Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13155

Experiment: Time0_washed

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_washed
2,944,907	+				-0.0
2,944,907	+				-0.0
2,944,907	+				-1.4
2,944,908	-				-3.1
2,945,029	-		LRK54_RS13150	0.21	-0.3
2,945,103	-		LRK54_RS13150	0.28	+2.0
2,945,103	-		LRK54_RS13150	0.28	+0.6
2,945,103	-		LRK54_RS13150	0.28	-0.4
2,945,152	+		LRK54_RS13150	0.32	+0.2
2,945,152	+		LRK54_RS13150	0.32	+0.6
2,945,152	+		LRK54_RS13150	0.32	+0.6
2,945,152	+		LRK54_RS13150	0.32	+0.9
2,945,152	+		LRK54_RS13150	0.32	-1.2
2,945,152	+		LRK54_RS13150	0.32	+0.7
2,945,153	-		LRK54_RS13150	0.32	+2.9
2,945,153	-		LRK54_RS13150	0.32	-0.1
2,945,153	-		LRK54_RS13150	0.32	+1.0
2,945,153	-		LRK54_RS13150	0.32	-0.3
2,945,153	-		LRK54_RS13150	0.32	-0.2
2,945,283	+		LRK54_RS13150	0.45	-0.8
2,945,283	+		LRK54_RS13150	0.45	+0.4
2,945,283	+		LRK54_RS13150	0.45	+1.2
2,945,284	-		LRK54_RS13150	0.45	-0.2
2,945,284	-		LRK54_RS13150	0.45	-0.6
2,945,284	-		LRK54_RS13150	0.45	+0.1
2,945,284	-		LRK54_RS13150	0.45	+1.6
2,945,284	-		LRK54_RS13150	0.45	+0.0
2,945,405	+		LRK54_RS13150	0.56	-0.4
2,945,405	+		LRK54_RS13150	0.56	-1.4
2,945,405	+		LRK54_RS13150	0.56	-0.0
2,945,405	+		LRK54_RS13150	0.56	+0.5
2,945,405	+		LRK54_RS13150	0.56	-0.8
2,945,406	-		LRK54_RS13150	0.56	-0.9
2,945,406	-		LRK54_RS13150	0.56	+2.2
2,945,406	-		LRK54_RS13150	0.56	+0.3
2,945,406	-		LRK54_RS13150	0.56	+0.1
2,945,406	-		LRK54_RS13150	0.56	-0.4
2,945,406	-		LRK54_RS13150	0.56	-0.5
2,945,406	-		LRK54_RS13150	0.56	-0.4
2,945,425	+		LRK54_RS13150	0.58	+0.3
2,945,426	-		LRK54_RS13150	0.58	+0.0
2,945,426	-		LRK54_RS13150	0.58	-0.4
2,945,481	-		LRK54_RS13150	0.63	+1.3
2,945,546	+		LRK54_RS13150	0.69	-1.4
2,945,643	+		LRK54_RS13150	0.78	-0.2
2,945,843	+				+1.6
2,945,932	+				+0.4
2,945,932	+				+0.2
2,945,932	+				-0.8
2,945,933	-				-0.9
2,945,933	-				+1.3
2,945,963	+		LRK54_RS13155	0.10	-0.2
2,945,963	+		LRK54_RS13155	0.10	-1.8
2,945,964	-		LRK54_RS13155	0.10	-1.4
2,946,131	+		LRK54_RS13155	0.29	-3.3
2,946,131	+		LRK54_RS13155	0.29	-1.0
2,946,131	+		LRK54_RS13155	0.29	-0.0
2,946,131	+		LRK54_RS13155	0.29	+1.6
2,946,132	-		LRK54_RS13155	0.29	-0.4
2,946,132	-		LRK54_RS13155	0.29	-0.8
2,946,204	+		LRK54_RS13155	0.37	-3.0
2,946,204	+		LRK54_RS13155	0.37	-1.1
2,946,205	-		LRK54_RS13155	0.37	-0.8
2,946,266	-		LRK54_RS13155	0.44	-1.0
2,946,325	+		LRK54_RS13155	0.50	+3.6
2,946,326	-		LRK54_RS13155	0.50	-0.0
2,946,362	-		LRK54_RS13155	0.54	-1.6
2,946,362	-		LRK54_RS13155	0.54	-0.9
2,946,559	+		LRK54_RS13155	0.76	-0.9
2,946,559	+		LRK54_RS13155	0.76	+1.1
2,946,559	+		LRK54_RS13155	0.76	+0.4
2,946,559	+		LRK54_RS13155	0.76	-0.3
2,946,559	+		LRK54_RS13155	0.76	+1.6
2,946,559	+		LRK54_RS13155	0.76	+0.8
2,946,560	-		LRK54_RS13155	0.76	+0.2
2,946,560	-		LRK54_RS13155	0.76	-1.2
2,946,560	-		LRK54_RS13155	0.76	-0.8
2,946,560	-		LRK54_RS13155	0.76	-1.1
2,946,560	-		LRK54_RS13155	0.76	-0.2
2,946,634	+		LRK54_RS13155	0.84	+1.6
2,946,634	+		LRK54_RS13155	0.84	-0.4
2,946,634	+		LRK54_RS13155	0.84	-0.8
2,946,634	+		LRK54_RS13155	0.84	-0.9
2,946,635	-		LRK54_RS13155	0.84	-1.8
2,946,635	-		LRK54_RS13155	0.84	-1.4
2,946,635	-		LRK54_RS13155	0.84	-1.2
2,946,710	+				+0.5
2,946,769	+				-2.0
2,946,769	+				-1.0
2,946,770	-				-0.2
2,946,770	-				+1.0
2,946,770	-				-1.4
2,946,968	+		LRK54_RS13160	0.16	-0.3
2,946,968	+		LRK54_RS13160	0.16	+1.8
2,946,968	+		LRK54_RS13160	0.16	+0.2
2,946,968	+		LRK54_RS13160	0.16	+0.6
2,946,968	+		LRK54_RS13160	0.16	+2.1
2,946,968	+		LRK54_RS13160	0.16	-0.6
2,946,969	-		LRK54_RS13160	0.16	+1.7
2,946,969	-		LRK54_RS13160	0.16	+0.2
2,946,969	-		LRK54_RS13160	0.16	+0.3
2,946,969	-		LRK54_RS13160	0.16	-1.1
2,946,969	-		LRK54_RS13160	0.16	-0.6
2,946,969	-		LRK54_RS13160	0.16	+0.8
2,946,974	+		LRK54_RS13160	0.17	-0.4
2,946,974	+		LRK54_RS13160	0.17	+0.4
2,946,975	-		LRK54_RS13160	0.17	-0.4
2,946,975	-		LRK54_RS13160	0.17	+1.3
2,947,073	+		LRK54_RS13160	0.26	-0.7
2,947,073	+		LRK54_RS13160	0.26	-0.4
2,947,158	+		LRK54_RS13160	0.34	-0.6
2,947,161	-		LRK54_RS13160	0.35	+1.2
2,947,217	+		LRK54_RS13160	0.40	-0.9
2,947,217	+		LRK54_RS13160	0.40	-1.5
2,947,217	+		LRK54_RS13160	0.40	-0.8
2,947,217	+		LRK54_RS13160	0.40	-1.0
2,947,217	+		LRK54_RS13160	0.40	-0.3
2,947,217	+		LRK54_RS13160	0.40	-1.9
2,947,217	+		LRK54_RS13160	0.40	-0.8
2,947,217	+		LRK54_RS13160	0.40	-0.8
2,947,217	+		LRK54_RS13160	0.40	-0.0
2,947,218	-		LRK54_RS13160	0.40	+0.6
2,947,218	-		LRK54_RS13160	0.40	-0.0
2,947,218	-		LRK54_RS13160	0.40	-0.6
2,947,218	-		LRK54_RS13160	0.40	-0.6
2,947,218	-		LRK54_RS13160	0.40	+0.4
2,947,218	-		LRK54_RS13160	0.40	-2.0
2,947,218	-		LRK54_RS13160	0.40	+0.6
2,947,218	-		LRK54_RS13160	0.40	+0.6
2,947,364	+		LRK54_RS13160	0.54	+0.8
2,947,365	-		LRK54_RS13160	0.54	-0.8
2,947,412	+		LRK54_RS13160	0.58	-0.5
2,947,412	+		LRK54_RS13160	0.58	+0.4
2,947,412	+		LRK54_RS13160	0.58	+0.6
2,947,412	+		LRK54_RS13160	0.58	+1.6
2,947,412	+		LRK54_RS13160	0.58	-0.1
2,947,412	+		LRK54_RS13160	0.58	-0.5
2,947,412	+		LRK54_RS13160	0.58	-0.1
2,947,412	+		LRK54_RS13160	0.58	-1.0
2,947,413	-		LRK54_RS13160	0.58	+1.4
2,947,413	-		LRK54_RS13160	0.58	-0.2
2,947,413	-		LRK54_RS13160	0.58	-0.7
2,947,413	-		LRK54_RS13160	0.58	-0.4
2,947,415	+		LRK54_RS13160	0.58	-0.3
2,947,416	-		LRK54_RS13160	0.59	-1.9
2,947,416	-		LRK54_RS13160	0.59	+0.9
2,947,416	-		LRK54_RS13160	0.59	-0.2
2,947,416	-		LRK54_RS13160	0.59	-1.1
2,947,505	+		LRK54_RS13160	0.67	-0.9
2,947,505	+		LRK54_RS13160	0.67	-0.2
2,947,505	+		LRK54_RS13160	0.67	+0.2
2,947,505	+		LRK54_RS13160	0.67	-0.9
2,947,505	+		LRK54_RS13160	0.67	-0.2
2,947,505	+		LRK54_RS13160	0.67	-1.0
2,947,506	-		LRK54_RS13160	0.67	-1.3
2,947,529	+		LRK54_RS13160	0.69	-0.3
2,947,529	+		LRK54_RS13160	0.69	-1.4
2,947,529	+		LRK54_RS13160	0.69	-1.0
2,947,529	+		LRK54_RS13160	0.69	-1.7
2,947,530	-		LRK54_RS13160	0.69	+0.5
2,947,530	-		LRK54_RS13160	0.69	-0.2
2,947,532	+		LRK54_RS13160	0.69	-0.3
2,947,532	+		LRK54_RS13160	0.69	+2.6
2,947,533	-		LRK54_RS13160	0.70	-0.4
2,947,583	+		LRK54_RS13160	0.74	-0.0
2,947,583	+		LRK54_RS13160	0.74	-0.3
2,947,583	+		LRK54_RS13160	0.74	-0.0
2,947,583	+		LRK54_RS13160	0.74	+0.8
2,947,583	+		LRK54_RS13160	0.74	-0.3
2,947,583	+		LRK54_RS13160	0.74	+1.6
2,947,583	+		LRK54_RS13160	0.74	-1.0
2,947,583	+		LRK54_RS13160	0.74	-1.0
2,947,583	+		LRK54_RS13160	0.74	+0.4
2,947,584	-		LRK54_RS13160	0.74	+0.7
2,947,584	-		LRK54_RS13160	0.74	+0.1
2,947,584	-		LRK54_RS13160	0.74	-1.3
2,947,584	-		LRK54_RS13160	0.74	-0.0
2,947,584	-		LRK54_RS13160	0.74	-0.8
2,947,584	-		LRK54_RS13160	0.74	-0.1
2,947,584	-		LRK54_RS13160	0.74	+0.3
2,947,584	-		LRK54_RS13160	0.74	+1.1
2,947,634	+		LRK54_RS13160	0.79	-0.8
2,947,634	+		LRK54_RS13160	0.79	+0.8
2,947,635	-		LRK54_RS13160	0.79	+0.6
2,947,664	+		LRK54_RS13160	0.82	+0.6
2,947,664	+		LRK54_RS13160	0.82	-1.2
2,947,664	+		LRK54_RS13160	0.82	-0.4
2,947,664	+		LRK54_RS13160	0.82	+1.6
2,947,664	+		LRK54_RS13160	0.82	+0.3
2,947,664	+		LRK54_RS13160	0.82	-0.2
2,947,665	-		LRK54_RS13160	0.82	-1.2
2,947,665	-		LRK54_RS13160	0.82	+1.6
2,947,709	+		LRK54_RS13160	0.86	-1.2
2,947,710	-		LRK54_RS13160	0.86	+1.2
2,947,710	-		LRK54_RS13160	0.86	-0.6
2,947,710	-		LRK54_RS13160	0.86	-2.2
2,947,715	+		LRK54_RS13160	0.87	+1.4
2,947,715	+		LRK54_RS13160	0.87	+0.6
2,947,715	+		LRK54_RS13160	0.87	-2.1
2,947,715	+		LRK54_RS13160	0.87	+1.0
2,947,715	+		LRK54_RS13160	0.87	-0.8
2,947,715	+		LRK54_RS13160	0.87	+0.6
2,947,715	+		LRK54_RS13160	0.87	-2.1
2,947,716	-		LRK54_RS13160	0.87	+0.6
2,947,716	-		LRK54_RS13160	0.87	-0.2
2,947,716	-		LRK54_RS13160	0.87	-0.6
2,947,716	-		LRK54_RS13160	0.87	+1.3
2,947,716	-		LRK54_RS13160	0.87	+0.1
2,947,718	+		LRK54_RS13160	0.87	-0.8
2,947,718	+		LRK54_RS13160	0.87	+0.6
2,947,718	+		LRK54_RS13160	0.87	+0.3
2,947,718	+		LRK54_RS13160	0.87	-1.2
2,947,718	+		LRK54_RS13160	0.87	-0.4
2,947,718	+		LRK54_RS13160	0.87	+0.2
2,947,719	-		LRK54_RS13160	0.87	-0.8
2,947,719	-		LRK54_RS13160	0.87	-1.0
2,947,747	+		LRK54_RS13160	0.90	-1.1
2,947,748	-		LRK54_RS13160	0.90	-1.0
2,947,769	+				-0.8
2,947,769	+				+1.0
2,947,769	+				+0.4
2,947,769	+				+1.2
2,947,769	+				+3.1
2,947,769	+				+1.1
2,947,770	-				-1.6
2,947,770	-				+0.6
2,947,770	-				-0.2
2,947,770	-				-0.3
2,947,770	-				-0.0
2,947,770	-				-0.2
2,947,770	-				+2.6