Experiment: Time0_washed
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02015 and LRK54_RS02020 are separated by 53 nucleotides LRK54_RS02020 and LRK54_RS02025 are separated by 4 nucleotides LRK54_RS02025 and LRK54_RS02030 overlap by 4 nucleotides
LRK54_RS02015: LRK54_RS02015 - cation diffusion facilitator family transporter, at 424,608 to 425,510
_RS02015
LRK54_RS02020: LRK54_RS02020 - DUF2058 domain-containing protein, at 425,564 to 426,103
_RS02020
LRK54_RS02025: LRK54_RS02025 - VOC family protein, at 426,108 to 426,500
_RS02025
LRK54_RS02030: LRK54_RS02030 - MmcQ/YjbR family DNA-binding protein, at 426,497 to 426,895
_RS02030
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.575 kb on + strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.576 kb on - strand at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.842 kb on + strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.843 kb on - strand, within LRK54_RS02015 at 424.867 kb on + strand, within LRK54_RS02015 at 424.868 kb on - strand, within LRK54_RS02015 at 424.868 kb on - strand, within LRK54_RS02015 at 424.868 kb on - strand, within LRK54_RS02015 at 424.902 kb on + strand, within LRK54_RS02015 at 424.902 kb on + strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 424.903 kb on - strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.023 kb on + strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.024 kb on - strand, within LRK54_RS02015 at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.523 kb on + strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.524 kb on - strand at 425.948 kb on + strand, within LRK54_RS02020 at 425.948 kb on + strand, within LRK54_RS02020 at 425.948 kb on + strand, within LRK54_RS02020 at 425.949 kb on - strand, within LRK54_RS02020 at 425.949 kb on - strand, within LRK54_RS02020 at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.062 kb on + strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.063 kb on - strand at 426.065 kb on + strand at 426.066 kb on - strand at 426.145 kb on + strand at 426.145 kb on + strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.146 kb on - strand at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.175 kb on + strand, within LRK54_RS02025 at 426.176 kb on - strand, within LRK54_RS02025 at 426.176 kb on - strand, within LRK54_RS02025 at 426.317 kb on + strand, within LRK54_RS02025 at 426.318 kb on - strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.436 kb on + strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.437 kb on - strand, within LRK54_RS02025 at 426.457 kb on + strand, within LRK54_RS02025 at 426.457 kb on + strand, within LRK54_RS02025 at 426.458 kb on - strand, within LRK54_RS02025 at 426.458 kb on - strand, within LRK54_RS02025 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.574 kb on + strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.575 kb on - strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.576 kb on + strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.577 kb on - strand, within LRK54_RS02030 at 426.660 kb on + strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.661 kb on - strand, within LRK54_RS02030 at 426.814 kb on + strand, within LRK54_RS02030 at 426.958 kb on + strand at 427.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_washed remove 424,575 + -1.3 424,575 + +0.3 424,575 + -0.9 424,575 + -0.2 424,575 + +0.4 424,575 + -0.4 424,575 + +0.0 424,575 + +1.1 424,575 + -0.6 424,575 + +0.5 424,575 + -1.1 424,575 + -0.4 424,575 + +0.7 424,575 + +0.2 424,575 + +1.0 424,575 + -2.2 424,575 + +0.5 424,576 - +0.1 424,576 - +0.4 424,576 - -0.8 424,576 - -0.0 424,576 - +0.9 424,576 - -0.3 424,576 - +0.6 424,576 - -0.2 424,576 - -0.1 424,576 - -0.0 424,576 - -0.0 424,576 - -2.4 424,576 - -0.0 424,842 + LRK54_RS02015 0.26 -0.6 424,842 + LRK54_RS02015 0.26 -0.4 424,842 + LRK54_RS02015 0.26 +0.0 424,842 + LRK54_RS02015 0.26 -0.8 424,842 + LRK54_RS02015 0.26 +1.1 424,842 + LRK54_RS02015 0.26 -0.3 424,842 + LRK54_RS02015 0.26 -0.3 424,842 + LRK54_RS02015 0.26 +0.6 424,843 - LRK54_RS02015 0.26 +0.6 424,843 - LRK54_RS02015 0.26 -0.4 424,843 - LRK54_RS02015 0.26 -0.4 424,843 - LRK54_RS02015 0.26 +0.5 424,843 - LRK54_RS02015 0.26 -0.0 424,843 - LRK54_RS02015 0.26 +0.7 424,867 + LRK54_RS02015 0.29 +1.6 424,868 - LRK54_RS02015 0.29 -0.0 424,868 - LRK54_RS02015 0.29 -1.6 424,868 - LRK54_RS02015 0.29 -0.2 424,902 + LRK54_RS02015 0.33 -1.9 424,902 + LRK54_RS02015 0.33 -0.6 424,903 - LRK54_RS02015 0.33 +0.6 424,903 - LRK54_RS02015 0.33 -0.7 424,903 - LRK54_RS02015 0.33 -1.0 424,903 - LRK54_RS02015 0.33 -0.4 424,903 - LRK54_RS02015 0.33 -0.0 424,903 - LRK54_RS02015 0.33 -1.3 424,903 - LRK54_RS02015 0.33 +0.0 425,023 + LRK54_RS02015 0.46 +1.6 425,023 + LRK54_RS02015 0.46 -0.2 425,023 + LRK54_RS02015 0.46 -0.4 425,023 + LRK54_RS02015 0.46 -0.8 425,023 + LRK54_RS02015 0.46 -1.2 425,023 + LRK54_RS02015 0.46 -1.6 425,023 + LRK54_RS02015 0.46 +0.8 425,023 + LRK54_RS02015 0.46 -0.6 425,023 + LRK54_RS02015 0.46 -1.4 425,023 + LRK54_RS02015 0.46 -0.9 425,023 + LRK54_RS02015 0.46 +0.2 425,024 - LRK54_RS02015 0.46 +1.6 425,024 - LRK54_RS02015 0.46 -0.7 425,024 - LRK54_RS02015 0.46 -0.0 425,024 - LRK54_RS02015 0.46 +3.1 425,024 - LRK54_RS02015 0.46 -0.6 425,024 - LRK54_RS02015 0.46 -0.8 425,024 - LRK54_RS02015 0.46 -0.3 425,024 - LRK54_RS02015 0.46 -0.2 425,024 - LRK54_RS02015 0.46 -0.4 425,024 - LRK54_RS02015 0.46 +0.2 425,024 - LRK54_RS02015 0.46 +0.0 425,024 - LRK54_RS02015 0.46 -1.3 425,024 - LRK54_RS02015 0.46 -1.4 425,024 - LRK54_RS02015 0.46 +1.2 425,024 - LRK54_RS02015 0.46 -0.8 425,024 - LRK54_RS02015 0.46 -0.1 425,024 - LRK54_RS02015 0.46 +1.6 425,024 - LRK54_RS02015 0.46 +1.6 425,024 - LRK54_RS02015 0.46 -0.9 425,024 - LRK54_RS02015 0.46 -2.1 425,024 - LRK54_RS02015 0.46 -0.8 425,523 + -1.0 425,523 + +2.6 425,523 + -0.5 425,523 + -1.0 425,523 + +0.3 425,523 + -0.1 425,523 + +0.6 425,523 + -1.4 425,523 + -0.0 425,523 + +0.4 425,523 + +0.6 425,523 + -0.9 425,523 + -1.8 425,523 + -0.8 425,523 + -1.6 425,523 + +1.0 425,523 + -0.7 425,523 + -0.7 425,523 + -0.2 425,523 + +3.6 425,524 - -2.1 425,524 - +0.2 425,524 - -0.2 425,524 - -1.0 425,524 - +0.3 425,524 - +0.3 425,524 - -0.2 425,524 - -1.1 425,524 - -0.8 425,524 - -2.1 425,524 - -0.0 425,524 - +0.4 425,524 - -1.8 425,524 - +0.1 425,524 - -0.2 425,524 - -0.8 425,948 + LRK54_RS02020 0.71 +0.1 425,948 + LRK54_RS02020 0.71 -2.9 425,948 + LRK54_RS02020 0.71 -0.8 425,949 - LRK54_RS02020 0.71 -0.7 425,949 - LRK54_RS02020 0.71 -1.2 426,062 + -0.4 426,062 + +0.6 426,062 + -1.6 426,062 + -0.4 426,062 + -0.8 426,062 + -1.0 426,062 + -0.4 426,063 - -1.0 426,063 - +2.0 426,063 - -0.4 426,063 - -0.5 426,063 - +0.9 426,063 - -0.2 426,063 - +0.6 426,063 - -0.8 426,063 - +0.4 426,065 + +0.6 426,066 - -0.5 426,145 + -2.0 426,145 + -0.6 426,146 - -0.5 426,146 - -0.3 426,146 - -0.4 426,146 - -2.1 426,175 + LRK54_RS02025 0.17 -0.4 426,175 + LRK54_RS02025 0.17 -0.6 426,175 + LRK54_RS02025 0.17 -0.3 426,175 + LRK54_RS02025 0.17 +2.1 426,175 + LRK54_RS02025 0.17 +0.3 426,175 + LRK54_RS02025 0.17 -2.7 426,176 - LRK54_RS02025 0.17 -0.2 426,176 - LRK54_RS02025 0.17 +0.3 426,317 + LRK54_RS02025 0.53 +0.1 426,318 - LRK54_RS02025 0.53 +1.6 426,436 + LRK54_RS02025 0.83 -0.2 426,436 + LRK54_RS02025 0.83 -1.9 426,436 + LRK54_RS02025 0.83 -0.9 426,436 + LRK54_RS02025 0.83 -0.6 426,436 + LRK54_RS02025 0.83 +0.7 426,437 - LRK54_RS02025 0.84 +0.1 426,437 - LRK54_RS02025 0.84 -0.6 426,437 - LRK54_RS02025 0.84 +1.6 426,437 - LRK54_RS02025 0.84 -1.4 426,437 - LRK54_RS02025 0.84 -1.2 426,437 - LRK54_RS02025 0.84 -1.2 426,437 - LRK54_RS02025 0.84 +0.3 426,437 - LRK54_RS02025 0.84 -0.1 426,457 + LRK54_RS02025 0.89 +1.6 426,457 + LRK54_RS02025 0.89 -0.9 426,458 - LRK54_RS02025 0.89 +0.6 426,458 - LRK54_RS02025 0.89 -0.8 426,574 + LRK54_RS02030 0.19 +0.2 426,574 + LRK54_RS02030 0.19 +0.6 426,574 + LRK54_RS02030 0.19 -0.8 426,574 + LRK54_RS02030 0.19 -1.3 426,574 + LRK54_RS02030 0.19 +1.2 426,574 + LRK54_RS02030 0.19 -0.5 426,574 + LRK54_RS02030 0.19 +1.7 426,574 + LRK54_RS02030 0.19 +0.2 426,574 + LRK54_RS02030 0.19 +0.3 426,574 + LRK54_RS02030 0.19 +0.9 426,574 + LRK54_RS02030 0.19 +0.5 426,574 + LRK54_RS02030 0.19 +0.6 426,575 - LRK54_RS02030 0.20 -0.4 426,575 - LRK54_RS02030 0.20 -0.7 426,575 - LRK54_RS02030 0.20 +1.2 426,575 - LRK54_RS02030 0.20 +0.9 426,575 - LRK54_RS02030 0.20 -1.4 426,575 - LRK54_RS02030 0.20 -1.0 426,575 - LRK54_RS02030 0.20 -1.4 426,575 - LRK54_RS02030 0.20 -2.1 426,576 + LRK54_RS02030 0.20 -0.0 426,576 + LRK54_RS02030 0.20 -0.4 426,576 + LRK54_RS02030 0.20 -1.2 426,576 + LRK54_RS02030 0.20 -1.0 426,576 + LRK54_RS02030 0.20 -0.5 426,576 + LRK54_RS02030 0.20 -0.7 426,577 - LRK54_RS02030 0.20 -0.0 426,577 - LRK54_RS02030 0.20 -0.3 426,577 - LRK54_RS02030 0.20 -0.8 426,577 - LRK54_RS02030 0.20 +0.6 426,577 - LRK54_RS02030 0.20 +1.0 426,577 - LRK54_RS02030 0.20 -0.2 426,577 - LRK54_RS02030 0.20 -0.1 426,577 - LRK54_RS02030 0.20 +0.7 426,577 - LRK54_RS02030 0.20 +1.0 426,577 - LRK54_RS02030 0.20 -0.5 426,577 - LRK54_RS02030 0.20 -0.3 426,577 - LRK54_RS02030 0.20 -0.8 426,660 + LRK54_RS02030 0.41 +1.6 426,661 - LRK54_RS02030 0.41 -0.4 426,661 - LRK54_RS02030 0.41 -0.4 426,661 - LRK54_RS02030 0.41 -0.3 426,814 + LRK54_RS02030 0.79 +0.1 426,958 + +0.2 427,082 - -0.3
Or see this region's nucleotide sequence