Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17180 and HMPREF1058_RS17175 are separated by 158 nucleotides HMPREF1058_RS17175 and HMPREF1058_RS17170 are separated by 187 nucleotides HMPREF1058_RS17170 and HMPREF1058_RS17165 are separated by 157 nucleotides
HMPREF1058_RS17180: HMPREF1058_RS17180 - FAD:protein FMN transferase, at 507,850 to 508,866
_RS17180
HMPREF1058_RS17175: HMPREF1058_RS17175 - MarC family protein, at 509,025 to 509,627
_RS17175
HMPREF1058_RS17170: HMPREF1058_RS17170 - Crp/Fnr family transcriptional regulator, at 509,815 to 510,492
_RS17170
HMPREF1058_RS17165: HMPREF1058_RS17165 - M3 family metallopeptidase, at 510,650 to 512,692
_RS17165
Position (kb) 509
510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 508.882 kb on - strand at 508.980 kb on - strand at 508.980 kb on - strand at 508.983 kb on + strand at 508.984 kb on - strand at 509.001 kb on + strand at 509.002 kb on - strand at 509.024 kb on - strand at 509.072 kb on + strand at 509.088 kb on + strand, within HMPREF1058_RS17175 at 509.226 kb on + strand, within HMPREF1058_RS17175 at 509.236 kb on + strand, within HMPREF1058_RS17175 at 509.445 kb on - strand, within HMPREF1058_RS17175 at 509.543 kb on + strand, within HMPREF1058_RS17175 at 509.549 kb on + strand, within HMPREF1058_RS17175 at 509.561 kb on + strand, within HMPREF1058_RS17175 at 509.562 kb on - strand, within HMPREF1058_RS17175 at 509.627 kb on + strand at 509.655 kb on - strand at 509.655 kb on - strand at 509.657 kb on - strand at 509.682 kb on + strand at 509.683 kb on - strand at 509.745 kb on + strand at 509.773 kb on - strand at 509.781 kb on - strand at 509.791 kb on - strand at 509.824 kb on - strand at 509.830 kb on + strand at 509.831 kb on - strand at 509.835 kb on + strand at 509.903 kb on + strand, within HMPREF1058_RS17170 at 509.904 kb on - strand, within HMPREF1058_RS17170 at 509.984 kb on + strand, within HMPREF1058_RS17170 at 509.996 kb on + strand, within HMPREF1058_RS17170 at 510.028 kb on + strand, within HMPREF1058_RS17170 at 510.035 kb on + strand at 510.065 kb on + strand, within HMPREF1058_RS17170 at 510.100 kb on + strand, within HMPREF1058_RS17170 at 510.102 kb on + strand, within HMPREF1058_RS17170 at 510.102 kb on + strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.137 kb on + strand, within HMPREF1058_RS17170 at 510.138 kb on - strand, within HMPREF1058_RS17170 at 510.138 kb on - strand, within HMPREF1058_RS17170 at 510.155 kb on + strand, within HMPREF1058_RS17170 at 510.155 kb on + strand, within HMPREF1058_RS17170 at 510.156 kb on - strand, within HMPREF1058_RS17170 at 510.156 kb on - strand, within HMPREF1058_RS17170 at 510.198 kb on + strand, within HMPREF1058_RS17170 at 510.207 kb on - strand, within HMPREF1058_RS17170 at 510.219 kb on + strand, within HMPREF1058_RS17170 at 510.222 kb on + strand, within HMPREF1058_RS17170 at 510.222 kb on + strand, within HMPREF1058_RS17170 at 510.263 kb on + strand, within HMPREF1058_RS17170 at 510.263 kb on + strand, within HMPREF1058_RS17170 at 510.264 kb on - strand at 510.428 kb on + strand at 510.499 kb on - strand at 510.523 kb on + strand at 510.524 kb on - strand at 510.563 kb on - strand at 510.567 kb on - strand at 510.570 kb on - strand at 510.572 kb on - strand at 510.587 kb on + strand at 510.644 kb on - strand at 510.718 kb on + strand at 510.719 kb on - strand at 510.719 kb on - strand at 510.726 kb on + strand at 510.734 kb on + strand at 510.867 kb on + strand, within HMPREF1058_RS17165 at 511.008 kb on + strand, within HMPREF1058_RS17165 at 511.010 kb on + strand, within HMPREF1058_RS17165 at 511.070 kb on + strand, within HMPREF1058_RS17165 at 511.071 kb on - strand, within HMPREF1058_RS17165 at 511.146 kb on + strand, within HMPREF1058_RS17165 at 511.152 kb on + strand, within HMPREF1058_RS17165 at 511.152 kb on + strand, within HMPREF1058_RS17165 at 511.152 kb on + strand, within HMPREF1058_RS17165 at 511.340 kb on + strand, within HMPREF1058_RS17165 at 511.373 kb on + strand, within HMPREF1058_RS17165 at 511.373 kb on + strand, within HMPREF1058_RS17165 at 511.382 kb on + strand, within HMPREF1058_RS17165 at 511.385 kb on - strand, within HMPREF1058_RS17165 at 511.385 kb on - strand, within HMPREF1058_RS17165 at 511.388 kb on - strand, within HMPREF1058_RS17165 at 511.470 kb on + strand, within HMPREF1058_RS17165 at 511.473 kb on + strand, within HMPREF1058_RS17165
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 508,882 - -0.5 508,980 - +0.0 508,980 - +0.7 508,983 + -1.0 508,984 - -0.9 509,001 + -1.3 509,002 - -0.8 509,024 - +1.2 509,072 + -1.2 509,088 + HMPREF1058_RS17175 0.10 -0.4 509,226 + HMPREF1058_RS17175 0.33 -1.8 509,236 + HMPREF1058_RS17175 0.35 -0.7 509,445 - HMPREF1058_RS17175 0.70 -1.2 509,543 + HMPREF1058_RS17175 0.86 +0.1 509,549 + HMPREF1058_RS17175 0.87 -1.5 509,561 + HMPREF1058_RS17175 0.89 -1.5 509,562 - HMPREF1058_RS17175 0.89 -1.9 509,627 + -2.4 509,655 - -1.2 509,655 - -0.3 509,657 - +0.5 509,682 + -0.3 509,683 - -0.2 509,745 + +0.9 509,773 - -1.7 509,781 - -1.2 509,791 - +1.9 509,824 - -2.5 509,830 + -2.0 509,831 - -0.7 509,835 + +0.2 509,903 + HMPREF1058_RS17170 0.13 +0.1 509,904 - HMPREF1058_RS17170 0.13 -0.4 509,984 + HMPREF1058_RS17170 0.25 -3.2 509,996 + HMPREF1058_RS17170 0.27 -1.1 510,028 + HMPREF1058_RS17170 0.31 -1.2 510,035 + -0.5 510,065 + HMPREF1058_RS17170 0.37 -1.1 510,100 + HMPREF1058_RS17170 0.42 +1.3 510,102 + HMPREF1058_RS17170 0.42 -0.8 510,102 + HMPREF1058_RS17170 0.42 -2.0 510,124 - HMPREF1058_RS17170 0.46 -3.3 510,124 - HMPREF1058_RS17170 0.46 -0.4 510,124 - HMPREF1058_RS17170 0.46 +0.9 510,137 + HMPREF1058_RS17170 0.47 -1.6 510,138 - HMPREF1058_RS17170 0.48 +2.9 510,138 - HMPREF1058_RS17170 0.48 -0.7 510,155 + HMPREF1058_RS17170 0.50 -2.0 510,155 + HMPREF1058_RS17170 0.50 -2.7 510,156 - HMPREF1058_RS17170 0.50 +0.9 510,156 - HMPREF1058_RS17170 0.50 -1.7 510,198 + HMPREF1058_RS17170 0.56 -1.7 510,207 - HMPREF1058_RS17170 0.58 -0.6 510,219 + HMPREF1058_RS17170 0.60 -0.9 510,222 + HMPREF1058_RS17170 0.60 -1.6 510,222 + HMPREF1058_RS17170 0.60 -1.8 510,263 + HMPREF1058_RS17170 0.66 -1.9 510,263 + HMPREF1058_RS17170 0.66 -0.1 510,264 - +0.1 510,428 + -2.0 510,499 - +0.8 510,523 + -0.6 510,524 - -1.5 510,563 - +3.6 510,567 - -0.7 510,570 - +0.3 510,572 - +3.8 510,587 + +0.6 510,644 - -0.4 510,718 + +0.8 510,719 - +0.3 510,719 - -0.2 510,726 + +0.6 510,734 + +2.0 510,867 + HMPREF1058_RS17165 0.11 +3.5 511,008 + HMPREF1058_RS17165 0.18 +4.8 511,010 + HMPREF1058_RS17165 0.18 +2.8 511,070 + HMPREF1058_RS17165 0.21 +3.6 511,071 - HMPREF1058_RS17165 0.21 +0.3 511,146 + HMPREF1058_RS17165 0.24 +2.8 511,152 + HMPREF1058_RS17165 0.25 +3.3 511,152 + HMPREF1058_RS17165 0.25 +2.7 511,152 + HMPREF1058_RS17165 0.25 +3.1 511,340 + HMPREF1058_RS17165 0.34 +6.3 511,373 + HMPREF1058_RS17165 0.35 +2.5 511,373 + HMPREF1058_RS17165 0.35 +3.9 511,382 + HMPREF1058_RS17165 0.36 +3.7 511,385 - HMPREF1058_RS17165 0.36 +0.9 511,385 - HMPREF1058_RS17165 0.36 -1.9 511,388 - HMPREF1058_RS17165 0.36 +2.9 511,470 + HMPREF1058_RS17165 0.40 +3.0 511,473 + HMPREF1058_RS17165 0.40 +3.9
Or see this region's nucleotide sequence