Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17570 and HMPREF1058_RS17565 are separated by 444 nucleotides HMPREF1058_RS17565 and HMPREF1058_RS0119335 are separated by 116 nucleotides
HMPREF1058_RS17570: HMPREF1058_RS17570 - RteC domain-containing protein, at 394,229 to 395,089
_RS17570
HMPREF1058_RS17565: HMPREF1058_RS17565 - tyrosine-type recombinase/integrase, at 395,534 to 395,881
_RS17565
HMPREF1058_RS0119335: HMPREF1058_RS0119335 - site-specific integrase, at 395,998 to 397,231
_RS0119335
Position (kb) 395
396 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.540 kb on + strand, within HMPREF1058_RS17570 at 394.579 kb on + strand at 394.623 kb on + strand, within HMPREF1058_RS17570 at 394.632 kb on - strand, within HMPREF1058_RS17570 at 394.682 kb on - strand, within HMPREF1058_RS17570 at 394.712 kb on + strand, within HMPREF1058_RS17570 at 394.745 kb on + strand, within HMPREF1058_RS17570 at 394.892 kb on + strand, within HMPREF1058_RS17570 at 394.893 kb on - strand, within HMPREF1058_RS17570 at 394.893 kb on - strand, within HMPREF1058_RS17570 at 394.929 kb on + strand, within HMPREF1058_RS17570 at 394.946 kb on + strand, within HMPREF1058_RS17570 at 394.947 kb on - strand, within HMPREF1058_RS17570 at 394.950 kb on + strand, within HMPREF1058_RS17570 at 394.951 kb on - strand, within HMPREF1058_RS17570 at 394.951 kb on - strand, within HMPREF1058_RS17570 at 394.968 kb on + strand, within HMPREF1058_RS17570 at 394.974 kb on + strand, within HMPREF1058_RS17570 at 394.983 kb on - strand, within HMPREF1058_RS17570 at 394.990 kb on + strand, within HMPREF1058_RS17570 at 394.991 kb on - strand, within HMPREF1058_RS17570 at 395.050 kb on - strand at 395.142 kb on + strand at 395.192 kb on + strand at 395.473 kb on + strand at 395.473 kb on + strand at 395.474 kb on - strand at 395.549 kb on + strand at 395.549 kb on + strand at 395.550 kb on - strand at 395.565 kb on - strand at 395.666 kb on + strand, within HMPREF1058_RS17565 at 395.716 kb on - strand, within HMPREF1058_RS17565 at 395.808 kb on - strand, within HMPREF1058_RS17565 at 396.406 kb on + strand, within HMPREF1058_RS0119335 at 396.407 kb on - strand, within HMPREF1058_RS0119335 at 396.600 kb on - strand, within HMPREF1058_RS0119335
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 394,540 + HMPREF1058_RS17570 0.36 +0.1 394,579 + +1.3 394,623 + HMPREF1058_RS17570 0.46 -0.2 394,632 - HMPREF1058_RS17570 0.47 +0.6 394,682 - HMPREF1058_RS17570 0.53 +0.2 394,712 + HMPREF1058_RS17570 0.56 +1.4 394,745 + HMPREF1058_RS17570 0.60 -0.1 394,892 + HMPREF1058_RS17570 0.77 -0.7 394,893 - HMPREF1058_RS17570 0.77 -0.8 394,893 - HMPREF1058_RS17570 0.77 -0.7 394,929 + HMPREF1058_RS17570 0.81 -1.4 394,946 + HMPREF1058_RS17570 0.83 +0.1 394,947 - HMPREF1058_RS17570 0.83 +0.8 394,950 + HMPREF1058_RS17570 0.84 -1.8 394,951 - HMPREF1058_RS17570 0.84 +1.0 394,951 - HMPREF1058_RS17570 0.84 -1.2 394,968 + HMPREF1058_RS17570 0.86 -0.1 394,974 + HMPREF1058_RS17570 0.87 -0.8 394,983 - HMPREF1058_RS17570 0.88 +1.4 394,990 + HMPREF1058_RS17570 0.88 +0.2 394,991 - HMPREF1058_RS17570 0.89 +2.4 395,050 - +1.7 395,142 + +0.3 395,192 + +0.6 395,473 + -0.9 395,473 + +0.2 395,474 - +0.9 395,549 + +0.3 395,549 + -1.6 395,550 - +1.7 395,565 - +0.2 395,666 + HMPREF1058_RS17565 0.38 -1.4 395,716 - HMPREF1058_RS17565 0.52 -0.6 395,808 - HMPREF1058_RS17565 0.79 -1.2 396,406 + HMPREF1058_RS0119335 0.33 +1.6 396,407 - HMPREF1058_RS0119335 0.33 +0.7 396,600 - HMPREF1058_RS0119335 0.49 +0.4
Or see this region's nucleotide sequence