Experiment: tomato xylem local (total stem)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17885 and RALBFv3_RS17890 are separated by 35 nucleotides RALBFv3_RS17890 and RALBFv3_RS17895 are separated by 781 nucleotides
RALBFv3_RS17885: RALBFv3_RS17885 - alcohol dehydrogenase, at 518,868 to 520,037
_RS17885
RALBFv3_RS17890: RALBFv3_RS17890 - 4-hydroxy-tetrahydrodipicolinate synthase, at 520,073 to 520,969
_RS17890
RALBFv3_RS17895: RALBFv3_RS17895 - TetR/AcrR family transcriptional regulator, at 521,751 to 522,407
_RS17895
Position (kb) 520
521 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 519.335 kb on - strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 520.024 kb on + strand at 520.025 kb on - strand at 520.025 kb on - strand at 520.098 kb on + strand at 520.099 kb on - strand at 520.212 kb on + strand, within RALBFv3_RS17890 at 520.561 kb on + strand, within RALBFv3_RS17890 at 520.561 kb on + strand, within RALBFv3_RS17890 at 520.564 kb on - strand, within RALBFv3_RS17890 at 520.564 kb on - strand, within RALBFv3_RS17890 at 520.605 kb on + strand, within RALBFv3_RS17890 at 520.605 kb on + strand, within RALBFv3_RS17890 at 521.130 kb on + strand at 521.131 kb on - strand at 521.131 kb on - strand at 521.342 kb on + strand at 521.343 kb on - strand at 521.343 kb on - strand at 521.343 kb on - strand at 521.343 kb on - strand at 521.440 kb on + strand at 521.723 kb on + strand at 521.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction tomato xylem local (total stem) remove 519,335 - RALBFv3_RS17885 0.40 +3.9 519,418 + RALBFv3_RS17885 0.47 -0.9 519,418 + RALBFv3_RS17885 0.47 +1.0 519,418 + RALBFv3_RS17885 0.47 -1.9 519,418 + RALBFv3_RS17885 0.47 +1.4 519,418 + RALBFv3_RS17885 0.47 +0.4 519,418 + RALBFv3_RS17885 0.47 +0.9 519,419 - RALBFv3_RS17885 0.47 -0.9 519,419 - RALBFv3_RS17885 0.47 +1.7 519,419 - RALBFv3_RS17885 0.47 -0.8 520,024 + -1.5 520,025 - -0.7 520,025 - -1.0 520,098 + -0.6 520,099 - +1.0 520,212 + RALBFv3_RS17890 0.15 +3.0 520,561 + RALBFv3_RS17890 0.54 +1.8 520,561 + RALBFv3_RS17890 0.54 -0.8 520,564 - RALBFv3_RS17890 0.55 -0.7 520,564 - RALBFv3_RS17890 0.55 +1.0 520,605 + RALBFv3_RS17890 0.59 -0.6 520,605 + RALBFv3_RS17890 0.59 -0.3 521,130 + +1.2 521,131 - -0.6 521,131 - -0.7 521,342 + -1.2 521,343 - -1.1 521,343 - +2.5 521,343 - -1.1 521,343 - -1.1 521,440 + +1.2 521,723 + +0.2 521,724 - +0.3
Or see this region's nucleotide sequence