Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18070 and RALBFv3_RS18075 are separated by 84 nucleotides RALBFv3_RS18075 and RALBFv3_RS18080 are separated by 263 nucleotides
RALBFv3_RS18070: RALBFv3_RS18070 - methyl-accepting chemotaxis protein, at 574,915 to 576,483
_RS18070
RALBFv3_RS18075: RALBFv3_RS18075 - GGDEF domain-containing protein, at 576,568 to 577,980
_RS18075
RALBFv3_RS18080: RALBFv3_RS18080 - cytochrome ubiquinol oxidase subunit I, at 578,244 to 579,734
_RS18080
Position (kb) 576
577
578 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 576.612 kb on + strand at 576.654 kb on - strand at 576.654 kb on - strand at 577.773 kb on - strand, within RALBFv3_RS18075 at 577.980 kb on + strand at 577.980 kb on + strand at 577.980 kb on + strand at 577.980 kb on + strand at 577.981 kb on - strand at 577.981 kb on - strand at 577.981 kb on - strand at 577.981 kb on - strand at 578.000 kb on - strand at 578.082 kb on + strand at 578.082 kb on + strand at 578.083 kb on - strand at 578.083 kb on - strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.230 kb on - strand at 578.230 kb on - strand at 578.230 kb on - strand at 578.595 kb on + strand, within RALBFv3_RS18080 at 578.596 kb on - strand, within RALBFv3_RS18080 at 578.606 kb on + strand, within RALBFv3_RS18080 at 578.855 kb on + strand, within RALBFv3_RS18080 at 578.910 kb on + strand, within RALBFv3_RS18080 at 578.910 kb on + strand, within RALBFv3_RS18080 at 578.914 kb on - strand, within RALBFv3_RS18080 at 578.914 kb on - strand, within RALBFv3_RS18080
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 576,612 + +0.3 576,654 - -0.1 576,654 - +0.6 577,773 - RALBFv3_RS18075 0.85 +0.5 577,980 + +0.1 577,980 + -1.2 577,980 + +0.3 577,980 + -1.3 577,981 - -0.0 577,981 - -0.6 577,981 - -0.6 577,981 - -1.5 578,000 - -0.9 578,082 + -0.2 578,082 + +1.5 578,083 - -0.4 578,083 - +1.2 578,229 + -0.2 578,229 + -1.2 578,229 + +1.8 578,230 - -1.7 578,230 - -0.0 578,230 - -1.5 578,595 + RALBFv3_RS18080 0.24 +2.8 578,596 - RALBFv3_RS18080 0.24 -0.1 578,606 + RALBFv3_RS18080 0.24 +1.5 578,855 + RALBFv3_RS18080 0.41 -1.0 578,910 + RALBFv3_RS18080 0.45 -2.2 578,910 + RALBFv3_RS18080 0.45 +0.3 578,914 - RALBFv3_RS18080 0.45 +0.5 578,914 - RALBFv3_RS18080 0.45 -1.0
Or see this region's nucleotide sequence