Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18535 and RALBFv3_RS18540 are separated by 15 nucleotides RALBFv3_RS18540 and RALBFv3_RS18545 are separated by 109 nucleotides
RALBFv3_RS18535: RALBFv3_RS18535 - membrane protein, at 685,691 to 687,313
_RS18535
RALBFv3_RS18540: RALBFv3_RS18540 - sigma-54-dependent Fis family transcriptional regulator, at 687,329 to 688,738
_RS18540
RALBFv3_RS18545: RALBFv3_RS18545 - DUF2968 domain-containing protein, at 688,848 to 689,639
_RS18545
Position (kb) 687
688
689 Strain fitness (log2 ratio) -1
0
1
2
3 at 686.411 kb on - strand, within RALBFv3_RS18535 at 686.665 kb on + strand, within RALBFv3_RS18535 at 686.665 kb on + strand, within RALBFv3_RS18535 at 686.666 kb on - strand, within RALBFv3_RS18535 at 686.666 kb on - strand, within RALBFv3_RS18535 at 686.811 kb on - strand, within RALBFv3_RS18535 at 686.983 kb on + strand, within RALBFv3_RS18535 at 687.257 kb on + strand at 687.273 kb on + strand at 687.274 kb on - strand at 687.328 kb on + strand at 687.351 kb on - strand at 687.536 kb on - strand, within RALBFv3_RS18540 at 687.626 kb on + strand, within RALBFv3_RS18540 at 687.626 kb on + strand, within RALBFv3_RS18540 at 687.627 kb on - strand, within RALBFv3_RS18540 at 687.882 kb on - strand, within RALBFv3_RS18540 at 687.986 kb on + strand, within RALBFv3_RS18540 at 687.986 kb on + strand, within RALBFv3_RS18540 at 687.987 kb on - strand, within RALBFv3_RS18540 at 687.987 kb on - strand, within RALBFv3_RS18540 at 688.061 kb on + strand, within RALBFv3_RS18540 at 688.214 kb on + strand, within RALBFv3_RS18540 at 688.215 kb on - strand, within RALBFv3_RS18540 at 688.382 kb on + strand, within RALBFv3_RS18540 at 688.383 kb on - strand, within RALBFv3_RS18540 at 688.695 kb on - strand at 688.803 kb on - strand at 688.804 kb on + strand at 688.804 kb on + strand at 688.805 kb on - strand at 688.805 kb on - strand at 688.879 kb on + strand at 688.880 kb on - strand at 688.880 kb on - strand at 688.880 kb on - strand at 688.880 kb on - strand at 689.187 kb on - strand, within RALBFv3_RS18545 at 689.194 kb on - strand, within RALBFv3_RS18545 at 689.194 kb on - strand, within RALBFv3_RS18545 at 689.194 kb on - strand, within RALBFv3_RS18545 at 689.244 kb on + strand, within RALBFv3_RS18545 at 689.245 kb on - strand, within RALBFv3_RS18545 at 689.245 kb on - strand, within RALBFv3_RS18545 at 689.247 kb on + strand, within RALBFv3_RS18545 at 689.247 kb on + strand, within RALBFv3_RS18545 at 689.248 kb on - strand, within RALBFv3_RS18545 at 689.248 kb on - strand, within RALBFv3_RS18545 at 689.323 kb on - strand, within RALBFv3_RS18545
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 686,411 - RALBFv3_RS18535 0.44 +2.8 686,665 + RALBFv3_RS18535 0.60 +0.6 686,665 + RALBFv3_RS18535 0.60 -0.3 686,666 - RALBFv3_RS18535 0.60 -1.5 686,666 - RALBFv3_RS18535 0.60 +0.1 686,811 - RALBFv3_RS18535 0.69 +0.6 686,983 + RALBFv3_RS18535 0.80 +2.5 687,257 + -0.0 687,273 + +0.7 687,274 - +0.4 687,328 + +0.5 687,351 - -0.2 687,536 - RALBFv3_RS18540 0.15 -0.8 687,626 + RALBFv3_RS18540 0.21 -0.8 687,626 + RALBFv3_RS18540 0.21 -0.3 687,627 - RALBFv3_RS18540 0.21 -1.3 687,882 - RALBFv3_RS18540 0.39 -0.9 687,986 + RALBFv3_RS18540 0.47 +0.0 687,986 + RALBFv3_RS18540 0.47 -1.4 687,987 - RALBFv3_RS18540 0.47 +0.4 687,987 - RALBFv3_RS18540 0.47 -0.2 688,061 + RALBFv3_RS18540 0.52 -1.5 688,214 + RALBFv3_RS18540 0.63 +1.7 688,215 - RALBFv3_RS18540 0.63 -1.0 688,382 + RALBFv3_RS18540 0.75 +0.1 688,383 - RALBFv3_RS18540 0.75 -0.5 688,695 - +0.5 688,803 - +0.2 688,804 + -0.6 688,804 + -0.3 688,805 - -0.6 688,805 - +0.4 688,879 + -0.3 688,880 - -0.2 688,880 - +0.4 688,880 - -0.6 688,880 - -0.4 689,187 - RALBFv3_RS18545 0.43 -0.8 689,194 - RALBFv3_RS18545 0.44 -0.1 689,194 - RALBFv3_RS18545 0.44 -0.3 689,194 - RALBFv3_RS18545 0.44 -0.8 689,244 + RALBFv3_RS18545 0.50 -0.0 689,245 - RALBFv3_RS18545 0.50 -1.1 689,245 - RALBFv3_RS18545 0.50 +0.4 689,247 + RALBFv3_RS18545 0.50 -0.0 689,247 + RALBFv3_RS18545 0.50 +0.5 689,248 - RALBFv3_RS18545 0.51 -0.1 689,248 - RALBFv3_RS18545 0.51 +1.7 689,323 - RALBFv3_RS18545 0.60 -0.6
Or see this region's nucleotide sequence