Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16740 and HMPREF1058_RS16735 are separated by 36 nucleotides HMPREF1058_RS16735 and HMPREF1058_RS16730 are separated by 208 nucleotides HMPREF1058_RS16730 and HMPREF1058_RS16725 are separated by 13 nucleotides
HMPREF1058_RS16740: HMPREF1058_RS16740 - TPM domain-containing protein, at 606,580 to 607,500
_RS16740
HMPREF1058_RS16735: HMPREF1058_RS16735 - LemA family protein, at 607,537 to 608,118
_RS16735
HMPREF1058_RS16730: HMPREF1058_RS16730 - chorismate synthase, at 608,327 to 609,403
_RS16730
HMPREF1058_RS16725: HMPREF1058_RS16725 - dipeptidase, at 609,417 to 610,769
_RS16725
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 607.355 kb on - strand, within HMPREF1058_RS16740 at 607.528 kb on + strand at 607.528 kb on + strand at 607.530 kb on + strand at 607.530 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.533 kb on - strand at 607.533 kb on - strand at 607.560 kb on - strand at 607.563 kb on - strand at 607.605 kb on + strand, within HMPREF1058_RS16735 at 607.718 kb on - strand, within HMPREF1058_RS16735 at 607.847 kb on + strand, within HMPREF1058_RS16735 at 607.847 kb on + strand, within HMPREF1058_RS16735 at 607.964 kb on + strand, within HMPREF1058_RS16735 at 607.964 kb on + strand, within HMPREF1058_RS16735 at 607.999 kb on + strand, within HMPREF1058_RS16735 at 608.001 kb on + strand, within HMPREF1058_RS16735 at 608.002 kb on - strand, within HMPREF1058_RS16735 at 608.123 kb on + strand at 608.146 kb on + strand at 608.269 kb on + strand at 608.269 kb on + strand at 608.271 kb on + strand at 608.272 kb on - strand at 608.272 kb on - strand at 608.274 kb on + strand at 608.317 kb on + strand at 608.326 kb on + strand at 608.488 kb on + strand, within HMPREF1058_RS16730 at 608.513 kb on - strand, within HMPREF1058_RS16730 at 608.650 kb on + strand, within HMPREF1058_RS16730 at 608.655 kb on - strand, within HMPREF1058_RS16730 at 608.728 kb on - strand, within HMPREF1058_RS16730 at 608.799 kb on + strand, within HMPREF1058_RS16730 at 608.850 kb on + strand, within HMPREF1058_RS16730 at 609.041 kb on - strand, within HMPREF1058_RS16730 at 609.171 kb on + strand, within HMPREF1058_RS16730 at 609.171 kb on + strand, within HMPREF1058_RS16730 at 609.203 kb on + strand, within HMPREF1058_RS16730 at 609.258 kb on + strand, within HMPREF1058_RS16730 at 609.391 kb on + strand at 609.399 kb on + strand at 609.402 kb on - strand at 609.402 kb on - strand at 609.515 kb on + strand at 609.616 kb on + strand, within HMPREF1058_RS16725 at 609.635 kb on - strand, within HMPREF1058_RS16725 at 609.664 kb on - strand, within HMPREF1058_RS16725 at 609.664 kb on - strand at 609.680 kb on - strand, within HMPREF1058_RS16725 at 609.811 kb on - strand, within HMPREF1058_RS16725 at 609.814 kb on + strand at 609.893 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.935 kb on - strand, within HMPREF1058_RS16725 at 610.082 kb on + strand, within HMPREF1058_RS16725 at 610.089 kb on - strand, within HMPREF1058_RS16725 at 610.100 kb on + strand, within HMPREF1058_RS16725 at 610.101 kb on - strand, within HMPREF1058_RS16725 at 610.162 kb on + strand, within HMPREF1058_RS16725 at 610.163 kb on - strand, within HMPREF1058_RS16725 at 610.243 kb on + strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.357 kb on + strand, within HMPREF1058_RS16725 at 610.357 kb on + strand, within HMPREF1058_RS16725 at 610.358 kb on - strand, within HMPREF1058_RS16725 at 610.375 kb on - strand, within HMPREF1058_RS16725
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 607,355 - HMPREF1058_RS16740 0.84 +0.3 607,528 + -0.1 607,528 + -0.8 607,530 + +0.0 607,530 + +1.9 607,532 + -0.3 607,532 + +0.2 607,532 + -0.4 607,532 + +1.1 607,532 + -1.0 607,533 - -2.4 607,533 - -1.2 607,560 - -2.6 607,563 - +0.7 607,605 + HMPREF1058_RS16735 0.12 +0.7 607,718 - HMPREF1058_RS16735 0.31 -0.9 607,847 + HMPREF1058_RS16735 0.53 -1.0 607,847 + HMPREF1058_RS16735 0.53 -3.1 607,964 + HMPREF1058_RS16735 0.73 -0.1 607,964 + HMPREF1058_RS16735 0.73 +1.0 607,999 + HMPREF1058_RS16735 0.79 +0.0 608,001 + HMPREF1058_RS16735 0.80 -2.0 608,002 - HMPREF1058_RS16735 0.80 -0.3 608,123 + +0.4 608,146 + -1.1 608,269 + +2.4 608,269 + +1.3 608,271 + +2.0 608,272 - -3.8 608,272 - -2.6 608,274 + +0.9 608,317 + -0.7 608,326 + -1.0 608,488 + HMPREF1058_RS16730 0.15 +0.7 608,513 - HMPREF1058_RS16730 0.17 -1.5 608,650 + HMPREF1058_RS16730 0.30 -2.2 608,655 - HMPREF1058_RS16730 0.30 -0.1 608,728 - HMPREF1058_RS16730 0.37 -1.0 608,799 + HMPREF1058_RS16730 0.44 +1.3 608,850 + HMPREF1058_RS16730 0.49 -0.7 609,041 - HMPREF1058_RS16730 0.66 +1.3 609,171 + HMPREF1058_RS16730 0.78 +0.3 609,171 + HMPREF1058_RS16730 0.78 -0.9 609,203 + HMPREF1058_RS16730 0.81 -1.0 609,258 + HMPREF1058_RS16730 0.86 -2.7 609,391 + +1.5 609,399 + +1.9 609,402 - -2.6 609,402 - +1.2 609,515 + -0.7 609,616 + HMPREF1058_RS16725 0.15 +0.7 609,635 - HMPREF1058_RS16725 0.16 -1.8 609,664 - HMPREF1058_RS16725 0.18 +0.9 609,664 - +0.6 609,680 - HMPREF1058_RS16725 0.19 -2.0 609,811 - HMPREF1058_RS16725 0.29 -0.7 609,814 + +1.3 609,893 + HMPREF1058_RS16725 0.35 -1.6 609,911 + HMPREF1058_RS16725 0.37 -2.3 609,911 + HMPREF1058_RS16725 0.37 -1.4 609,911 + HMPREF1058_RS16725 0.37 -1.1 609,935 - HMPREF1058_RS16725 0.38 -0.4 610,082 + HMPREF1058_RS16725 0.49 -0.4 610,089 - HMPREF1058_RS16725 0.50 -0.2 610,100 + HMPREF1058_RS16725 0.50 -0.7 610,101 - HMPREF1058_RS16725 0.51 -1.4 610,162 + HMPREF1058_RS16725 0.55 +1.0 610,163 - HMPREF1058_RS16725 0.55 -1.3 610,243 + HMPREF1058_RS16725 0.61 -0.8 610,287 - HMPREF1058_RS16725 0.64 -0.2 610,287 - HMPREF1058_RS16725 0.64 +1.6 610,287 - HMPREF1058_RS16725 0.64 +1.2 610,334 + HMPREF1058_RS16725 0.68 +1.0 610,334 + HMPREF1058_RS16725 0.68 +0.7 610,334 + HMPREF1058_RS16725 0.68 +0.2 610,357 + HMPREF1058_RS16725 0.69 +0.3 610,357 + HMPREF1058_RS16725 0.69 +0.2 610,358 - HMPREF1058_RS16725 0.70 -0.8 610,375 - HMPREF1058_RS16725 0.71 +0.2
Or see this region's nucleotide sequence