Experiment: Time0_washed
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS08020 and LRK54_RS08025 are separated by 225 nucleotides LRK54_RS08025 and LRK54_RS08030 are separated by 53 nucleotides LRK54_RS08030 and LRK54_RS08035 are separated by 51 nucleotides
LRK54_RS08020: LRK54_RS08020 - aldehyde dehydrogenase family protein, at 1,756,553 to 1,758,028
_RS08020
LRK54_RS08025: LRK54_RS08025 - NAD(P)-dependent oxidoreductase, at 1,758,254 to 1,758,865
_RS08025
LRK54_RS08030: LRK54_RS08030 - DNA starvation/stationary phase protection protein, at 1,758,919 to 1,759,467
_RS08030
LRK54_RS08035: LRK54_RS08035 - NAD(P)H-dependent oxidoreductase, at 1,759,519 to 1,760,091
_RS08035
Position (kb) 1758
1759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1757.670 kb on + strand, within LRK54_RS08020 at 1757.670 kb on + strand, within LRK54_RS08020 at 1757.670 kb on + strand, within LRK54_RS08020 at 1757.670 kb on + strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.671 kb on - strand, within LRK54_RS08020 at 1757.790 kb on - strand, within LRK54_RS08020 at 1758.017 kb on + strand at 1758.018 kb on - strand at 1758.018 kb on - strand at 1758.026 kb on + strand at 1758.027 kb on - strand at 1758.027 kb on - strand at 1758.027 kb on - strand at 1758.133 kb on + strand at 1758.133 kb on + strand at 1758.133 kb on + strand at 1758.133 kb on + strand at 1758.134 kb on - strand at 1758.134 kb on - strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.223 kb on + strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.224 kb on - strand at 1758.608 kb on + strand, within LRK54_RS08025 at 1758.608 kb on + strand, within LRK54_RS08025 at 1758.608 kb on + strand, within LRK54_RS08025 at 1758.609 kb on - strand, within LRK54_RS08025 at 1758.609 kb on - strand, within LRK54_RS08025 at 1758.861 kb on - strand at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.063 kb on + strand, within LRK54_RS08030 at 1759.064 kb on - strand, within LRK54_RS08030 at 1759.064 kb on - strand, within LRK54_RS08030 at 1759.064 kb on - strand, within LRK54_RS08030 at 1759.064 kb on - strand, within LRK54_RS08030 at 1759.064 kb on - strand, within LRK54_RS08030 at 1759.117 kb on + strand, within LRK54_RS08030 at 1759.117 kb on + strand, within LRK54_RS08030 at 1759.117 kb on + strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.118 kb on - strand, within LRK54_RS08030 at 1759.264 kb on + strand, within LRK54_RS08030 at 1759.264 kb on + strand, within LRK54_RS08030 at 1759.265 kb on - strand, within LRK54_RS08030 at 1759.265 kb on - strand, within LRK54_RS08030 at 1759.265 kb on - strand, within LRK54_RS08030 at 1759.265 kb on - strand, within LRK54_RS08030 at 1759.265 kb on - strand, within LRK54_RS08030 at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.528 kb on + strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.529 kb on - strand at 1759.540 kb on + strand at 1759.541 kb on - strand at 1759.541 kb on - strand at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.657 kb on + strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.658 kb on - strand, within LRK54_RS08035 at 1759.663 kb on + strand, within LRK54_RS08035 at 1759.663 kb on + strand, within LRK54_RS08035 at 1759.663 kb on + strand, within LRK54_RS08035 at 1759.663 kb on + strand, within LRK54_RS08035 at 1759.663 kb on + strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.664 kb on - strand, within LRK54_RS08035 at 1759.669 kb on + strand, within LRK54_RS08035 at 1759.669 kb on + strand, within LRK54_RS08035 at 1759.669 kb on + strand, within LRK54_RS08035 at 1759.670 kb on - strand, within LRK54_RS08035 at 1759.670 kb on - strand, within LRK54_RS08035 at 1759.670 kb on - strand, within LRK54_RS08035 at 1759.670 kb on - strand, within LRK54_RS08035 at 1759.682 kb on - strand, within LRK54_RS08035 at 1759.753 kb on + strand, within LRK54_RS08035 at 1759.753 kb on + strand, within LRK54_RS08035 at 1759.753 kb on + strand, within LRK54_RS08035 at 1759.754 kb on - strand, within LRK54_RS08035 at 1759.754 kb on - strand, within LRK54_RS08035 at 1759.754 kb on - strand, within LRK54_RS08035 at 1759.754 kb on - strand, within LRK54_RS08035 at 1759.754 kb on - strand, within LRK54_RS08035
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_washed remove 1,757,670 + LRK54_RS08020 0.76 -0.7 1,757,670 + LRK54_RS08020 0.76 +0.1 1,757,670 + LRK54_RS08020 0.76 -2.7 1,757,670 + LRK54_RS08020 0.76 +1.6 1,757,671 - LRK54_RS08020 0.76 +0.0 1,757,671 - LRK54_RS08020 0.76 +0.3 1,757,671 - LRK54_RS08020 0.76 +0.0 1,757,671 - LRK54_RS08020 0.76 -0.6 1,757,671 - LRK54_RS08020 0.76 +0.0 1,757,671 - LRK54_RS08020 0.76 +0.4 1,757,671 - LRK54_RS08020 0.76 -0.7 1,757,790 - LRK54_RS08020 0.84 +0.0 1,758,017 + +1.8 1,758,018 - +0.0 1,758,018 - +0.5 1,758,026 + +0.2 1,758,027 - -0.5 1,758,027 - -0.9 1,758,027 - +1.1 1,758,133 + +1.6 1,758,133 + -1.4 1,758,133 + +0.3 1,758,133 + -0.4 1,758,134 - -0.4 1,758,134 - -2.6 1,758,223 + -1.4 1,758,223 + -0.8 1,758,223 + +0.6 1,758,223 + +0.1 1,758,223 + -1.0 1,758,223 + -2.0 1,758,223 + -1.0 1,758,223 + -0.1 1,758,223 + +0.7 1,758,223 + -0.4 1,758,223 + +0.8 1,758,223 + -0.2 1,758,223 + +0.6 1,758,223 + +0.4 1,758,223 + +0.0 1,758,223 + -1.3 1,758,223 + -1.0 1,758,224 - -0.7 1,758,224 - +1.1 1,758,224 - +0.0 1,758,224 - +0.9 1,758,224 - +0.2 1,758,224 - +1.6 1,758,224 - -1.2 1,758,224 - -0.7 1,758,224 - +0.2 1,758,224 - -0.0 1,758,608 + LRK54_RS08025 0.58 +2.2 1,758,608 + LRK54_RS08025 0.58 +0.6 1,758,608 + LRK54_RS08025 0.58 -1.5 1,758,609 - LRK54_RS08025 0.58 -1.0 1,758,609 - LRK54_RS08025 0.58 -0.9 1,758,861 - +0.6 1,759,063 + LRK54_RS08030 0.26 -1.3 1,759,063 + LRK54_RS08030 0.26 -0.2 1,759,063 + LRK54_RS08030 0.26 -0.2 1,759,063 + LRK54_RS08030 0.26 +0.6 1,759,063 + LRK54_RS08030 0.26 -0.9 1,759,063 + LRK54_RS08030 0.26 -2.4 1,759,063 + LRK54_RS08030 0.26 +1.6 1,759,064 - LRK54_RS08030 0.26 +0.4 1,759,064 - LRK54_RS08030 0.26 -1.2 1,759,064 - LRK54_RS08030 0.26 +0.2 1,759,064 - LRK54_RS08030 0.26 -0.2 1,759,064 - LRK54_RS08030 0.26 -0.3 1,759,117 + LRK54_RS08030 0.36 +0.3 1,759,117 + LRK54_RS08030 0.36 -1.4 1,759,117 + LRK54_RS08030 0.36 +0.0 1,759,118 - LRK54_RS08030 0.36 -0.2 1,759,118 - LRK54_RS08030 0.36 -2.3 1,759,118 - LRK54_RS08030 0.36 -1.7 1,759,118 - LRK54_RS08030 0.36 +0.5 1,759,118 - LRK54_RS08030 0.36 +0.6 1,759,118 - LRK54_RS08030 0.36 -2.3 1,759,118 - LRK54_RS08030 0.36 -1.0 1,759,264 + LRK54_RS08030 0.63 +2.6 1,759,264 + LRK54_RS08030 0.63 +0.0 1,759,265 - LRK54_RS08030 0.63 -0.0 1,759,265 - LRK54_RS08030 0.63 +0.2 1,759,265 - LRK54_RS08030 0.63 +0.6 1,759,265 - LRK54_RS08030 0.63 +1.2 1,759,265 - LRK54_RS08030 0.63 +1.6 1,759,528 + -0.6 1,759,528 + +0.9 1,759,528 + -0.3 1,759,528 + -1.0 1,759,528 + -0.8 1,759,528 + -1.2 1,759,528 + -0.7 1,759,528 + +3.6 1,759,528 + -0.3 1,759,528 + -1.4 1,759,528 + -0.4 1,759,528 + +0.4 1,759,528 + +0.1 1,759,528 + +1.6 1,759,528 + +0.4 1,759,528 + -0.8 1,759,528 + -1.0 1,759,529 - +1.2 1,759,529 - +0.1 1,759,529 - -3.1 1,759,529 - +0.0 1,759,529 - +1.0 1,759,529 - -0.3 1,759,529 - +0.0 1,759,529 - -0.4 1,759,529 - -1.5 1,759,529 - -0.1 1,759,540 + -0.8 1,759,541 - +1.0 1,759,541 - +0.6 1,759,657 + LRK54_RS08035 0.24 +0.2 1,759,657 + LRK54_RS08035 0.24 +0.3 1,759,657 + LRK54_RS08035 0.24 +0.3 1,759,657 + LRK54_RS08035 0.24 +0.2 1,759,657 + LRK54_RS08035 0.24 -0.7 1,759,657 + LRK54_RS08035 0.24 -0.6 1,759,657 + LRK54_RS08035 0.24 +0.5 1,759,658 - LRK54_RS08035 0.24 +0.0 1,759,658 - LRK54_RS08035 0.24 +0.8 1,759,658 - LRK54_RS08035 0.24 +1.1 1,759,658 - LRK54_RS08035 0.24 +0.5 1,759,658 - LRK54_RS08035 0.24 -0.9 1,759,658 - LRK54_RS08035 0.24 -0.4 1,759,658 - LRK54_RS08035 0.24 +0.2 1,759,658 - LRK54_RS08035 0.24 -0.2 1,759,663 + LRK54_RS08035 0.25 +0.4 1,759,663 + LRK54_RS08035 0.25 +0.3 1,759,663 + LRK54_RS08035 0.25 +0.1 1,759,663 + LRK54_RS08035 0.25 -0.6 1,759,663 + LRK54_RS08035 0.25 -0.4 1,759,664 - LRK54_RS08035 0.25 +0.1 1,759,664 - LRK54_RS08035 0.25 -0.1 1,759,664 - LRK54_RS08035 0.25 +0.6 1,759,664 - LRK54_RS08035 0.25 +1.6 1,759,664 - LRK54_RS08035 0.25 -0.1 1,759,664 - LRK54_RS08035 0.25 -0.5 1,759,664 - LRK54_RS08035 0.25 +0.3 1,759,669 + LRK54_RS08035 0.26 -2.1 1,759,669 + LRK54_RS08035 0.26 -0.5 1,759,669 + LRK54_RS08035 0.26 -0.5 1,759,670 - LRK54_RS08035 0.26 -0.6 1,759,670 - LRK54_RS08035 0.26 +0.1 1,759,670 - LRK54_RS08035 0.26 -0.3 1,759,670 - LRK54_RS08035 0.26 -0.2 1,759,682 - LRK54_RS08035 0.28 +1.0 1,759,753 + LRK54_RS08035 0.41 -0.1 1,759,753 + LRK54_RS08035 0.41 +0.1 1,759,753 + LRK54_RS08035 0.41 +0.9 1,759,754 - LRK54_RS08035 0.41 -0.5 1,759,754 - LRK54_RS08035 0.41 +0.2 1,759,754 - LRK54_RS08035 0.41 -0.2 1,759,754 - LRK54_RS08035 0.41 -0.5 1,759,754 - LRK54_RS08035 0.41 +0.6
Or see this region's nucleotide sequence