54_RS14790	0.13	-0.6
3,272,053	+		LRK54_RS14790	0.56	-0.9
3,272,053	+		LRK54_RS14790	0.56	+0.1
3,272,053	+		LRK54_RS14790	0.56	-0.1
3,272,053	+		LRK54_RS14790	0.56	-0.7
3,272,053	+		LRK54_RS14790	0.56	+1.0
3,272,054	-		LRK54_RS14790	0.56	-0.0
3,272,054	-		LRK54_RS14790	0.56	-1.7
3,272,054	-		LRK54_RS14790	0.56	-0.5
3,272,054	-		LRK54_RS14790	0.56	-0.2
3,272,054	-		LRK54_RS14790	0.56	+1.1
3,272,531	+				+0.7
3,272,531	+				-0.7
3,272,531	+				-1.5
3,272,531	+				+1.6
3,272,532	-				+0.6
3,272,532	-				-0.2
3,272,532	-				-0.8