Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03339

Experiment: LB plate, 1:1 coculture with Enterobacter_TBS_079

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03337 and MPMX20_03338 are separated by 119 nucleotidesMPMX20_03338 and MPMX20_03339 are separated by 109 nucleotidesMPMX20_03339 and MPMX20_03340 are separated by 16 nucleotides MPMX20_03337: MPMX20_03337 - hypothetical protein, at 3,510,882 to 3,511,751 _03337 MPMX20_03338: MPMX20_03338 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 3,511,871 to 3,512,584 _03338 MPMX20_03339: MPMX20_03339 - Outer membrane protein assembly factor BamC, at 3,512,694 to 3,513,728 _03339 MPMX20_03340: MPMX20_03340 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,513,745 to 3,514,623 _03340 Position (kb) 3512 3513 3514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3511.718 kb on - strandat 3511.736 kb on + strandat 3511.744 kb on - strandat 3511.744 kb on - strandat 3511.754 kb on - strandat 3511.754 kb on - strandat 3511.754 kb on - strandat 3511.755 kb on - strandat 3511.826 kb on + strandat 3511.842 kb on - strandat 3511.887 kb on + strandat 3511.895 kb on - strandat 3511.895 kb on - strandat 3511.922 kb on - strandat 3512.018 kb on - strand, within MPMX20_03338at 3512.031 kb on + strand, within MPMX20_03338at 3512.031 kb on + strand, within MPMX20_03338at 3512.031 kb on + strand, within MPMX20_03338at 3512.039 kb on - strand, within MPMX20_03338at 3512.069 kb on + strand, within MPMX20_03338at 3512.069 kb on + strand, within MPMX20_03338at 3512.077 kb on - strand, within MPMX20_03338at 3512.077 kb on - strand, within MPMX20_03338at 3512.162 kb on + strand, within MPMX20_03338at 3512.170 kb on - strand, within MPMX20_03338at 3512.175 kb on + strand, within MPMX20_03338at 3512.278 kb on + strand, within MPMX20_03338at 3512.381 kb on + strand, within MPMX20_03338at 3512.526 kb on - strandat 3512.545 kb on - strandat 3512.564 kb on + strandat 3512.613 kb on + strandat 3512.682 kb on - strandat 3512.755 kb on - strandat 3512.793 kb on - strandat 3512.882 kb on - strand, within MPMX20_03339at 3512.979 kb on - strand, within MPMX20_03339at 3513.071 kb on - strand, within MPMX20_03339at 3513.136 kb on - strand, within MPMX20_03339at 3513.197 kb on + strand, within MPMX20_03339at 3513.205 kb on - strand, within MPMX20_03339at 3513.309 kb on + strand, within MPMX20_03339at 3513.317 kb on - strand, within MPMX20_03339at 3513.348 kb on - strand, within MPMX20_03339at 3513.348 kb on - strand, within MPMX20_03339at 3513.348 kb on - strand, within MPMX20_03339at 3513.348 kb on - strand, within MPMX20_03339at 3513.456 kb on - strand, within MPMX20_03339at 3513.465 kb on + strand, within MPMX20_03339at 3513.496 kb on + strand, within MPMX20_03339at 3513.644 kb on + strandat 3513.659 kb on - strandat 3513.716 kb on - strandat 3513.763 kb on + strandat 3514.634 kb on - strandat 3514.644 kb on - strandat 3514.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Enterobacter_TBS_079
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3,511,718 - +3.7
3,511,736 + +0.6
3,511,744 - -3.0
3,511,744 - +0.9
3,511,754 - +0.3
3,511,754 - +0.0
3,511,754 - -1.1
3,511,755 - -1.1
3,511,826 + -1.9
3,511,842 - -0.1
3,511,887 + +2.2
3,511,895 - +0.1
3,511,895 - -1.5
3,511,922 - -1.0
3,512,018 - MPMX20_03338 0.21 -1.6
3,512,031 + MPMX20_03338 0.22 +0.3
3,512,031 + MPMX20_03338 0.22 +0.3
3,512,031 + MPMX20_03338 0.22 -1.7
3,512,039 - MPMX20_03338 0.24 -1.7
3,512,069 + MPMX20_03338 0.28 -0.6
3,512,069 + MPMX20_03338 0.28 -1.4
3,512,077 - MPMX20_03338 0.29 -0.4
3,512,077 - MPMX20_03338 0.29 +1.3
3,512,162 + MPMX20_03338 0.41 -0.7
3,512,170 - MPMX20_03338 0.42 -2.2
3,512,175 + MPMX20_03338 0.43 -2.2
3,512,278 + MPMX20_03338 0.57 +0.6
3,512,381 + MPMX20_03338 0.71 +1.3
3,512,526 - +1.0
3,512,545 - -1.2
3,512,564 + +1.9
3,512,613 + -0.5
3,512,682 - +0.0
3,512,755 - -0.3
3,512,793 - -0.4
3,512,882 - MPMX20_03339 0.18 +0.2
3,512,979 - MPMX20_03339 0.28 -1.0
3,513,071 - MPMX20_03339 0.36 -0.6
3,513,136 - MPMX20_03339 0.43 +5.1
3,513,197 + MPMX20_03339 0.49 +1.0
3,513,205 - MPMX20_03339 0.49 -2.4
3,513,309 + MPMX20_03339 0.59 +1.8
3,513,317 - MPMX20_03339 0.60 +1.4
3,513,348 - MPMX20_03339 0.63 -1.0
3,513,348 - MPMX20_03339 0.63 +1.4
3,513,348 - MPMX20_03339 0.63 -1.5
3,513,348 - MPMX20_03339 0.63 -1.9
3,513,456 - MPMX20_03339 0.74 +1.4
3,513,465 + MPMX20_03339 0.74 +0.8
3,513,496 + MPMX20_03339 0.77 +0.0
3,513,644 + +1.1
3,513,659 - -0.2
3,513,716 - -2.7
3,513,763 + +0.3
3,514,634 - +0.3
3,514,644 - -1.1
3,514,669 - -2.5

Or see this region's nucleotide sequence