Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05275

Experiment: Time0_washed

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05265 and LRK54_RS05270 are separated by 137 nucleotidesLRK54_RS05270 and LRK54_RS05275 are separated by 12 nucleotidesLRK54_RS05275 and LRK54_RS05280 are separated by 85 nucleotides LRK54_RS05265: LRK54_RS05265 - site-specific DNA-methyltransferase, at 1,128,076 to 1,130,025 _RS05265 LRK54_RS05270: LRK54_RS05270 - HigA family addiction module antitoxin, at 1,130,163 to 1,130,468 _RS05270 LRK54_RS05275: LRK54_RS05275 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,130,481 to 1,130,762 _RS05275 LRK54_RS05280: LRK54_RS05280 - DEAD/DEAH box helicase family protein, at 1,130,848 to 1,133,787 _RS05280 Position (kb) 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1129.636 kb on + strand, within LRK54_RS05265at 1129.636 kb on + strand, within LRK54_RS05265at 1129.636 kb on + strand, within LRK54_RS05265at 1129.636 kb on + strand, within LRK54_RS05265at 1129.637 kb on - strand, within LRK54_RS05265at 1129.637 kb on - strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.708 kb on + strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.709 kb on - strand, within LRK54_RS05265at 1129.773 kb on - strand, within LRK54_RS05265at 1129.804 kb on + strand, within LRK54_RS05265at 1129.805 kb on - strand, within LRK54_RS05265at 1129.805 kb on - strand, within LRK54_RS05265at 1129.805 kb on - strand, within LRK54_RS05265at 1129.825 kb on + strand, within LRK54_RS05265at 1129.826 kb on - strand, within LRK54_RS05265at 1129.862 kb on - strandat 1130.488 kb on + strandat 1130.489 kb on - strandat 1130.489 kb on - strandat 1130.489 kb on - strandat 1130.489 kb on - strandat 1130.565 kb on - strand, within LRK54_RS05275at 1130.656 kb on + strand, within LRK54_RS05275at 1130.657 kb on - strand, within LRK54_RS05275at 1130.657 kb on - strand, within LRK54_RS05275at 1130.758 kb on - strandat 1130.790 kb on - strandat 1130.944 kb on + strandat 1130.945 kb on - strandat 1130.945 kb on - strandat 1131.106 kb on + strandat 1131.107 kb on - strandat 1131.107 kb on - strandat 1131.187 kb on + strand, within LRK54_RS05280at 1131.187 kb on + strand, within LRK54_RS05280at 1131.188 kb on - strand, within LRK54_RS05280at 1131.188 kb on - strand, within LRK54_RS05280at 1131.188 kb on - strand, within LRK54_RS05280at 1131.343 kb on + strand, within LRK54_RS05280at 1131.343 kb on + strand, within LRK54_RS05280at 1131.343 kb on + strand, within LRK54_RS05280at 1131.343 kb on + strand, within LRK54_RS05280at 1131.344 kb on - strand, within LRK54_RS05280at 1131.344 kb on - strand, within LRK54_RS05280at 1131.344 kb on - strand, within LRK54_RS05280at 1131.424 kb on + strand, within LRK54_RS05280at 1131.425 kb on - strand, within LRK54_RS05280at 1131.425 kb on - strand, within LRK54_RS05280at 1131.425 kb on - strand, within LRK54_RS05280at 1131.425 kb on - strand, within LRK54_RS05280at 1131.425 kb on - strand, within LRK54_RS05280at 1131.425 kb on - strand, within LRK54_RS05280at 1131.647 kb on - strand, within LRK54_RS05280at 1131.647 kb on - strand, within LRK54_RS05280at 1131.736 kb on + strand, within LRK54_RS05280at 1131.736 kb on + strand, within LRK54_RS05280at 1131.736 kb on + strand, within LRK54_RS05280at 1131.737 kb on - strand, within LRK54_RS05280at 1131.737 kb on - strand, within LRK54_RS05280at 1131.737 kb on - strand, within LRK54_RS05280at 1131.737 kb on - strand, within LRK54_RS05280

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_washed
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1,129,636 + LRK54_RS05265 0.80 -0.8
1,129,636 + LRK54_RS05265 0.80 -0.3
1,129,636 + LRK54_RS05265 0.80 -0.6
1,129,636 + LRK54_RS05265 0.80 -1.2
1,129,637 - LRK54_RS05265 0.80 -1.0
1,129,637 - LRK54_RS05265 0.80 -1.0
1,129,708 + LRK54_RS05265 0.84 +0.2
1,129,708 + LRK54_RS05265 0.84 -0.6
1,129,708 + LRK54_RS05265 0.84 +1.1
1,129,708 + LRK54_RS05265 0.84 -0.9
1,129,708 + LRK54_RS05265 0.84 -0.4
1,129,708 + LRK54_RS05265 0.84 +0.3
1,129,708 + LRK54_RS05265 0.84 +0.6
1,129,708 + LRK54_RS05265 0.84 +1.4
1,129,708 + LRK54_RS05265 0.84 +0.6
1,129,708 + LRK54_RS05265 0.84 -0.2
1,129,708 + LRK54_RS05265 0.84 +0.4
1,129,708 + LRK54_RS05265 0.84 -0.2
1,129,708 + LRK54_RS05265 0.84 +1.0
1,129,708 + LRK54_RS05265 0.84 -0.4
1,129,708 + LRK54_RS05265 0.84 -1.0
1,129,708 + LRK54_RS05265 0.84 +0.4
1,129,708 + LRK54_RS05265 0.84 +2.0
1,129,708 + LRK54_RS05265 0.84 +0.6
1,129,709 - LRK54_RS05265 0.84 +0.6
1,129,709 - LRK54_RS05265 0.84 -0.6
1,129,709 - LRK54_RS05265 0.84 -0.4
1,129,709 - LRK54_RS05265 0.84 +1.6
1,129,709 - LRK54_RS05265 0.84 +1.3
1,129,709 - LRK54_RS05265 0.84 +0.7
1,129,709 - LRK54_RS05265 0.84 +1.0
1,129,709 - LRK54_RS05265 0.84 -0.7
1,129,709 - LRK54_RS05265 0.84 -0.3
1,129,709 - LRK54_RS05265 0.84 +2.0
1,129,709 - LRK54_RS05265 0.84 -1.0
1,129,709 - LRK54_RS05265 0.84 -0.9
1,129,709 - LRK54_RS05265 0.84 +0.0
1,129,773 - LRK54_RS05265 0.87 +0.4
1,129,804 + LRK54_RS05265 0.89 +0.6
1,129,805 - LRK54_RS05265 0.89 +0.3
1,129,805 - LRK54_RS05265 0.89 -0.1
1,129,805 - LRK54_RS05265 0.89 +0.8
1,129,825 + LRK54_RS05265 0.90 +0.4
1,129,826 - LRK54_RS05265 0.90 -1.4
1,129,862 - -1.3
1,130,488 + +1.5
1,130,489 - +0.3
1,130,489 - +0.4
1,130,489 - -0.2
1,130,489 - +0.4
1,130,565 - LRK54_RS05275 0.30 -0.7
1,130,656 + LRK54_RS05275 0.62 -0.9
1,130,657 - LRK54_RS05275 0.62 +0.1
1,130,657 - LRK54_RS05275 0.62 -0.7
1,130,758 - -0.5
1,130,790 - +0.1
1,130,944 + +0.0
1,130,945 - -0.1
1,130,945 - -0.4
1,131,106 + -0.3
1,131,107 - -1.0
1,131,107 - -0.5
1,131,187 + LRK54_RS05280 0.12 -1.0
1,131,187 + LRK54_RS05280 0.12 -1.4
1,131,188 - LRK54_RS05280 0.12 -1.8
1,131,188 - LRK54_RS05280 0.12 +0.5
1,131,188 - LRK54_RS05280 0.12 +0.9
1,131,343 + LRK54_RS05280 0.17 +1.9
1,131,343 + LRK54_RS05280 0.17 -0.4
1,131,343 + LRK54_RS05280 0.17 +1.5
1,131,343 + LRK54_RS05280 0.17 +1.5
1,131,344 - LRK54_RS05280 0.17 -1.4
1,131,344 - LRK54_RS05280 0.17 +1.5
1,131,344 - LRK54_RS05280 0.17 -0.3
1,131,424 + LRK54_RS05280 0.20 -0.2
1,131,425 - LRK54_RS05280 0.20 -0.1
1,131,425 - LRK54_RS05280 0.20 +0.6
1,131,425 - LRK54_RS05280 0.20 -0.3
1,131,425 - LRK54_RS05280 0.20 +0.3
1,131,425 - LRK54_RS05280 0.20 -1.8
1,131,425 - LRK54_RS05280 0.20 -0.5
1,131,647 - LRK54_RS05280 0.27 +0.6
1,131,647 - LRK54_RS05280 0.27 -0.6
1,131,736 + LRK54_RS05280 0.30 +0.1
1,131,736 + LRK54_RS05280 0.30 -0.6
1,131,736 + LRK54_RS05280 0.30 +0.7
1,131,737 - LRK54_RS05280 0.30 -0.4
1,131,737 - LRK54_RS05280 0.30 +0.0
1,131,737 - LRK54_RS05280 0.30 -0.1
1,131,737 - LRK54_RS05280 0.30 +1.6

Or see this region's nucleotide sequence