Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12810

Experiment: pyrophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12815 and HMPREF1058_RS12810 are separated by 95 nucleotidesHMPREF1058_RS12810 and HMPREF1058_RS12805 are separated by 80 nucleotidesHMPREF1058_RS12805 and HMPREF1058_RS12800 are separated by 168 nucleotides HMPREF1058_RS12815: HMPREF1058_RS12815 - sodium-dependent transporter, at 25,180 to 26,544 _RS12815 HMPREF1058_RS12810: HMPREF1058_RS12810 - VanZ family protein, at 26,640 to 27,026 _RS12810 HMPREF1058_RS12805: HMPREF1058_RS12805 - RNA polymerase sigma factor, at 27,107 to 27,610 _RS12805 HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253 _RS12800 Position (kb) 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 25.832 kb on + strand, within HMPREF1058_RS12815at 25.994 kb on - strand, within HMPREF1058_RS12815at 25.999 kb on + strand, within HMPREF1058_RS12815at 26.197 kb on + strand, within HMPREF1058_RS12815at 26.198 kb on - strand, within HMPREF1058_RS12815at 26.198 kb on - strand, within HMPREF1058_RS12815at 26.199 kb on + strand, within HMPREF1058_RS12815at 26.200 kb on - strand, within HMPREF1058_RS12815at 26.200 kb on - strand, within HMPREF1058_RS12815at 26.239 kb on + strand, within HMPREF1058_RS12815at 26.240 kb on - strand, within HMPREF1058_RS12815at 26.271 kb on - strand, within HMPREF1058_RS12815at 26.325 kb on + strand, within HMPREF1058_RS12815at 26.367 kb on + strand, within HMPREF1058_RS12815at 26.407 kb on + strand, within HMPREF1058_RS12815at 26.413 kb on - strandat 26.413 kb on - strandat 26.413 kb on - strandat 26.458 kb on + strandat 26.458 kb on + strandat 26.458 kb on + strandat 26.460 kb on + strandat 26.461 kb on - strandat 26.640 kb on - strandat 26.645 kb on - strandat 26.646 kb on + strandat 26.655 kb on - strandat 26.688 kb on - strand, within HMPREF1058_RS12810at 26.745 kb on + strand, within HMPREF1058_RS12810at 26.766 kb on - strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.767 kb on + strand, within HMPREF1058_RS12810at 26.768 kb on - strand, within HMPREF1058_RS12810at 26.768 kb on - strand, within HMPREF1058_RS12810at 26.775 kb on + strand, within HMPREF1058_RS12810at 26.804 kb on - strand, within HMPREF1058_RS12810at 26.845 kb on + strand, within HMPREF1058_RS12810at 26.846 kb on - strand, within HMPREF1058_RS12810at 26.863 kb on + strand, within HMPREF1058_RS12810at 26.864 kb on - strand, within HMPREF1058_RS12810at 26.876 kb on + strand, within HMPREF1058_RS12810at 26.877 kb on - strand, within HMPREF1058_RS12810at 26.907 kb on + strand, within HMPREF1058_RS12810at 26.981 kb on - strand, within HMPREF1058_RS12810at 26.989 kb on - strandat 26.991 kb on + strandat 26.992 kb on - strandat 26.995 kb on + strandat 26.995 kb on + strandat 27.009 kb on - strandat 27.010 kb on + strandat 27.011 kb on - strandat 27.011 kb on - strandat 27.018 kb on - strandat 27.082 kb on + strandat 27.084 kb on + strandat 27.089 kb on + strandat 27.108 kb on + strandat 27.109 kb on - strandat 27.208 kb on + strand, within HMPREF1058_RS12805at 27.224 kb on + strand, within HMPREF1058_RS12805at 27.224 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.228 kb on + strand, within HMPREF1058_RS12805at 27.229 kb on - strand, within HMPREF1058_RS12805at 27.229 kb on - strand, within HMPREF1058_RS12805at 27.229 kb on - strand, within HMPREF1058_RS12805at 27.232 kb on + strand, within HMPREF1058_RS12805at 27.232 kb on + strand, within HMPREF1058_RS12805at 27.233 kb on - strand, within HMPREF1058_RS12805at 27.282 kb on - strand, within HMPREF1058_RS12805at 27.409 kb on + strand, within HMPREF1058_RS12805at 27.410 kb on - strand, within HMPREF1058_RS12805at 27.490 kb on + strand, within HMPREF1058_RS12805at 27.574 kb on + strandat 27.578 kb on + strandat 27.579 kb on - strandat 27.582 kb on - strandat 27.592 kb on + strandat 27.613 kb on + strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.714 kb on + strandat 27.715 kb on - strandat 27.727 kb on - strandat 27.901 kb on + strandat 27.987 kb on + strandat 28.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 1 mM phosphorus source
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25,832 + HMPREF1058_RS12815 0.48 -1.4
25,994 - HMPREF1058_RS12815 0.60 -0.4
25,999 + HMPREF1058_RS12815 0.60 -0.9
26,197 + HMPREF1058_RS12815 0.75 -2.4
26,198 - HMPREF1058_RS12815 0.75 -0.1
26,198 - HMPREF1058_RS12815 0.75 +1.8
26,199 + HMPREF1058_RS12815 0.75 -0.6
26,200 - HMPREF1058_RS12815 0.75 -0.7
26,200 - HMPREF1058_RS12815 0.75 -0.8
26,239 + HMPREF1058_RS12815 0.78 -0.3
26,240 - HMPREF1058_RS12815 0.78 +0.1
26,271 - HMPREF1058_RS12815 0.80 +0.2
26,325 + HMPREF1058_RS12815 0.84 -3.6
26,367 + HMPREF1058_RS12815 0.87 -3.6
26,407 + HMPREF1058_RS12815 0.90 -1.2
26,413 - -0.6
26,413 - +0.2
26,413 - -0.5
26,458 + -2.6
26,458 + -2.3
26,458 + -2.3
26,460 + -2.6
26,461 - +1.0
26,640 - -2.0
26,645 - -3.3
26,646 + -2.0
26,655 - -1.0
26,688 - HMPREF1058_RS12810 0.12 -2.4
26,745 + HMPREF1058_RS12810 0.27 -0.9
26,766 - HMPREF1058_RS12810 0.33 -3.0
26,767 + HMPREF1058_RS12810 0.33 -2.1
26,767 + HMPREF1058_RS12810 0.33 -2.2
26,767 + HMPREF1058_RS12810 0.33 -2.0
26,767 + HMPREF1058_RS12810 0.33 -4.4
26,767 + HMPREF1058_RS12810 0.33 -3.2
26,767 + HMPREF1058_RS12810 0.33 -3.0
26,767 + HMPREF1058_RS12810 0.33 -3.8
26,767 + HMPREF1058_RS12810 0.33 -2.4
26,768 - HMPREF1058_RS12810 0.33 -3.2
26,768 - HMPREF1058_RS12810 0.33 -2.1
26,775 + HMPREF1058_RS12810 0.35 -3.7
26,804 - HMPREF1058_RS12810 0.42 -1.7
26,845 + HMPREF1058_RS12810 0.53 -1.4
26,846 - HMPREF1058_RS12810 0.53 -0.6
26,863 + HMPREF1058_RS12810 0.58 -0.8
26,864 - HMPREF1058_RS12810 0.58 -1.0
26,876 + HMPREF1058_RS12810 0.61 -3.5
26,877 - HMPREF1058_RS12810 0.61 -1.9
26,907 + HMPREF1058_RS12810 0.69 -0.9
26,981 - HMPREF1058_RS12810 0.88 -1.7
26,989 - -0.8
26,991 + -1.3
26,992 - -1.8
26,995 + +0.0
26,995 + -2.7
27,009 - -1.5
27,010 + -3.7
27,011 - -1.9
27,011 - -1.3
27,018 - -1.7
27,082 + -1.2
27,084 + -4.0
27,089 + -2.3
27,108 + -0.2
27,109 - -0.3
27,208 + HMPREF1058_RS12805 0.20 +0.0
27,224 + HMPREF1058_RS12805 0.23 -4.2
27,224 + HMPREF1058_RS12805 0.23 -3.2
27,228 + HMPREF1058_RS12805 0.24 -2.9
27,228 + HMPREF1058_RS12805 0.24 -3.8
27,228 + HMPREF1058_RS12805 0.24 -2.0
27,228 + HMPREF1058_RS12805 0.24 -2.9
27,228 + HMPREF1058_RS12805 0.24 -1.2
27,228 + HMPREF1058_RS12805 0.24 -3.7
27,228 + HMPREF1058_RS12805 0.24 -2.9
27,229 - HMPREF1058_RS12805 0.24 -1.9
27,229 - HMPREF1058_RS12805 0.24 -2.5
27,229 - HMPREF1058_RS12805 0.24 -4.2
27,232 + HMPREF1058_RS12805 0.25 -1.4
27,232 + HMPREF1058_RS12805 0.25 -2.0
27,233 - HMPREF1058_RS12805 0.25 -3.8
27,282 - HMPREF1058_RS12805 0.35 -1.5
27,409 + HMPREF1058_RS12805 0.60 -3.5
27,410 - HMPREF1058_RS12805 0.60 -3.3
27,490 + HMPREF1058_RS12805 0.76 -2.2
27,574 + -2.6
27,578 + +0.4
27,579 - -3.2
27,582 - -1.3
27,592 + -2.6
27,613 + -2.6
27,614 - -3.4
27,614 - -2.6
27,714 + -1.6
27,715 - -4.1
27,727 - -3.0
27,901 + -2.4
27,987 + -1.9
28,022 - -1.6

Or see this region's nucleotide sequence