Experiment: pyrophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16240 and HMPREF1058_RS16235 overlap by 4 nucleotides HMPREF1058_RS16235 and HMPREF1058_RS16230 are separated by 255 nucleotides
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
HMPREF1058_RS16235: HMPREF1058_RS16235 - AMP-binding protein, at 726,128 to 727,213
_RS16235
HMPREF1058_RS16230: HMPREF1058_RS16230 - AraC family transcriptional regulator, at 727,469 to 728,353
_RS16230
Position (kb) 726
727
728 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand at 725.256 kb on + strand, within HMPREF1058_RS16240 at 725.782 kb on + strand at 725.838 kb on + strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 726.041 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.308 kb on - strand, within HMPREF1058_RS16235 at 726.342 kb on - strand, within HMPREF1058_RS16235 at 726.427 kb on + strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.466 kb on - strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.834 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 727.083 kb on + strand, within HMPREF1058_RS16235 at 727.107 kb on + strand at 727.229 kb on - strand at 727.350 kb on + strand at 727.400 kb on + strand at 727.468 kb on + strand at 727.468 kb on + strand at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.476 kb on - strand at 727.476 kb on - strand at 727.478 kb on - strand at 727.478 kb on - strand at 727.535 kb on + strand at 727.536 kb on - strand at 727.537 kb on + strand at 727.577 kb on + strand, within HMPREF1058_RS16230 at 727.602 kb on + strand, within HMPREF1058_RS16230 at 727.602 kb on + strand, within HMPREF1058_RS16230 at 727.603 kb on - strand, within HMPREF1058_RS16230 at 727.646 kb on + strand, within HMPREF1058_RS16230 at 727.652 kb on - strand, within HMPREF1058_RS16230 at 727.811 kb on + strand, within HMPREF1058_RS16230 at 727.812 kb on - strand, within HMPREF1058_RS16230 at 727.812 kb on - strand, within HMPREF1058_RS16230 at 727.884 kb on + strand, within HMPREF1058_RS16230 at 727.886 kb on + strand, within HMPREF1058_RS16230 at 727.887 kb on - strand, within HMPREF1058_RS16230 at 727.931 kb on - strand, within HMPREF1058_RS16230 at 727.980 kb on - strand, within HMPREF1058_RS16230 at 727.999 kb on + strand, within HMPREF1058_RS16230 at 728.000 kb on - strand, within HMPREF1058_RS16230 at 728.121 kb on - strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.176 kb on - strand, within HMPREF1058_RS16230 at 728.176 kb on - strand at 728.176 kb on - strand, within HMPREF1058_RS16230 at 728.198 kb on + strand, within HMPREF1058_RS16230
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source remove 725,143 + -1.5 725,143 + -3.3 725,145 + -3.0 725,145 + -2.3 725,145 + -3.2 725,147 + -2.7 725,161 + -2.3 725,256 + HMPREF1058_RS16240 0.17 -0.4 725,782 + +0.2 725,838 + HMPREF1058_RS16240 0.72 -2.6 725,839 - HMPREF1058_RS16240 0.72 -1.5 725,839 - HMPREF1058_RS16240 0.72 -2.4 726,041 + -3.4 726,043 + -1.2 726,044 - -2.0 726,044 - -3.9 726,044 - -3.2 726,308 - HMPREF1058_RS16235 0.17 -1.5 726,342 - HMPREF1058_RS16235 0.20 -2.4 726,427 + HMPREF1058_RS16235 0.28 -2.3 726,428 - HMPREF1058_RS16235 0.28 -1.5 726,428 - HMPREF1058_RS16235 0.28 -2.8 726,441 - HMPREF1058_RS16235 0.29 -3.8 726,441 - HMPREF1058_RS16235 0.29 -2.1 726,465 + HMPREF1058_RS16235 0.31 -2.2 726,465 + HMPREF1058_RS16235 0.31 -3.3 726,466 - HMPREF1058_RS16235 0.31 -2.1 726,833 + HMPREF1058_RS16235 0.65 -1.6 726,833 + HMPREF1058_RS16235 0.65 -1.3 726,834 - HMPREF1058_RS16235 0.65 -0.9 726,877 - HMPREF1058_RS16235 0.69 -2.5 726,877 - HMPREF1058_RS16235 0.69 +0.5 726,877 - HMPREF1058_RS16235 0.69 -2.7 726,961 - HMPREF1058_RS16235 0.77 -2.9 726,961 - HMPREF1058_RS16235 0.77 -2.4 727,083 + HMPREF1058_RS16235 0.88 -1.6 727,107 + -1.3 727,229 - -0.3 727,350 + +1.2 727,400 + -0.4 727,468 + +2.8 727,468 + -0.7 727,468 + +0.6 727,468 + -0.9 727,469 - -1.0 727,476 - -0.4 727,476 - +0.4 727,478 - -0.4 727,478 - -0.2 727,535 + -0.7 727,536 - -1.0 727,537 + -0.2 727,577 + HMPREF1058_RS16230 0.12 -0.2 727,602 + HMPREF1058_RS16230 0.15 +1.1 727,602 + HMPREF1058_RS16230 0.15 +0.5 727,603 - HMPREF1058_RS16230 0.15 -1.0 727,646 + HMPREF1058_RS16230 0.20 -2.2 727,652 - HMPREF1058_RS16230 0.21 +0.8 727,811 + HMPREF1058_RS16230 0.39 +0.3 727,812 - HMPREF1058_RS16230 0.39 -0.4 727,812 - HMPREF1058_RS16230 0.39 -1.5 727,884 + HMPREF1058_RS16230 0.47 -1.8 727,886 + HMPREF1058_RS16230 0.47 -0.7 727,887 - HMPREF1058_RS16230 0.47 -1.3 727,931 - HMPREF1058_RS16230 0.52 -2.2 727,980 - HMPREF1058_RS16230 0.58 -1.0 727,999 + HMPREF1058_RS16230 0.60 -1.5 728,000 - HMPREF1058_RS16230 0.60 -0.9 728,121 - HMPREF1058_RS16230 0.74 +0.2 728,175 + HMPREF1058_RS16230 0.80 +0.6 728,175 + HMPREF1058_RS16230 0.80 +1.0 728,175 + HMPREF1058_RS16230 0.80 -0.0 728,175 + HMPREF1058_RS16230 0.80 -1.5 728,176 - HMPREF1058_RS16230 0.80 +1.5 728,176 - -0.8 728,176 - HMPREF1058_RS16230 0.80 +1.5 728,198 + HMPREF1058_RS16230 0.82 -1.6
Or see this region's nucleotide sequence