Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17100 and HMPREF1058_RS17095 are separated by 160 nucleotides HMPREF1058_RS17095 and HMPREF1058_RS17090 are separated by 5 nucleotides HMPREF1058_RS17090 and HMPREF1058_RS17085 are separated by 16 nucleotides HMPREF1058_RS17085 and HMPREF1058_RS17080 overlap by 14 nucleotides
HMPREF1058_RS17100: HMPREF1058_RS17100 - exodeoxyribonuclease III, at 520,644 to 521,402
_RS17100
HMPREF1058_RS17095: HMPREF1058_RS17095 - preprotein translocase subunit SecG, at 521,563 to 521,928
_RS17095
HMPREF1058_RS17090: HMPREF1058_RS17090 - hypothetical protein, at 521,934 to 522,686
_RS17090
HMPREF1058_RS17085: HMPREF1058_RS17085 - LptE family protein, at 522,703 to 523,230
_RS17085
HMPREF1058_RS17080: HMPREF1058_RS17080 - sigma-54-dependent Fis family transcriptional regulator, at 523,217 to 524,482
_RS17080
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 520.944 kb on + strand, within HMPREF1058_RS17100 at 520.944 kb on + strand, within HMPREF1058_RS17100 at 521.084 kb on + strand, within HMPREF1058_RS17100 at 521.087 kb on - strand, within HMPREF1058_RS17100 at 521.167 kb on + strand, within HMPREF1058_RS17100 at 521.234 kb on - strand, within HMPREF1058_RS17100 at 521.323 kb on - strand, within HMPREF1058_RS17100 at 521.377 kb on - strand at 521.412 kb on - strand at 521.414 kb on + strand at 521.447 kb on + strand at 521.462 kb on - strand at 521.561 kb on - strand at 522.187 kb on - strand, within HMPREF1058_RS17090 at 522.234 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.263 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.319 kb on - strand, within HMPREF1058_RS17090 at 522.375 kb on - strand, within HMPREF1058_RS17090 at 522.416 kb on + strand, within HMPREF1058_RS17090 at 522.444 kb on + strand, within HMPREF1058_RS17090 at 522.444 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.500 kb on - strand, within HMPREF1058_RS17090 at 522.512 kb on + strand, within HMPREF1058_RS17090 at 522.516 kb on + strand, within HMPREF1058_RS17090 at 522.517 kb on - strand, within HMPREF1058_RS17090 at 522.623 kb on - strand at 522.668 kb on - strand at 522.669 kb on + strand at 522.681 kb on + strand at 522.721 kb on - strand at 523.460 kb on - strand, within HMPREF1058_RS17080 at 523.508 kb on - strand, within HMPREF1058_RS17080
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 520,944 + HMPREF1058_RS17100 0.40 -0.4 520,944 + HMPREF1058_RS17100 0.40 -0.1 521,084 + HMPREF1058_RS17100 0.58 -0.3 521,087 - HMPREF1058_RS17100 0.58 -1.7 521,167 + HMPREF1058_RS17100 0.69 -0.1 521,234 - HMPREF1058_RS17100 0.78 +2.5 521,323 - HMPREF1058_RS17100 0.89 +0.2 521,377 - +0.1 521,412 - +1.6 521,414 + -1.4 521,447 + -0.5 521,462 - -0.9 521,561 - -0.3 522,187 - HMPREF1058_RS17090 0.34 -1.5 522,234 + HMPREF1058_RS17090 0.40 +0.1 522,261 + HMPREF1058_RS17090 0.43 -1.1 522,261 + HMPREF1058_RS17090 0.43 -0.3 522,261 + HMPREF1058_RS17090 0.43 -0.1 522,261 + HMPREF1058_RS17090 0.43 +0.6 522,262 - HMPREF1058_RS17090 0.44 -1.4 522,262 - HMPREF1058_RS17090 0.44 -1.3 522,263 + HMPREF1058_RS17090 0.44 -1.0 522,305 + HMPREF1058_RS17090 0.49 -1.2 522,305 + HMPREF1058_RS17090 0.49 -0.4 522,306 - HMPREF1058_RS17090 0.49 -1.9 522,306 - HMPREF1058_RS17090 0.49 +0.1 522,319 - HMPREF1058_RS17090 0.51 -0.4 522,375 - HMPREF1058_RS17090 0.59 -0.8 522,416 + HMPREF1058_RS17090 0.64 -1.5 522,444 + HMPREF1058_RS17090 0.68 -0.9 522,444 + HMPREF1058_RS17090 0.68 -0.9 522,499 + HMPREF1058_RS17090 0.75 +0.7 522,499 + HMPREF1058_RS17090 0.75 -2.3 522,499 + HMPREF1058_RS17090 0.75 -0.4 522,500 - HMPREF1058_RS17090 0.75 -0.4 522,512 + HMPREF1058_RS17090 0.77 -1.8 522,516 + HMPREF1058_RS17090 0.77 +0.3 522,517 - HMPREF1058_RS17090 0.77 -0.3 522,623 - -2.5 522,668 - -0.4 522,669 + -2.5 522,681 + -0.7 522,721 - -2.6 523,460 - HMPREF1058_RS17080 0.19 +0.3 523,508 - HMPREF1058_RS17080 0.23 +1.4
Or see this region's nucleotide sequence